Array 1 35763-38968 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUQ010000017.1 Gallibacterium anatis strain TS0001 contig17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================================================== ================== 35763 35 100.0 41 ................................... TAATGAATTCATTTTTCTCTTTTTCAGAGAAAACGATTTCG 35839 35 100.0 33 ................................... TGCTTTTACCCACACGAATCCCTACAACTTTAG 35907 35 100.0 36 ................................... TGATCCCTATTTCCTAATTGTTAAAGAGCAACGCAG 35978 35 100.0 35 ................................... TGATTGCTAACTGATAACCGTTAGCAAGTGGTCAT 36048 35 100.0 36 ................................... TTAGCAAGCGTTCATTTTCCCAATTTTTAAAGAACA 36119 35 100.0 32 ................................... TTCGTCTTGACAATCTGAATCATATTCTAGAC 36186 35 100.0 33 ................................... TCGTTCATTTCCCAATTTTTAAAGAACAGAAGA 36254 35 100.0 37 ................................... TTTTTAACCATCCATCGGGTACTGTTGCCAACTAATA 36326 35 100.0 39 ................................... TTTGCTAACTGATAACCGTTAGCAAGCGATCATTTCCGT 36400 35 100.0 40 ................................... TTTATCGAGGACGTGTTACACGGCGATGATTTTAATCAGT 36475 35 100.0 38 ................................... TCAATCCCTATTTCCTAATTTTTAAAGAGCAAATACAG 36548 35 100.0 36 ................................... TGCAACCGACGCGTTGCCTTCTTCCGTTGGCGCGGT 36619 35 100.0 37 ................................... TCAAGCGGTCGGTTCCTAGTTTTTAAAGAACAATGCA 36691 35 100.0 37 ................................... TATTGAATACAGGGAGTGAATCAAATCGTACACTTTG 36763 35 100.0 36 ................................... TGTCTTCAGGGTGACTCTCTTCGTACTCATCTTCTG 36834 35 100.0 38 ................................... TTAATTTTGCTTCTGAATAGTAGTGTTTAGTAGTCATA 36907 35 100.0 36 ................................... TGTTGAGATTCAACGATATTCTTAACATACATAAAT 36978 35 100.0 37 ................................... TAGCAATCTCTATTTCCAAATTGTTAAAGAGCGCAAG 37050 35 100.0 37 ................................... TAAAACAAGTCAAGCTTAATTCTTGAGTGTCTTCGAT 37122 35 100.0 34 ................................... TAGATATGATTTTTCCTATCAGTTGTTCGGTTGT 37191 35 100.0 37 ................................... TATCCCTTTCCGAATTTTTAAAGAACAATGCAGGGTT 37263 35 100.0 39 ................................... TGATTTCATCGCTTACTACGATAGTCCCCTTAGCACAAT 37337 35 100.0 37 ................................... CCCCTTGAAAAAAGCCTTTTATTAATCGGCATTGATA 37409 35 97.1 36 .....A............................. CTCGAACAAGTCGTGGACTCCCGCCTCACGTTGTGA 37480 35 97.1 36 .....A............................. CAATAGGGTATCATCTAAATCCCTCACGGCTTTGAG 37551 35 97.1 35 .....A............................. CACGTTGTAAGAGGTACTACCTTGATACTCGTAGC 37621 35 97.1 33 .....A............................. CCTGTTACCCTCTTTAATTTCTTCGTTGGCATC 37689 35 97.1 38 .....A............................. CACACAGTCTTTAGACTATGCTTACCGATAAGCAATTT 37762 35 97.1 33 .....A............................. CCGGAATATCGTGCTGTTTTGCGCGATAAACTG 37830 35 97.1 36 .....A............................. CCTAAATTGGTACTCGTACCCCTCAGCGTCTTCTGC 37901 35 97.1 36 .....A............................. CCTTTAAGTGCTTTAGCGGCTAAGGTAGCGATATCT 37972 35 97.1 37 .....A............................. CTAATCGCCCACTTGAGATTTAATGTAGGCGTCCTTT 38044 35 97.1 38 .....A............................. CCCCTAATGCACGTTGCTTTAGGGTAGCTGTGTGTTGA 38117 35 97.1 36 .....A............................. CTCGACAATCCTCGTCATATTCTAGACTAGCAAGAT 38188 35 97.1 34 .....A............................. CTATGTGTTACTGGATATAGTCCATATCGGCTTT 38257 35 97.1 35 .....A............................. CGCGAAAGCCATCTAGGGTTGAACACGGACTCACG 38327 35 97.1 34 .....A............................. CTTAATTGATTGTTGATAATAAGTATTTAGTGTA 38396 35 97.1 36 .....A............................. CCCTAAGTCTTCTATTATGTTTTCTAAAGATTTACT 38467 35 97.1 35 .....A............................. CTACGTGGTTTTAGGCGCTCAGCTGCCGATTCCTC 38537 35 97.1 35 .....A............................. CTTCCTGCAGGGTACAGGCTTTCAAAAGCGTATTA 38607 35 97.1 36 .....A............................. CTACTCGAAACCGTCAGCATCCTCAGCTGTACCGTA 38678 35 97.1 37 .....A............................. CTCAGCTGCCATTTCCTCGTCTTCAACAGCAGGGTCA 38750 35 97.1 36 .....A............................. CTTATGTAATTACATAAAGCAATGATAAAGCTGTCG 38821 35 97.1 78 .....A............................. CTTGCTCCATTTACAATATTCTGCCCCAATTCAAATAAGTTCTAACTGCCGTTTTATAAATTTTGTGGAACGCTTCTG 38934 35 85.7 0 .....A.........................ACTT | ========== ====== ====== ====== =================================== ============================================================================== ================== 45 35 98.3 37 GTTCTGACCTAGCCCTGTTCTAAAAGGGATTGAGA # Left flank : AGAGGTTGCAAGATTGATTAAACAAGTGGATGACAGTGATGATTACCATATTGCATTGGAAAGTTTCTTTTTAAATCAACTTAGTATGTTGGCACCGGAGGAATAAAATGAAACAGTTCGTCATCGGTTATGACATTACAGATCCTAAACGGCTACAAAAGGTTTATAAACAAATGCAACATTTTGCTATTCCGCTACAATATAGTATTTTCTTATTTGAAGGAACAAAGGAGCAGTTACAGAAAGCCATTGCGCCGGTGATTGAAACAATTAATAGCAAAAAGGACGACTTAAGAATTTATGAATTACCGAGTTATGGATTAAAAGAGCGAATCGGAAAAACCGTTTTGCCAGAGGGCATTGTATTAACGGCACTGCCTACCAGGCTATAATTTTGTTTAAATAATAACCATATTGGAGGTTAACTATGCAGTCATTTATACTTTTTGGCAAAGCCACTTTTAATTTATTGATTACTAATGTATTTTACGATGCTGGGA # Right flank : TTTATAAAAGACATTAATGATAATTTTTTAAGGAAATATCAAATTTGAAATTTTTCTATCTATAGTAACGGTGATATATACTTAACTTTGTTATTACGAAGTAATAATGAAATTAAGCATTTAGTGTATAAATTTAGGAGAATTTTTATGAAAACAATTGCAATTATTTTAACGACTTTATTTGCGGTTACCGTTACTGCGCCTGTGTATGCCGGTTCTTGTGATTATTCTTGGCAAACTGCAAAAGACGGTTCCCGTTGCGGAGATCGTGCTGCAGACAGAAGACCGGGAGGCAGATAAAAGATAAAATGCATCTTTTATTATTTACTATAGTTATTATTTTTGCTTCGCCGGCATTTTGTTGGACGGGATATAATTATGATACCGGCTCTTATTTTGAAGTTGAACATTATGATCATCAAGGATTGGGTGAAGGCCCGGTGGAATATTATGATTATAACAGCGGAGAATATAAATCAGGTTATTTAGATCTATTTCCC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.06, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTGACCTAGCCCTGTTCTAAAAGGGATTGAGA # Alternate repeat : GTTCTAACCTAGCCCTGTTCTAAAAGGGATTGAGA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //