Array 1 392044-392611 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWTB010000002.1 Halomonas titanicae strain TAT1 NODE_2_length_672307_cov_221.011527, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 392044 28 100.0 32 ............................ CGGTGCAGATTCAAGCCGAAAGCCGAGCAGGC 392104 28 100.0 32 ............................ CGCTCGATGGCGGGCTAGGGAGTTAAACGTAT 392164 28 100.0 32 ............................ AACGGGCGATTAGGATGTGCTGTGGGCTTAAT 392224 28 100.0 32 ............................ AGGTTCGGCCAACGATACGGGGCCATCGGTTA 392284 28 100.0 32 ............................ AAATGCTACCCGTGCGCAGCATGACCACCTGG 392344 28 96.4 32 ........C................... CGCGGCGAATTGTGGGACACGTTTATCGATGC 392404 28 96.4 32 ........C................... ATGGTACGCAGTGAGTCTTTTACCCATAGCGG 392464 28 96.4 32 ........C................... CGCGAGAGGAGGTGAATAAATCGATCCGGTTG 392524 28 96.4 32 ........C................... TTGGAGACGATTGTTAAACAGCAGCCAGTTTC 392584 28 89.3 0 ........C...............T.T. | ========== ====== ====== ====== ============================ ================================ ================== 10 28 97.5 32 GTGAACCGTCGCATAGGCAGCTGAAAAT # Left flank : ATATAGCTGACGAAGGATTTATTGAAGTTAGTGGTGTTAAAATGGTTCCATCCACATTAGAGGAAGTGAGGTTTATTAGAAACCAGCATATTGCTAAGTCTTTTCCGGGCGAAATTAAGAGAAGATTGGCCCGTGGCAAAAAGCGGGCTGAAAAACGTGGTGAGACGTTCATGCCTATTAGCGTTGTATCAGATCGTTTGGTTGATCACTGCCACGTAATTCCTATTGATAGCCGCTCGTCAGGCCAACGCTTTCCGCTGTATGTCCAGCTTGAGGCACTCAGCGAAGAAAGCAAGCATGATAGCTACAATAGCTACGGCTTGGCTACACAACACTCGCATACTGGCTCTGTTCCAAATCTTAAACATATTACCTAAATATTTATAGAATATATATTGTATTACTTATCAATGTCTTATCTCTTATACGCCAAGAAGGGTATTTTTACCATTTTGTGTTTATCTCGTTGATATCTATATTTTAAGTACTAACTACGTCTA # Right flank : TAGGACTGGAAGCCAGCAACGGTAATGATACACACCGCCGCAATGGCAGTAATTGTTCTAAAACCTCCAATTTTACTTGGAGGTTTTTTTATAGTGAGCCTGGGATAGCGCGCAGCGCCCAATGAGGGGGTCATGAGGGTGTCCTCTGTGGGATTGAGGGCGGATGGTAGGGCTGTCGTAAGAACTTTTCCTACAACCATCGCTCGCCATGACATCTCCAGCAATGACACCTTCCGCCACCTAGGATTGATGCCTACTATGACCTTTTTGCAACTTCATGTCTCGCTTTTCCGAGTAAATGAAAAATGTTTTTACCGCCCCCTGTGGCGCTCTTCAGTACTTAATTCAACGCAAGAAATGAGGCATGGATCTTAAATAAATACACAGGAGGTGCGCTCAGTTTCTGCGGCAAAAAAGCAGATAATCTTAATGTATATTTATGACGTGATTTTATTACAGAAGCAAACGTTCGTTTTATTTTATGTCATCTAAAAATGGAA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACCGTCGCATAGGCAGCTGAAAAT # Alternate repeat : GTGAACCGCCGCATAGGCAGCTGAAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 213267-212157 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWTB010000007.1 Halomonas titanicae strain TAT1 NODE_7_length_299690_cov_252.351503, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 213266 28 100.0 32 ............................ CAGAACCACGCCACCCAAACCGAGCGCATCCG 213206 28 100.0 32 ............................ AGCTACCGCAAAGCCAACGCCGCCCTGCGCAC 213146 28 100.0 32 ............................ TTAGTGGGTAGAGTTGCCATATGGCCTCCTGA 213086 28 100.0 32 ............................ TAAAGAGGACGCAGAGTTTACCCGCATTCAGT 213026 28 100.0 33 ............................ CTAAATCAAAGCCCTTTTTATAGATCGACTGGA 212965 28 100.0 32 ............................ AAGAACAACTTGGGCGAGTACCTGCAATTGGT 212905 28 100.0 32 ............................ TATACTATCGGCACAGATCAAGCCAGTTAGAT 212845 28 100.0 32 ............................ AGTCTGCCTCGGTTATAGGATATTCCCATGAC 212785 28 100.0 32 ............................ TTCATTGCGCGGGTGAAGCGCGATACGTCCGT 212725 28 100.0 32 ............................ ACTAGCACGGTGTCGCCCTTGCGAACTACGTC 212665 28 89.3 32 ..T........TG............... CAAAAACAAACCCTCGCTATAGCGCTTCCCAT 212605 28 89.3 32 ..T........TG............... AGTTTGCAGTATGCACGCCGGAGGAAGAGGAG 212545 28 92.9 32 ..TA........................ AGCCAATGCGGCGGGCGTCAGCATTGCCCAGG 212485 28 89.3 32 ..T........TG............... GTCGATCTCGCCGCTGGCGTCGTCACATGCAC 212425 28 92.9 32 .C..........T............... TACGCAACGGCCGCCGCGCGGTATGATGAAAA 212365 28 89.3 33 ..TA.........T.............. AGGAGGCGGGATGTCTGAAGAAAATCCCGATAG 212304 28 85.7 32 T.TA..............G......... GCCACACACCCTAAAGCCCTGCCGGTCACCCG 212244 28 89.3 32 ..TA.....T.................. TCTAGCGCAGCAACTCGTGCGGTCAACTTTGC 212184 28 78.6 0 ....................TATG.CT. | ========== ====== ====== ====== ============================ ================================= ================== 19 28 94.6 32 GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : CACGGCTGGGGCAATTGATGGGCGCTGACTGGCTAACCGGCATGCGTGATCACACCCAAGTCAGCGAGGTGCTTGCCGTGCCCGCCAATTCTCAGCACTTCAACGTGGCGCGCAAGCAGTTCAATACGGGCAGCCCAAGCCGTGCCAAACGCTATGCCAAGCGGCATGACATTTCGGAAGATGAAGCGCAGCAGATTTATGCCAAGCTAGCGGCGCGGCGCATTGAGCTACCCTTCGTGCAAATAAACAGCCGCTCCACCCAGCAGCGCTTTAGCCTGTTTATTGAACACGGCAAGCCTCAGGAAAAACCGGTGGCGGGTTCGTTTAATCACTATGGCTTAAGCCCTGACGCCACAGTGCCGTGGTTTTGACCCTTTTTTCTAACATGAAAATAGGCGACCAATAATCAATCACTTAGCGGTGTCGCTCGAAAAAGGGTGATACCGCTTTTTTTGGCTAAAGCTCTTTAACAATCAGCACATTAATTTTGATATGCTCTA # Right flank : TAGATTTATTTAGTGTGCCCTTGGCACCGCTGCGCTTGAGGCTTATCACGCCTACTCGAAATGTGCATGAACCGTCATAAGTGGCGAGCATTGAGTCCTTCTGCCGGTTTCTGGTTATCTAATTGCAATTAATGGCAAAGATTACTTAGTTTTTGTGCAGCGTTGAGATATACTTATTTAGCTAGACGTCAAATTAAGCTATATCACTAACGTTAAAAGACATGGATCTTTCCCGCATGGACACTCATCACTTAGCGTCTGAACCGAAAAGCGTGGCCGCTCGTCAAGAGCCCGATAGTCTCTCGCTTTTCTTTCTGGTTTTTAAGACCGGCTTACTCACTATCCTTACTTTGGGGATTTACCGTTTCTGGCAAACGACTCGCATCCGTCAGTATCTTTGGGGCTCTACAAGCGCCAATGATTCTGCCTTGGAGTACACGGGAACAGGGCTTGAGAAGTTTATTGGCTTTCTCATTGCCCTGGTTATCCTGGCGTTGTAT # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //