Array 1 1023846-1024362 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP057481.1 Escherichia fergusonii strain RHB25-C10 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1023846 29 100.0 32 ............................. TTTTTGCCGTTCTTTCGCGTGCGCCGGGTGAC 1023907 29 100.0 32 ............................. ACATTGCTAACTACAGGCACCGTTTAAACAGA 1023968 29 100.0 32 ............................. CGGGCGTTCAGTTAATTTAACAATGAATATGA 1024029 29 100.0 32 ............................. CAGATCAGATTTTTGAAATGCTGGGATTGCAG 1024090 29 100.0 32 ............................. AAACCAGCAGTGGGTAGTTAAAATTCGCAAAC 1024151 29 100.0 32 ............................. AGGATTTGTTCTGCGATGAATAAATCAACAAT 1024212 29 100.0 32 ............................. ATGCTGATTGCTTTTTTAGATGTCAGCCCAGA 1024273 29 100.0 32 ............................. GCCTCATTCCTCGCGCTAATAAATTCTGGATT 1024334 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCTCGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCCATTTTGCCCATTCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GGGTTAGGAATTGCGAAAGCTGGAACTCAACAGTAAGCGTGCAGTGAGAACCGTATTGACGAAGTGAAGCTGGTCAGGCAGGCAGAGTAACCCGCCACGGGAGCAGAGCACCCACCCGGTTCACAGGCCAGTCGGCGATGACATCAAGTACATGATGCAGATAGCGTTCCGGATCCACGCCGTTTAATTTGCACGTCCCGATAAGACTATACAGTGACGCACCGCGCTCACCACCATGATCCGAGCCGAAGAACAGCCAGTTTTTTCTCCCCAGACTGACCAGTCGTAGGGCGTTTTCGGCAATGTTATTATCCACCTCCACCCAGCCATCTTCTGCATAGCGGGTCAGCGCCGGCCACTGGTTCAGCGCATACCCGAACGCCTTCGCCAGTTCTGAGTGCCTTGAGAGGGTTTTCTGTTTCTCCCGCAGCCACCCCTCCAGTGACGCCAGCAGCGGCAGCGCTTTTTGGTGCCGGACTGCCTGCCGTTCCTCTGCTCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1041943-1043861 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP057481.1 Escherichia fergusonii strain RHB25-C10 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1041943 29 100.0 32 ............................. GCTATGTGCATTCTATTTGTGAATATGTCCGC 1042004 29 100.0 32 ............................. GGGTACACGCATCGCCCTGGATTCAAATATTG 1042065 29 100.0 32 ............................. CGCCGCTTGAAAATTACACACCGGGTTTTTAC 1042126 29 100.0 32 ............................. CCCGCTGGTTATTGTGGTTAATGTCATGGTCG 1042187 29 100.0 32 ............................. GGCGCGGTACGCAGTCAGCGTTTACCAGTCTG 1042248 29 100.0 32 ............................. CCACTGGATCACCCGGTGATTGATGGGGAAAA 1042309 29 100.0 32 ............................. CAACTGGCGAAATACAGGACGAGTGGAAATTC 1042370 29 100.0 32 ............................. TTTTTGCAGCACCGGCACTGGCTGCGGCGGCC 1042431 29 100.0 32 ............................. GTATAAATAATACCGAAAATTTGCTCGTTTGC 1042492 29 100.0 32 ............................. CGCCAAAGCCAAGGCTTTTACACTTTGTCAAA 1042553 29 100.0 32 ............................. CAAAAAACAGGTTGGATGGCGGTACTTAGGGC 1042614 29 100.0 32 ............................. CGCCCGCGCCAGTAGTTAGCGTGACCCGGCTC 1042675 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 1042736 29 100.0 32 ............................. CCGGGGCTTATAAATGTACTGTTACTGATGCC 1042797 29 100.0 32 ............................. GCTGATTCTCGCGATAAATTGCGTAACCGGGT 1042858 29 100.0 33 ............................. ATCGGTAACTACGGCACAAAACAGGAGCACAGC 1042920 29 100.0 32 ............................. CTAATTCGACGCTGATTACCTGGAACGGCTGC 1042981 29 100.0 32 ............................. GTATTCACTCGACTCTGACGGAATCATGAACC 1043042 29 100.0 32 ............................. CATGATTTTCCTTATTTAACGTAAGCGGAGTT 1043103 29 100.0 32 ............................. TCGGGGGAACAATCCCCGCTGGCTCCTGGGGG 1043164 29 96.6 32 .G........................... GCGCAGTTTGCGTGTGGCTGAGAAATAAGGAA 1043225 29 100.0 32 ............................. CCCGGAGTGCGGAAACAGACCAGAATACGCGC 1043286 29 100.0 32 ............................. AAAAAATTATTAATTCTGGTGGCACTGGTCGT 1043347 29 100.0 32 ............................. GCTAATGCAACGTGGTTTTCTGTGCTGGATAT 1043408 29 96.6 32 .........A................... AATTTTACTGATTCAGCAGGGCAAATGAAATC 1043469 29 100.0 32 ............................. ACGTTTGCCAGTAATTTGGCTCGTCATGCAAT 1043530 29 100.0 32 ............................. GTTTTTGCTGCTGCCAGATTACCGAATATAAC 1043591 29 100.0 32 ............................. TTTGGTAGGAAAAAATATCACTGGTATATCTA 1043652 29 100.0 32 ............................. CGGATATCGTCGCCGGTGGGGCGCTCCCAACC 1043713 29 100.0 31 ............................. CTGCTCATTGCCATTGCCCCAGAATACCAGC 1043773 29 100.0 32 ............................. GTAATGCACTCACCACGGTTACAACAGATATT 1043834 28 86.2 0 ......................-.CT..C | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGGCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACATTGGGCGATATCGGTCACCGGGGGCGCGGCGGGTGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTCCTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCCCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAGTTTCAGACCTGGGGTGAGAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGAAATAAAGTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : CAGCTCCCATTTTCAAACTCCTCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //