Array 1 18-1246 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQEB01000019.1 Yersinia pseudotuberculosis strain OK5586, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 18 28 100.0 32 ............................ AGATTGCACAACTCAATAACTGTCAGCAACTC 78 28 100.0 32 ............................ GTATACCCTTGGCTCTTTCATGGCTTACCTGA 138 28 100.0 32 ............................ ACGCGACTCCATATTCATGAGGGCGTCGCATC 198 28 100.0 32 ............................ GAGAAAACCCAACAGAGTAAACAATATGAGCA 258 28 100.0 32 ............................ ACAGGCCCCCGTACTGGTCCCGGCATTGGGAA 318 28 100.0 32 ............................ TGTCTTTGTAGATGTCTCGCGCACTCTGTAAA 378 28 100.0 32 ............................ AAAATGCGGGTAACGCTGCCCGAGGCCCAACC 438 28 100.0 32 ............................ AGCAGCAGTTCGGCACGGGTAGGCTGTGTGCC 498 28 100.0 32 ............................ AGACCGCGCCGCTGCTGGGCTGTTGCTGTTTG 558 28 100.0 32 ............................ TGACGGCTTAATTCTTCATCAAAGCGCAATGG 618 28 100.0 32 ............................ AAAGACCGAATGCAATGGCGCAAGAAGATGCT 678 28 96.4 32 ...........T................ GTGAAGGAATAACGCCCCTGCATGTTTATATG 738 28 100.0 32 ............................ TGAAGCCGCTGGGCGCGTTGTACAGCTAGTCG 798 28 100.0 32 ............................ CTGAATGGAATGTGATCGCCTGTTCATACTCT 858 28 100.0 33 ............................ CCTGATGCACCCAGTTCCCGCAACGCATCAAGT 919 28 100.0 32 ............................ CGCAGTGACCTCTTTAAACGACTTGGCATCAA 979 28 100.0 32 ............................ AATAAATACCCGGTCCCCCTGCTTCGGTGGAG 1039 28 100.0 32 ............................ GGTCGAAAATGGCGCACCGTTCGCACTGATGC 1099 28 100.0 32 ............................ GTGATGGGGATTTCTGCCGGGCGGTCAAACAG 1159 28 100.0 32 ............................ AAGTCCCAACAGAGTTTTGTAGTAATTAATGG 1219 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGGGTAGGCTGTGTGCCG # Right flank : AAAGAAGGCCCAAGCGTTGATTACGAAAATGTTTCGCCGGGCACGAAAAGTGTTGCCAATATGTTTGATAATATAATGCATTACTAACTCTTTTTTATGTGGTTTTACCCCATGTCTCAGCCAGAGATAATAAAAACACCCATTAACGGAATGGTAATTAGTGTACTAATTGCCATAGATAATACATTTCCAACATAAGGATGAATATCACTAGGGAGTCGGTCTGATATAGCCGCTGCTAAAGGAGGGGCTATTAATGCACCTAGTGTGGCCGCCATAATAATAACCTGTACTGTTCCGCCATAAACCAAGACCGCAGCAGGTGCCACCGATACAACAGGGACATATGTAGGGTACCAGCCTCGGGTGATCCATTGTTTACGCCAGACGACGACTCCGATTGCTGATGCAAGAGCCTGAGCGGTGAGTACCTGTGTTAATAATCCACTACCGTATACCGGCAGTGCTGGATTTAAGGCTACGGCTAATAGAATGCCAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 69801-70190 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQEB01000011.1 Yersinia pseudotuberculosis strain OK5586, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 69801 28 100.0 33 ............................ ATCATGATAAACTTGGATATTTCTATAAATATA 69862 28 100.0 32 ............................ CGCTGGATATAGACCAAAAAGGAGCACTAGAT 69922 28 100.0 32 ............................ TGATAGGGTACATGTGTTCTTAAATTTCTAGC 69982 28 100.0 32 ............................ AGAATCAGCAAGCGCCCAAATCAGGTTAATGT 70042 28 100.0 33 ............................ GAATATAGGAAAGAATTTGAAGAAAGGTTTTTA 70103 28 100.0 32 ............................ AATCTGGCGGCGCATTATCTGGTTTTATGTAT 70163 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGGTCGACGATGTGCTCACGCCGCTTTAACGTATTCATACGCCAACCTTCAACCTTTGGTTATCCGTAAAGTAATTACAACAAAGAACGCCAATCAGAATTGCCACCTGGCTCACAGTACAAAACTTGCTATAAAAACCCTAAAAATCTTTCGATTGGTCATCAATCGAAAGATTATGCTAAGAATATAAGAATGGATAATGGGGAGTGAAACCAGAAATGGCGGAGTATTCGATTCAGTAAAGGGAAAGAAAGTGAAAAAATATAGGCTAAGGGGAGTGGTTATCGCTTTAAAATCAGCCCGTGATAAAGATCACAATAATAACTCATGGGGATTCTTAGCCTATTCACATCAGGGGAATCATTTTTTAACCCTATTTTTTTAGCTATGGCTAACTCATTGATTTTATATCCTGCTTACCGAGGGTTAAAAAAAATCATTTTTTACCCTTTGGCGAAATAATTATTTTACAAACAGTCTGTTACCCGTATTATCTTACT # Right flank : ANNNTACCCAGCTTGACGGTGCGGTGATTGGCAGCACGGCGACGGCCGATAAAAACACGCTGGATACCGGGACACTGGGCTTCAGTGATATCGATAATCAAGCCGATTTCAAGGTTGAACATCAAAGTGTGGGTATCAGCACCGGGGGGAATATTGGCAGTCAGTTTGTTGGCAATATGGCCAACGGCTTGCTGGTCGGGGCCAATAACGAAGGTCACGCCGACAGCACCACCCATGCGGCCGTTTCTGAAGGTACGATCACGGTGCGCGACACGGATAACCAGCAGCAGAATGTTGATGACCTGAGCCGTGACGTGGAGCAGGCCAACAATGCCCTTTCCCCTATCTTTGATAAAGAGAAAGAGCAAAACCGACTGAAAGAAGCGCAGCTTATCGGCGAGATAGGCAGTCAGGTGGGGGATGTGTTCCGCACACAGGGGCAGATTATCGCCACCCAGGCGGCGACTGAAAAAATGCAGGGGAGACTACACTGTACTTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 86038-87808 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQEB01000011.1 Yersinia pseudotuberculosis strain OK5586, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 86038 28 100.0 33 ............................ CTGACGTTCGATATTCAGGTTTGTTTCGCAACA 86099 28 100.0 32 ............................ ACGAACAAGTAAAGTTTTGCCGATAACTTCTT 86159 28 100.0 32 ............................ GACGCCCTCGCCAGAAACCAAGAATCACAATC 86219 28 100.0 33 ............................ CAGAATAATCAACGCCATTAGGGTTTAAAGGTA 86280 28 100.0 32 ............................ TCCCCAAGTACCACCAATAGACTCCCAATATT 86340 28 100.0 33 ............................ AGATACAGGCGAAACCATATTTTATATGAACCC 86401 28 100.0 32 ............................ TGTTTTAATTACGGTAACATTAAAAGATTTAT 86461 28 100.0 32 ............................ AACTATTATCACTCACCCTGTTACATTCTGTT 86521 28 100.0 32 ............................ ACTGTGAAAGATGGTCTAATATAGATTGCGAT 86581 28 100.0 32 ............................ AGCAACTAAAGAAGTTATCGAGTCATATATGG 86641 28 100.0 32 ............................ CTAAACGTATTTCTAAGGGTGATTTCGTTTTA 86701 28 100.0 32 ............................ CAAATCAAATTAATGTCTTCGTCCGTCAGTCG 86761 28 100.0 32 ............................ TGTCCAGCTAAATATAAATGGGAGGAGCGAGA 86821 28 100.0 32 ............................ ACTGTGAAAGATGGTCTAATATAGATTGCGAT 86881 28 100.0 32 ............................ GCAAACGCTAGAAATTTAAGAACACATGTACC 86941 28 100.0 32 ............................ TGTTACCGTTCCTGGACTACCGAATACGACAG 87001 28 100.0 32 ............................ TTGCACCGTATCAGCTTTTAATGCATATAATG 87061 28 100.0 32 ............................ TGCAGCAAATAAACGAGCTGGTAGAAACTCTG 87121 28 100.0 32 ............................ ATTGGACATTGTTAAGAAGATTATTTCCGAAC 87181 28 100.0 32 ............................ GGATAATTACGACCCGGAAACGCGCACATATG 87241 28 100.0 32 ............................ AGTATAGGTAGAAGATGCAGCACGTTCAACGG 87301 28 100.0 32 ............................ TTTAGATAGAGACACTATGCATCCCCTGCTTT 87361 28 100.0 32 ............................ ACATAAGGAAAAGGCCACCTATGTGAGGTAGC 87421 28 100.0 32 ............................ GGTGTACTGCGTGAGGCTAGGTGGCAAGAAAG 87481 28 100.0 32 ............................ TCGCTGGCTAACGCTAACCTTGCGAATATGTC 87541 28 100.0 32 ............................ AACATTATACCTGCTTTGGCATATCGGATATC 87601 28 100.0 32 ............................ TGATGGCATTAGAAGTAAAGCTCGAAATGGAT 87661 28 100.0 32 ............................ AATCTGGCGGCGCATTATCTGGTTTTATGTAT 87721 28 100.0 32 ............................ AGAATCAGCAAGCGCCCAAATCAGGTTAATGT 87781 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 30 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGGTTGTTGCCCAGCGAGGGGAGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATGAACAAAATAAGCCTCTAAAAAGAGGAGTACGTTCACTGCGCACAGGCAATAATCAAATTCTGGACCATGCGCTGATGCTATTTGGGGATCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 83710-83857 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQEB01000020.1 Yersinia pseudotuberculosis strain OK5586, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 83710 28 100.0 32 ............................ AATCTGGCGGCGCATTATCTGGTTTTATGTAT 83770 28 100.0 32 ............................ GTGTCGGTTTGTGGATTCTTGAAACTGAAAAA 83830 28 85.7 0 .....................CC.AT.. | ========== ====== ====== ====== ============================ ================================ ================== 3 28 95.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGTTATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGCCAGAGCGTATTGTCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAAACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCCCCCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCGATTCTTGTGACCCTCTTTTTATCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAGGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACG # Right flank : ATCTCAGCTCTCTGGCGGCGCTTTATCTGTAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCGCTGTCGTTCAAGGTATTTGGGTAGTTACGGGCACGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGCAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGTGGGTTTTGCCGCAGCAGTTGTAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //