Array 1 79845-80806 **** Predicted by CRISPRDetect 2.4 *** >NC_010376.1 Finegoldia magna ATCC 29328, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 79845 36 100.0 30 .................................... TTTATCCTCGTCAAACTCTTTTCCACACAC 79911 36 100.0 30 .................................... TATGGTGGAGATGAGGAGTATCGTACGAAC 79977 36 100.0 30 .................................... AGTACGAATTTGGATTTACTCCAAACGACG 80043 36 100.0 30 .................................... GGATTAGGTGAACATACAATTACAGTTACT 80109 36 100.0 30 .................................... TCAAACTTGATGAGGTCAAGGATTTGATTT 80175 36 100.0 30 .................................... ATTTCTACACGATTTGTTTCATCATTTGAA 80241 36 100.0 30 .................................... TTGCTATTTTTGTTTTAATCTTTAGTTCCC 80307 36 100.0 30 .................................... ATACTGATTAATCTGAATGGTTTGAGTGAT 80373 36 100.0 30 .................................... ATTGTTTACAAGCTCCCGAATATAAGCTTG 80439 36 100.0 30 .................................... TGGTTATAAAAAACCGAAAGCAGAAGTGAA 80505 36 100.0 31 .................................... TTTGATGACTACGAATTGCAAGCAGTGTATA 80572 36 100.0 31 .................................... AATGATAATTTAAAAGAATACTTAATTTATA 80639 36 100.0 30 .................................... GAGTAAAACATAAAAAGATTGAGTATGTTG 80705 36 100.0 30 .................................... CTGAAAGTTTAGGATTGACGTTCGAGGACA 80771 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 15 36 100.0 30 GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC # Left flank : ACAAGAAAATCACTACGAAAATTATTAAAGATTTAATGGAAATTATCTCAGATGAAAAACATTACGAACAAAAAATAAATTTAAACTCATCGATTGTTAATTTTATTAACGACATTACACTAGATTATCCGTATATGCTAGAAATTGGTGATGAAATAAATTTTGAATCTTTATTAAAAGTAGTACCAATTAAACCAAGTGTAGACTACACAGATTTCCTGGATAAATTTGTTTCTTTTTTAGACATTTACCAAAATGTTTTGAAGATAGATGTATTCTACACAATAAACTTATTGCAGTATTTTACAGAAGAAGAGCTCAAAGAATTATCTGATTACATTAAAATTAAGAACATTTGCATAATAAATTATGATAATATATTAGTAGATAGCAATTACATTTCCAAAAAATTGCTGTTTGATAATGATTTATGCAGAGTTTTATAATTATCTATATAAAATTACCACTTTGATGGAGTGATTCTACCTCATGGATTTGAG # Right flank : CATCTTCGTCCACGCTTTCAACGTAACTCATGCTTAAGAATGATATAATTATAGCGATTAAGAGGTCAAAGAGGTGCTTTGTATGAATAACAAAAACGACATAGATAGAGTTCATGATGATGTTTTTAATAGCATAAAAATATTGATGGATAAGGCAAGAAATGAAGTTTTTCGTGAAGTCAATAATATTTTGGTGCAAACTTACTGGGAGATTGGACGCATTATCGTAGAAGATGAGCAAGGTCATTCAGAAAGAGCAGAGTATGGGAGAGAGCTTATAAATGACTTGTCAAGGCAACTTACAAAGGAGTATGGTAAAGGATTTTCTAAGTCTAACTTATTTAATATGAGAAACCTATATTTATCATATCCAATATTCCAGACACTGTCTGGAAAATTGACCTGGTCACATTATTGTGAACTCTTATTCATTAGCGATGAGAAAAAAAGAAGTTTTTATGAAAAAGAAAGTATCAACGCAAACTGGTCAGTAAGAGAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 45598-46284 **** Predicted by CRISPRDetect 2.4 *** >NC_010371.1 Finegoldia magna ATCC 29328 plasmid pFMC, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================= ================== 45598 27 92.9 33 ................-......A.... TTGTGCTGTTTTAGGGCCTCCAGTATCTTCCCT T,T [45612,45619] 45660 28 100.0 33 ............................ CTCAACACCGTTGTTGTTATTTACATTATTAAC 45721 28 85.7 33 ..A........T...CT........... CTGTGGACAAAATCTGTAACATAACAATCCTAT 45782 28 96.4 81 ..A......................... CATTGTTAATGTTAATGCTTTGGGAACACACCTGCTATTGCAAGAAAACTTAGGATTATTTAATATTTTCTCAATAACCTC 45891 27 85.7 33 T..........T....-...T....... TAAGTATTTATTACGAAAAGTTCATAGATAAAA T [45904] 45952 28 100.0 32 ............................ CTTATTCGATTCTTCATTTTTTTAGTTCTCTT 46012 28 92.9 33 ..............T.T........... CTTATTGTTGAAATTATCTTTGTTTTTAGAGTT 46073 28 89.3 34 ..A..T....................C. TGCTGTGTCAAATGCAAAAGAAGATGTTTTAAAT 46135 28 100.0 33 ............................ CATAAAGTTATAATTATAATCTTTTTTTATAAC 46196 28 96.4 33 ..............T............. TCATAGATACTTTTTTCGCTCCTTGAAATAATC 46257 28 89.3 0 ..A...........T............C | ========== ====== ====== ====== ============================ ================================================================================= ================== 11 28 93.5 38 AGGAACACCCCCGCATGTGCGGGTAAAA # Left flank : TGTATGTAATATAGCGTAATTATTGAGGGTGCGAACTAGTTATTCTATCTAGCTAATGTACCAATAAAAAAAAGAGAAGAAATAAATCTTCTCTTAATTTCACTTATTCTACTGGAACTAGTTCGTATTTTTCGATTTCTTCTTCTGTCAGTTTTCTCGAATATTCGATTATGTCGTAGTATTTATCACTAGATTTGTCCGACAATCCCAATAATCCGTCTTTTGGTTGACAACCCAGAGAAAACCCACGTACTTTCATTCCATACATATATTTCATGACCTACTCTCCTTTATCTCTTTGTTATATGTAATATATCGACAAATGACAAGTAGACTAATTATATGTAGCACTATATGATGTACCGACACTCGCCATTGCGAGAAAAAATAAAGGATAAAAATATTCTTGGACTACACTCGCTATTTGCGAGAAAATACTCTTAAATATAAAGAAACACACTTGCCATTGCGAGAAACTTATCTTGATAATCCTCATACAT # Right flank : CAAAGATAATAAAGATTACGAGTTTGTTTTTATCCCATATAGAGGGAAACACTCGCTTATTGCGAGAAACAATTTTTTGGACACTTCCAATCGTCACACACCTGCTATTGCAAGAAAGCTAGTTTAGATCGCCTCTTTTTCTTTTATATCCAAAGCACTTATACGCACCCTCTTTGGACTTATATCCATATCCTTGAGCATCGTCTAAAATCTCGCCTGTTTCTATGTCTACTATAACATATCTGTCATGACCATGTTTGCTTTTTTTAGTCAACTCAGAATCAACAATTGCCTTGTAATTATTAATCATAAATTATCTCCTTTCAGCTATTGGCAAAATTGTCATAAGCCCATATCCATAAGCTTTTCTTTTGCCAAAACCATTAATTAAAATTTCTTTAAATTTATCCACATCTTTAACAGCTAAAACACCCTCAACTACAGCTTTGTTGACAGGAGCTTTTTGATTATCTTTAACTAACTTATCATAACCTGATTGA # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGGAACACCCCCGCATGTGCGGGTAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //