Array 1 128866-127923 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTMQ01000004.1 Escherichia coli strain YH17172 scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 128865 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 128804 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 128743 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 128682 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 128621 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 128560 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 128499 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 128438 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 128377 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 128316 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 128255 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 128195 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 128134 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 128073 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 128012 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 127951 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 155753-154565 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTMQ01000004.1 Escherichia coli strain YH17172 scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 155752 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 155691 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 155630 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 155569 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 155508 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 155447 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 155386 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 155325 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 155264 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 155203 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 155142 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 155081 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 155020 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 154959 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 154898 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 154837 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 154776 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 154715 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 154654 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 154593 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //