Array 1 3229436-3228729 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_UGLQ01000003.1 Klebsiella pneumoniae strain NCTC9661, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                          	Insertion/Deletion
==========	======	======	======	============================	=========================================	==================
   3229435	    28	 100.0	    33	............................	CGCTCCGGCCGTCTATCGCAGAGGACAAAACTT        	
   3229374	    28	 100.0	    33	............................	CCGGTGCGGTAGCCTTTGCCGCCTGCTGGCGCA        	
   3229313	    28	 100.0	    33	............................	TATTCGAGGTTGTCACATACGGGGCTGCTGAAC        	
   3229252	    28	 100.0	    33	............................	CGTTCTCGCTGCGTCTGAAAGGTAAACCCACCA        	
   3229191	    28	 100.0	    33	............................	TCTGGCGCTGCCGTTCCTCTTCGGGTGAGAGGG        	
   3229130	    28	 100.0	    33	............................	TGTCGTCACATAGTGCTCTATCCACTGGTTAGC        	
   3229069	    28	 100.0	    33	............................	TAGTTCGCGAGGAGACGCCCCAAGGTTCACCGC        	
   3229008	    28	 100.0	    33	............................	CGGGCTGCAGGCGCGCGCGTCCTCCGACCTGGC        	
   3228947	    28	 100.0	    33	............................	CCTCATCTAGTAAAAGCGGTTTTGTTATGAATG        	
   3228886	    28	 100.0	    33	............................	TCCGCCGTTTAATCGCGGTGATGATATCCGGCA        	
   3228825	    28	 100.0	    41	............................	TGGAATCCACGACGCGCCGTACCAGCGCGGGCATTCGTTCT	
   3228756	    28	  89.3	     0	......A...T.T...............	|                                        	
==========	======	======	======	============================	=========================================	==================
        12	    28	  99.1	    34	GTCTTCCCCACGCACGTGGGGGTGTTTC	                                         	       

# Left flank :   TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT
# Right flank :  TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTAACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCCTATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCTG

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTTCCCCACGCACGTGGGGGTGTTTC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [8,2] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-10.80,-11.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [3-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,5.55   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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