Array 1 168820-169508 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR881453.1 Halomonas sp. 113 isolate Halomonas sp. 113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 168820 28 100.0 32 ............................ GCCAACGCCGCGCAGTCGGAGGTAAAGGGCCA 168880 28 100.0 32 ............................ GCCCAGAACAACCGTGCCGAACTCGACGTCTT 168940 28 100.0 32 ............................ TGAATGAACTCACAATGCCTGGAACCTATTTT 169000 28 100.0 32 ............................ AATAACGAGTTCACCTGGAAAGAAGTCAACGG 169060 28 100.0 32 ............................ GTAAATCGCTGGGCATGTTCTGCAGCGTGTAC 169120 28 100.0 32 ............................ AAGTGCCGTAACGGGCACGGTAAGCACAGGCG 169180 28 100.0 32 ............................ TTATCCGCTGGCTCTTGGGGGAGAAGAAGCGC 169240 28 100.0 32 ............................ AGCACGAGATCGCGCACTGTTTGGGTATCCGG 169300 28 100.0 32 ............................ GTGCCAAACGTCGTCAGCCGATAGGCAAACCC 169360 28 89.3 32 ..T........TG............... TGGCGGCCTGACTGCATTTGCACGCTGCCCGC 169420 28 89.3 33 ..T........TG............... ATTCTGATGGATGCTTGGCACCCTTGCTTAGGT 169481 28 89.3 0 ...T........T........C...... | ========== ====== ====== ====== ============================ ================================= ================== 12 28 97.3 32 GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : CACGGCTGGGGCAATTGATGGGCGCTGACTGGCTAACCGGCATGCGTGATCACACCCAAGTCAGCGAGGTGCTTGCCGTGCCCGCCAATTCTCAGCACTTCAACGTGGCGCGCAAGCAGTTCAATACGGGCAGCCCAAGCCGTGCCAAACGCTATGCCAAGCGGCATGACATTTCGGAAGATGAAGCGCAGCAGATTTATGCCAAGCTAGCGGCGCGGCGCATTGAGCTACCCTTCGTGCAAATAAACAGCCGCTCCACCCAGCAGCGCTTTAGCCTGTTTATTGAACACGGCAAGCCTCAGGAAAAACCGGTGGCGGGTTCGTTTAATCACTATGGCTTAAGCCCTGACGCCACAGTGCCGTGGTTTTGACCCTTTTTTCTAACATGAAAATAGGCGACCAATAATCAATCACTTAGCGGTGTCGCTCGAAAAAGGGTGATACCGCTTTTTTTGGCTAAAGCTCTTTAACAATCAGCACATTAATTTTGATATGCTCTA # Right flank : AGCTCCAAAAAACTCAAGGTAATGCGGGATATTGAGTTTATTGCTGGCTCAGTATCGTACTTCATCCCTGAATAGCTGAACCTTTTATTAATTAAAATTGATAGCATAGGAGCATTCTTTAAAAGGAATTTCCACTTATGCACTCGTTGAATAAAGCCATTGTTCTCGCCGCCGCGATTACTCTGGCGCCTCCTATACTGGGTCAGCCAGTGAAGGCAGGAACCGAGGCCTATAACAATGGTGATTACGCCACCGCTCTGAAGTATTTGGAGCCGTTGGCTGAACAAGGCGATGCCGACGCGCAGTACACTCTTGGCGTCATGTACGACCTCGGCGAGGGAGTCACCCAGAACGCCTCAACAGCCGCCGAGTGGTACCGAAAAGCCGCCGAACAGGGCGATGCCGACGCGCAGCTAAGTCTTGGCCTCATGTATGAATACGGCGAAGGAGTTCCCCAGAGCACCTCAACGGCCGCTGAGTGGTATCGCTGGGCCGCTGAG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2305531-2305978 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR881453.1 Halomonas sp. 113 isolate Halomonas sp. 113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2305531 28 96.4 32 ........T................... CGGTGCAGATTCAAGCCGAAAGCCGAGCAGGC 2305591 28 96.4 32 ........T................... CGCTCGATGGCGGGCTAGGGAGTTAAACGTAT 2305651 28 96.4 32 ........T................... AAATGCTACCCGTGCGCAGCATGACCACCTGG 2305711 28 100.0 32 ............................ CGCGGCGAATTGTGGGACACGTTTATCGATGC 2305771 28 100.0 32 ............................ ATGGTACGCAGTGAGTCTTTTACCCATAGCGG 2305831 28 100.0 32 ............................ CGCGAGAGGAGGTGAATAAATCGATCCGGTTG 2305891 28 100.0 32 ............................ TTGGAGACGATTGTTAAACAGCAGCCAGTTTC 2305951 28 92.9 0 ........................T.T. | ========== ====== ====== ====== ============================ ================================ ================== 8 28 97.8 32 GTGAACCGCCGCATAGGCAGCTGAAAAT # Left flank : ATATAGCTGACGAAGGATTTATTGAAGTTAGTGGTGTTAAAATGGTTCCATCCACATTAGAGGAAGTGAGGTTTATTAGAAACCAGCATATTGCTAAGTCTTTTCCGGGCGAAATTAAGAGAAGATTGGCCCGTGGCAAAAAGCGGGCTGAAAAACGTGGTGAGACGTTCATGCCTATTAGCGTTGTATCAGATCGTTTGGTTGATCACTGCCACGTAATTCCTATTGATAGCCGCTCGTCAGGCCAACGCTTTCCGCTGTATGTCCAGCTTGAGGCACTCAGCGAAGAAAGCAAGCATGATAGCTACAATAGCTACGGCTTGGCTACACAACACTCGCATACTGGCTCTGTTCCAAATCTTAAACATATTACCTAAATATTTATAGAATATATATTGTATTACTTATCAATGTCTTATCTCTTATACGCCAAGAAGGGTATTTTTACCATTTTGTGTTTATCTCGTTGATATCTATATTTTAAGTACTAACTACGTCTA # Right flank : TAGGACTGGAAGCCAGCAACGGTAATGATACACACCGCCGCAATGGCAGTAATTGTTCTAAAACCTCCAATTTTACTTGGAGGTTTTTTTATAGTGAGCCTGGGATAGCGCGCAGCGCCCAATGAGGGGGTCATGAGGGTGTCCTCTGTGGGATTGAGGGCGGATGGTAGGGCTGTCGTAAGAACTTTTCCTACAACCATCGCTCGCCATGACATCTCCAGCAATGACACCTTCCGCCACCTAGGATTGATGCCTACTATGACCTTTTTGCAACTTCATGTCTCGCTTTTCCGAGTAAATGAAAAATGTTTTTACCGCCCCCTGTGGCGCCCTTCAGTACTTAATTCAACGCAAGAAATGAGGCATGGATCTTAAATAAATACACAGGAGGTGCGCTCAGTTTCTGCGGCAAAAAAGCAGATAATCTTAATGTATATTTATGACGTGATTTTATTACAGAAGCAAACGTTCGTTTTATTTTATGTCATCTAAAAATGGAA # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACCGCCGCATAGGCAGCTGAAAAT # Alternate repeat : GTGAACCGTCGCATAGGCAGCTGAAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.80,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //