Array 1 16660-16024 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQMN01000002.1 Geobacillus subterraneus PSS2 N671DRAFT_deg7180000000003_dupTrim_10317.2_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 16659 30 100.0 37 .............................. TATAAAATTCCAATTTTATTTTGAACATCGGCAATAG 16592 30 100.0 36 .............................. ACAAAAATCAAATCCTCCGCAACGTGCAAAAGTTGC 16526 30 100.0 39 .............................. GCGAGAGGTATTTCCTCGATGGCTTCGGCTGTTGTAGAA 16457 30 100.0 39 .............................. ATGACATGGTCTATGTAGCTATCGGAAAAATTGCCAACG 16388 30 100.0 39 .............................. CCGTATATAACGAAGCTGATCGAAGAAACCCCGAAAAAG 16319 30 100.0 37 .............................. CGATATATAAAAAGCGACAGTTGCCCCCTCGTATAAC 16252 30 100.0 38 .............................. TCTATTTGTTGCGATTAAATCAATAAGTGATTTATGGG 16184 30 100.0 35 .............................. ACGTTCCTAAGAGTGAACTGGGGGCAGAGGCGGTC 16119 30 100.0 37 .............................. CATTCAGGACAATCTAATTCAAAAGCGATGCGGTCAA 16052 29 86.7 0 ....................-..GC....A | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 98.7 38 GTTTTTATCTTACCTATGAGGAATTGAAAC # Left flank : CGCCCCGGGGACCCGGACCAAAAGGAAACGGAAGCGCCGGCGAACATGGACTTGGTTCCATTGATCTCTTTTTTTGTCATGATTTGTCGAAATATGTATTTTATATTTTTGTCAGACAGTAAATGTTTTAATATTTCTCATAATATGGGCTGGTAAAAATAAAAAAATAGGCACTTTGCTAAAAAATGACCGCCCAAATTCGCCTGTATCGCGTTTTAATCGATAAGGTAATGGTTTTCTATTCAAGAAAGAAAAAATGTTTGTACGGACCGTTTTTCGAGTTTAACGCGGTTTTCATGTTTTTATGAAAAACAACTGCTTCAATCCTTTCTGTCGTCGACTTCCAATCGTGCAAAAACTCCGGGGGATCGACGACAGTTTCTTTTTTTCTTTCCTTCCTACAGCCATCAGCGATTCACTCTATTGACGGAATTTTCGAAATGGAGTATACTGGACTTGACCTATTTTGAAAAGTGTTGATGTATCAACGCTTTTTGGGG # Right flank : ATAAGACTAACGCGAAAACCCGCTGATTTTTTCAGCGGGTTTTGTCATCGGCTCAACACCTTGCGATCAGGCGTTTTTCCTTTTGATTGGGTTTTTTTCTTTCCTTCCCGCAGCGATGCGATGAGTTGCTGCCTGAAGTTGCTTCGCATGGTTGCGGGATGAGTCCGCTTGCACGATGCTTCTTTGAATGGACCGAGCGCCGGGCTTCCCCAGGCTCCGGCCGGATGGCCAAGGGCCAGAAGGCGGCCAGCCGGGAAGACCGGCGCGGAAATGGAATCTTTGTTCGAACCACGAAACTTTTGTTTGTTGGAAGAAAAGATGAAATAAACGTTTATTTATTGTTTTAATTATTTTAATGTATACTCTATTATTTTTATCATCACTTATTCGTTTAATGATTTGTTGCTTCAAGCAGCGGTGCAATGCATTGGCTTCTTCGGCCACGCTCCGCACGGCTATGGATGGTCATGCTTGCAAGCGGCATCCGCGGACAGGCCGGC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 8054-8353 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQMN01000001.1 Geobacillus subterraneus PSS2 N671DRAFT_scf7180000000004_quiver.1_C, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 8054 36 100.0 30 .................................... TTTCTTGCCGGGGGAGTATAAATCATCATC 8120 36 100.0 30 .................................... ATTCTTTTTCGTATTCTTCTTTTGTTATTT 8186 36 100.0 30 .................................... GGCACTGGCAACCCAATCCGGCCAGCGTTC 8252 36 100.0 30 .................................... TGATCCATTCGCAAAGTCGTAGCCATCATT 8318 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 ATTATACCACAGCGATAATCTCAGGGGAACTATGAC # Left flank : TGGTCAGCAGCTCGATCCAAGACACATCCCTTGTCCCGAAAATTTTGGTCGTTGGCGGCCCGATGCGGGAAGAAAAAAGCCCTCATCGCCACGGCTCGACGAATGTTGGTGATCATCTTTTGCATGATCTCCCGCAAAGAGTCGTTCCGCCAACCACAACTTATCTAGTATAGCCAACAGGCAGCCAGATCATACGAGATGTCCGAAAATCGGGCACCTCTGCTTTCCTATTGCCTTCTTTGGCCATTTTCAGTATACCCGCACGGATCAGGAGCGTATACAGCACTCACCCAGTGGTGGGGATTTTCACGGAAAAGCAGTACGCAAAAATGCAACTGCTTCTCGGGGAACCAACAGCCCAAGAAAAGAAAATGACATCCACACAGCTGACACTTTTTTAAAAAACGGAAATGGTTCCCCCTATTGCATAGACACATTCGTATTTTTTTAAAAGCAAAAAAGCCTGCGATCCTTGAGATTGCAGGCTTTTTTGGATACGT # Right flank : CAAGAGCGGAATTTATCGCCTCCATCCAGACGTAAAAATCACAACTCACTGATGCGATTTTCACCCAACAAAAAGGCGGTGGATGACCGCCTTCTTCTCTATTCTCAATATTCATTCAACAGGAAACACTAGGGTGAGATCGATCACCCTTTTCCTCTTACTCGCTCAACAAGCTTCGAACCTCTTCTTCAGAAAGATCCACCAACTGGGCAATCTCGGCGGCCGTCATCCCTTTTTGTGCCATCGTCTGAATAAGCCGCTTCATTCCCTGTTTCATGCCTTGTTCCATTCCTTGTTTCATCCCTTGCGCAAGGCCGCGTTTTACCCCTTCTTCCAGCCCTTCTTTTTTCCCTTTTTGCTCGTAGGAGATGATCAGCTCCAGCACTTTCTCTCGTTCTTTCGTTTCCATCGCCTTCACCTCGCTTTGCAGCTGTTGTTCCTCTTCCTCCGTCAACTTCACGTACGTCTCAAAAAACCCAAGCAGCAGCCGCTGCCTCGCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATACCACAGCGATAATCTCAGGGGAACTATGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 10964-9487 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQMN01000001.1 Geobacillus subterraneus PSS2 N671DRAFT_scf7180000000004_quiver.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 10963 30 100.0 35 .............................. GCTGCCCCTACAAGCGGAACATATCAAGTAGGAGA 10898 30 100.0 35 .............................. TCCAGCGACAGCAACTCGGCGAGCCCATTTTGCTG 10833 30 100.0 34 .............................. GCCGAAATGTACAAGTTGTCGTTCCAGGATCGCG 10769 30 100.0 38 .............................. TACTTCAGCATCGCCTTATCCATCGCATCTTGGTTGAC 10701 30 100.0 35 .............................. CAGCATTGGCTATAACCATTCGGATCCTTATTTTC 10636 30 100.0 35 .............................. GACGATACGTCAACGATACGTACCACGTTAAGTGG 10571 30 100.0 35 .............................. ATTTTCGATAGAATACAATAAACATAGGGGGGTGA 10506 30 100.0 38 .............................. TATATCTAACGATAAGGGAAAGAAATATTACTATTACA 10438 30 100.0 34 .............................. CGTGCACAAAAACGCGTAAGGGGTGACGGGACAT 10374 30 100.0 35 .............................. GGTCATGCCAGCATAAAAATGACCGCTGACACGTA 10309 30 100.0 35 .............................. TCAGTTGGCTGTTCTTGCGATCGGGTGGCTTCCTG 10244 30 100.0 36 .............................. GATGATGTTGTCCATAAGAAAAACAGATCGTAACTT 10178 30 100.0 36 .............................. CTTGTCCGTTTGCGAGATCAGTATGAAGTCATATCC 10112 30 100.0 35 .............................. AAGGTGCCGCTTGTATCAAATATGAGGGACACCTA 10047 30 100.0 35 .............................. GATGTACAAATGAAAACAAGCACAGGGACATTAAC 9982 30 100.0 37 .............................. TTTTTCCTAATCCTCCTAAAGCCGCCGGTTTCTCTTC 9915 30 100.0 38 .............................. TGCAATGATTGGTAAAGACGCTAGAGAGATGGAGGAAT 9847 30 100.0 39 .............................. AATAATTCATAAAGGAGTGTATCAAATGAAACGCATTTA 9778 30 100.0 35 .............................. TAGATAGTCCGACATATTTGTTCGATGACGCTATC 9713 30 100.0 35 .............................. CTCGGTTCGCCTTGCGTATTCGGTTGCCCTCCATC 9648 30 100.0 35 .............................. TCCTTTGCTTGATATGTCCCGGCTTCTGCGTATTG 9583 30 100.0 37 .............................. AATACATCGCCGTGCGGGCGCGGAAGGTGGCGTAGTC 9516 30 70.0 0 ..........C..T.....C.A...TTTCA | ========== ====== ====== ====== ============================== ======================================= ================== 23 30 98.7 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GTATGAAACGATCGATGGCAAAAAGAAAACGCATTTTTTCGGGCCGGACGACGACGTCTTTCCCCACCTCGTGGAGCTGAATTTCCGCCATAAATACGAAGCGTACTATGGCGTCGAGCCAGAAGAGCGATTGATGATCGAGCCTGTCCATGTCCACCACCGTCATCGAGTGGTAACAAGATTCAAAGATATGTATATTACCGGCTGGTTAGGCCATTATCGTCTTTCCTCTTCTCCCGAACAACTGACGTTTCTATACCACGTTGGCCTAGGCAGCCGCAATTCCCAAGGATTCGGCATGTTTCGGTTAATCAGCGAGTGAGCCATTCTAATTGTCGTCGACCTCCAATCGTGCAAAAAACCTAGGGGGTCGACGACATTGGTTTTGATCGCTTGATCCCTACAGCCATCATGGTTGAACTTGATTGACAGAATCTTCGAAACGTGTTATTCTGATAATGACGTTGAAGAGAAAAGGTTGATATGACAACACTTTTTGG # Right flank : CTGTGAGCAGGATGTTGCCTTGGGGACGGCGAATAGAAAAAGAGAGACCGTCAAGTTGAGGTGATTGAATGGCGATTGACCATGATCGGCTGTTCAAAGAGCTGATCCGCACGTTTTTCGAAGAGTTTCTGCTCCTCTTTTTCCCCGATATGCACGAGCATATCGATTTCCACCATCTGTCCTTTTTATCCGAAGAGCTGTTTACCGATGTGACGGCCGGTGAAAAGTACCGCGTTGATTTGCTGGTCGAGACGAAGCTGAAAGGCGAAGACGGGCTGATCATCGTGCACGTGGAAACGCAAGGGTATGTCCAGCCGTCGTTTGCCGAGCGCATGTTCCTCTATTTCAGCCGCTTGTATGAAAGTTACCGGACCCGCATCGTTCCGATCGCCGTCTTCCACTATGATTCCCTCCGCGAGGAACCGTCTGTGTTTTCGATGGAATTTCCGTTTGGGGAAGTGCTGCAGTTTCGCTTTTTTCCGGTGGCGCTGCGGAAGAAG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 22805-21120 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQMN01000001.1 Geobacillus subterraneus PSS2 N671DRAFT_scf7180000000004_quiver.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 22804 30 100.0 37 .............................. GTAATACAACCCCATGGTCTTCTGTTTCGATGACTTC 22737 30 100.0 36 .............................. TTTAGTAAGCTATCAATATAGTTGAGTTGCTTCTCG 22671 30 100.0 36 .............................. TAAAGGTTCCGCATCTTCATTCGATTGAATCGGCCC 22605 30 100.0 35 .............................. TCGTCAACATACAGTTTATACATGCTTTTCACCTC 22540 30 100.0 37 .............................. TTCCAGGCAAGAAATCATCCGAATTTTAGAAGAGGGG 22473 30 100.0 36 .............................. TAAGGCAAAATGACAGGTTTCCCTGTTTCCTTGTCG 22407 30 100.0 34 .............................. TATGAAGGTACAGACATCGTTGAATTTACTGACG 22343 30 100.0 38 .............................. CTTCATGTTTCCGTTTCTCTTTTTCATCCAGGCATTTT 22275 30 100.0 36 .............................. ATCGTGACGAGTACCATGTCGCCATCTTTCACTTGT 22209 30 100.0 35 .............................. AGGGATCGCTCCCTTTATCGCCGGCATGAATGCAT 22144 30 100.0 36 .............................. TGAACGCGAAGCGCAAAGAGCAAGCCAAAGCAGAGC 22078 30 100.0 37 .............................. AATCATCCTCCCTATTTAATTTTCAATGTTCAATTGA 22011 30 100.0 36 .............................. CCAGCAAATTTTTTCATGAAATTGTTGCATTTTGTC 21945 30 100.0 35 .............................. TGCGTCGGAGCTGTGGCACAGTGACGGCGAGTAGC 21880 30 100.0 36 .............................. TCTAATCCGTATAGATAAATTGTGAAATCATCTTTC 21814 30 100.0 35 .............................. GGTTCATTCAAAATTAACTGGACTGTCCCCGGAAG 21749 30 100.0 38 .............................. CGGTAAACCTCGACGCGGTATTCGGGGAATTCGTTTTC 21681 30 100.0 35 .............................. ATTGTATGTGTTTCTGTTTTTTTGCTGGTTTTTGT 21616 30 100.0 36 .............................. TGCTAAGAGCACGATGATCTGGGATAAGCTCGTGAC 21550 30 100.0 36 .............................. CCCCTATGCCTGCCTCCCACGCACAGTGCTGATAGG 21484 30 100.0 38 .............................. AATGAAAGGAGAAATGCAAAATGGAAAAATTAGTTTGG 21416 30 100.0 36 .............................. GAAGGCAAACAAGGACTAATCCAAATAACGGCGGAA 21350 30 100.0 38 .............................. ATTCCCTAATCAAGTTCCGCCAGCCGTTTTGGATGTTG 21282 30 100.0 36 .............................. CCCGATCCGCTTTAATACCAGTCATTGCGTCAGCCG 21216 30 100.0 37 .............................. AATACATCGCCGTGCGGGCGCGGAAGGTGGCGTAGTC 21149 30 70.0 0 ..........C..T.....C.A...TTTCA | ========== ====== ====== ====== ============================== ====================================== ================== 26 30 98.8 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : ATGCGGCTTGAACAGCGGAAAAAAGAGCAGGCATTGCTGGAACAGCGGAAGCGCGAGGAAGAAGAACAAGCAAAACTTGCCCTGCTTTCCCCAGAAGAACGGCTTGTCGCTGAAATCGTGCAGCTCACCGACAGCCAAGCCGATCAACAGCGCAGCAAAGACGCTCTGTATAACCAAGTCATCCAACAACAAAACAAACAAGCCGCCCAAGCGCTGCTTGCGTATTGGCAACGGATCGGCCAATGGGGAAAAAGCGCCAGCAAAAAGCAAAAAGAAAAAATCAACGTCCTTCAACAGCTGCTTAACGGCTCATAACCAAACCGCCTTTCGTTTGTCGTCGACCTCCAATTGTGCAAAAACCCTAGGGGGTCGACGACATTGGCTCTGATCGCCTGATCCCTACAGTCATCAAGAATAGATTTCATTGACAGAATCTTCGAAACGTGTTATTCTGGTGATGACATTGAAGAGAAAAGGTTGATATGACAACACTTTTTGGG # Right flank : CTGTGAGCAGGATGTTGCCTTGGGGACGGCGAATAGAAAAAGAGAGACCGTCAAGTTGAGGTGATTGAATGGCGATTGACCATGATCGGTTGTTCAAAGAGCTGATCCGCACGTTTTTCGAAGAGTTTCTGCTCCTCTTTTTCCCCGATATGCACGAGCATATCGATTTCCACCATCTGTCCTTTTTATCCGAAGAGCTGTTTACCGATGTGACGGCCGGTGAAAAGTACCGCGTTGATTTGCTGGTCGAGACGAAGCTGAAAGGCGAAGACGGGCTGATCATCGTGCACGTGGAAACGCAAGGGTATGTCCAGCCGTCGTTTGCCGAGCGCATGTTCCTCTATTTCAGCCGCTTGTATGAAAGTTACCGGACCCGCATCGTTCCGATCGCCGTCTTCCACTATGATTCCCTCCGCGAGGAACCGTCTGTGTTTTCGATGGAATTTCCGTTTGGGGAAGTGCTGCATTCCGGTGGCGTTGCGGAAGAAGCAGTGGCGGGA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 35136-32507 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQMN01000001.1 Geobacillus subterraneus PSS2 N671DRAFT_scf7180000000004_quiver.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 35135 30 100.0 37 .............................. ACTTGGATGACTACGTAACGCGCAAAATCGCTCGTGC 35068 30 100.0 37 .............................. GGATATTGTTTTTCTCCCGTTCCTTCCAGGCTTCTAA 35001 30 100.0 37 .............................. AAAAAAATATTTTCAAAGTGTCGTATAACGCCTATAA 34934 30 100.0 38 .............................. TGAATTTTGGGGACATGGTAAAGCTGTTGGTCATAAGA 34866 30 100.0 35 .............................. TCTTCTTCGAGAGCTTTGATTTTTCGTTCCTGCTC 34801 30 100.0 38 .............................. CTAAGCGCAATTTCGAGAACGAGAAACGCTGGTTCGAG 34733 30 100.0 38 .............................. TGGTATTTCTAGGCTCTTTAGGTAGGCTTGAAAGGAGG 34665 30 100.0 37 .............................. TTTTGGGATCACTCCCCTTATCGCCAGCACGAACACC 34598 30 100.0 36 .............................. TTAGAAACAAAATTTAATGAAGCATACGAGCAATTA 34532 30 100.0 37 .............................. GGTATAATGGAAATCTACTAATTTCATTGTCAACGTA 34465 30 100.0 36 .............................. GTCCTCCTTCAAATCAACGTCAAGAAGCTCGGCTGG 34399 30 100.0 36 .............................. TGCGGAAGCCAATCGTGGGCAGGCGCCAAGCTACGC 34333 30 100.0 38 .............................. ATTTCGATGAACCGAACATCACCGAACATCGGATGATT 34265 30 100.0 35 .............................. TCCGTTCCGCCATCCGGCACGGTGGCGAGGGTCGC 34200 30 100.0 38 .............................. TACAAAGCAAAAGCAACCTTTTACACTTCGGCAAAAGG 34132 30 100.0 35 .............................. ATCGTTATCAACTTCTGTTGGCTCACATTCTTCGC 34067 30 100.0 36 .............................. TTCGTGTTGGCACTCAAAAGGGAAGATCCTCATCGT 34001 30 100.0 35 .............................. GCGGCATTGGAGCGTTTGAAAAAGCGCTGCAGCGA 33936 30 100.0 37 .............................. TTCCTGACCTGAACAACTCGAACGGGGTTGGGCGGAT 33869 30 100.0 36 .............................. TTTGTATCGGTTTCACTAGGTTCAATAAAAGTTAGA 33803 30 100.0 36 .............................. ACTTTGTGAAGCTGGGAGAGGAGCGGAAGGCGTGAA 33737 30 100.0 36 .............................. TCACAAACGTATAACACAGGCACGACATCGCCTTGT 33671 30 100.0 38 .............................. ACATTCTCTATTTCATCGCTTCGGGTCTGGCGTCTCTG 33603 30 100.0 36 .............................. TGAGCGTTTTGCCTTTATGCTTCCCGAACGTCAATT 33537 30 100.0 38 .............................. ACATTCTCTATTTCATCGCTTCGGGTCTGGCGTCTCTG 33469 30 100.0 36 .............................. TGAGCGTTTTGCCTTTATGCTTCCCGAACGTCAATT 33403 30 100.0 36 .............................. TTCGTCAAGCTCGTCGATGTCTACTCCGCCGAATGC 33337 30 100.0 38 .............................. TACCGTCTGATAACGATGTTGAGGAAACAGTGATAAAA 33269 30 100.0 35 .............................. AACAACAGAAAAAATGGAACTATGCCGAGGGGATC 33204 30 100.0 38 .............................. GCGATAGAGTCCAACATATAGCCGGCATGTCCTACTAT 33136 30 100.0 37 .............................. CGTCGTGGGCAACGTCGATGCAAGCGATCGGGAACCA 33069 30 100.0 35 .............................. AAGGGAATTGAAGCCTCATCGAAAATAAGGAGAGC 33004 30 100.0 35 .............................. CATTGTGCTAGAGCTAGCCGCTCCATTGACCGCCC 32939 30 100.0 36 .............................. AAAAAAACATTGTAAAACAACAATAATAGCAATCAT 32873 30 100.0 35 .............................. TTAAAAAGGAGGGAACATATCAGCAAGTTATTGAG 32808 30 100.0 37 .............................. TCCTAGTCTTCCACTGCGATAATATTTAAATGAATAA 32741 30 100.0 36 .............................. ACAAGGAGGAACAAGTCTTCTTTCGGTTTCCCGTCC 32675 30 100.0 41 .............................. TCACAAGACTTGAAACCGTTTGACACCGACAACCTGACCGG 32604 30 100.0 38 .............................. TAGTAAAGCCCAACACCGCACCGACAAAAGTAGACACA 32536 30 90.0 0 ....................A...C.G... | ========== ====== ====== ====== ============================== ========================================= ================== 40 30 99.8 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : CGCCAACCCATCGGTTCACTTGCCTCCCGAGCGGCTCGCCAAACTCGCCTCCGTAGCGTCAGCGCCGCTGCAGCCAGTGAAAGAAGCGATGGCGAAAACCGAAAAAGCGGGATACCAAGAGGCGATCATCAGCCGACTGCTTGGAGACATAAAAAGTTAGCACTCGCCCTTGTTCATGCAAGTATTGGTTATTTATATTCGTCTTGCCCGCGATGGATGGGCGGGCGGCGCCCGGGTCTTATTTACCGCATGCCGAGCGTTTGCCCTCGCTTAGGCAAACAGCAATCGGCAAACAAGGCAAGCCACAAATGCTAAGAAGCAGTCTTTGCTTGTCGTCGACCTCCAATCACGCAAAAACCCCAGGGGGTCGACGACATTGGTTTTGATCGCCTGATCCCTACAGCCATCAAGGATAGATTTGATTGACAGAATCTTCGAAACGTGTTATGCTGAAGTTGCCGCTGCAGGAGAAAGCTTGTTATGGCAGCGGTTTTTGGGGG # Right flank : GTCAGCGCACTATTTTGGCGGAAAGGTCCGTATTCCTCCGCTTTCTATCTGTCCTATCTTCCTCGAAAAATTTTGACCCACACTGGCTAGTTCAGCCCATTTTTCATACGAAGTTTTCTAGGAGGTTGGTGATTTAATCCTAGATACGGCTTTGCAATGTCACTTCTCAATTAGAAAAACCTTGTTGCATCGATCCTGCTTTTCGCCCATTCCCCCAATTGAGTAAGGGAATCAGCCGTTTTTTACCGCTCTCCTAGGGAGCCGGTGATTTACTCACGCAACCGCTTCTCAGAATCATTTCTCAAATAGAAAAACTAGTTGCATCAGCTTCTATGTTCACGCGCTCCGTCATCGATCAAGGCAAACAGCGGTTTTTCACCAGCCTCCTAGGAGACCGGTGATTTAAGGGAGCAAGCCGCTGATCAAGCCCGTTTCTCAAATAGAAAAACCTTGTCGCATCAGGATCATCTTTCAAACGATCCCTCATTGCTCAAAAGAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 2025385-2027733 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQMN01000001.1 Geobacillus subterraneus PSS2 N671DRAFT_scf7180000000004_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2025385 30 100.0 35 .............................. ACATCCGAGCCTACCCGTTTTGGGTAGGCTCTTTT 2025450 30 100.0 35 .............................. GCAAGCACGACAGTTGAACTTTTCGGCGACTCTGG 2025515 30 100.0 38 .............................. GCGGGCAGGATTTGTTGCCAAACAAGGTTTTAGCTCTG 2025583 30 100.0 40 .............................. GTTGAGGTGATGAAGTTGTGACGCCGGACTATTGGCGCGG 2025653 30 100.0 37 .............................. TCTATATCAATCTGCAATTCTTGTGCTCTTCTCACTT 2025720 30 100.0 34 .............................. TAAAGCGTCTGGAACCCGTTTTTTCGCGCTTTGA 2025784 30 100.0 36 .............................. GACTCATGCTGGACCTGATAGGGAGAGGGAAGCCCG 2025850 30 100.0 36 .............................. CTCACCTATTTCAATACTCTTATTGATATCATTTAA 2025916 30 100.0 36 .............................. TAACGGGAGTGGTCCGGTTGGTAAAGTATAAACAGA 2025982 30 100.0 36 .............................. TCACAAAACCGTCAACAACACTCGACGTCAAGAAAA 2026048 30 100.0 40 .............................. CAAACATCACGGACGATTTCATTGACCGGCGATGCAACCG 2026118 30 100.0 36 .............................. AAATGGAGAACTTCGTCGTTTCGGAAAACGTACATT 2026184 30 100.0 36 .............................. TCAAGTCGATCTTTTTAGACAAGTCCACGCCGATAT 2026250 30 100.0 37 .............................. CAGTGCGTCGCCAAAGAGTTGTTCCTCCTCGCTCTTT 2026317 30 100.0 35 .............................. TAAATATCTTGAAGGGATGCTATCCCTCCTAATTC 2026382 30 100.0 40 .............................. ATGAGTCAGAAGTGATCGCCAACTGCCAGGCGTCGGTTGG 2026452 30 100.0 35 .............................. AATATACACCATCATATTAGAAAGGAGTGATCACC 2026517 30 100.0 34 .............................. AAGAGTTTGATCCCAATCATGATGCCAGCAACCG 2026581 30 100.0 35 .............................. GCTCCCCACGGTTGTTTTCCGTGGGGCTGAAATTC 2026646 30 100.0 35 .............................. CCTTTCATTTTGATCTTGTCATGATCACGAAACTC 2026711 30 100.0 36 .............................. ACACAACTTTCATTTTCTTTCCCTCCATTCTTTTTT 2026777 30 100.0 36 .............................. TAGATTTTCTGAACCACTTACCCATTCTAAATTAGA 2026843 30 100.0 35 .............................. CGATTGGTACGTTTCACAAGGCGTGCCACTTTCAG 2026908 30 100.0 36 .............................. CGCCGCGCGACAGGCCCTAACTGTCCCGGCATAGAT 2026974 30 100.0 39 .............................. AAAGCTCAGACAACTTACCTGAATTAGACTGCTCAATTT 2027043 30 100.0 36 .............................. TCCGGTTCGGCCGGAAAATTCGCTGGGTTCTCACCA 2027109 30 100.0 35 .............................. TAATGAACATCGCCGATATTTGCTGATTTAATCTT 2027174 30 100.0 37 .............................. AGCGAATGGAAAGCGAAGGAGGTTCAATAATGGCAGG 2027241 30 100.0 35 .............................. CTCAGATGTTTATTAGACAGCCCTCCCGCCCCACA 2027306 30 100.0 36 .............................. TCGAAACATTCAACAACCTAAACGACATCAATCTCA 2027372 30 100.0 37 .............................. GTGATCCACCGGGAACAATGGTGCGCGTATGAATATT 2027439 30 100.0 36 .............................. ACACATACGCCTTGGCCACTGTTTTCTTCTCCATGC 2027505 30 100.0 38 .............................. GTCCGTATTCGGTTACTTCTTGCAATTTTTTTCTCCAA 2027573 30 96.7 35 ................C............. TTGGAAAATTCATGCGTTTGCACGCGCAAGGCATC 2027638 30 90.0 35 A................T.....A...... AATTCCTCCATGATCGTTGATCATCTTTTTCTACG A [2027659] 2027704 30 76.7 0 .GA.....T...T.G.........G....T | ========== ====== ====== ====== ============================== ======================================== ================== 36 30 99.0 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : CTTTCCGATGATATCGTCCGCGTCGCCCGTTCACCGATCCGCAAGCTCGGGCCGAACGACCGGCTCATCGCTCCGGCTGTGCAATATTACACTTTATTCGACAGCGTCCCGTCCGGGCTTGTCAAAGGCATCGCCGCGCTCTTGCGGTTTGATGAGCCTAGCGATGCCGAAGCTGCTGCTCTCCAGCAAACGATTGAACAAAGCGGTGTCGAAGGCGCGCTTCGGCAATACGCGGGACTGGAGCATGACCATCCGCTCGTCGTGGCGGTGAAGGAAGAATATGCTCAAATGAAACAAATGGATTTGCGTTAAACTCGGAGATCTCTTATATTCTGTCGTCGACCTCCAATCGTGCAAAAACCCCCGGGGGTCGACGACAACCGTTGAAAGCGCCCCACCTTCCAGCTACCGAAGGAAAAAGAAATTGACACAATTTTTGAAACATGATATTCTGAAAACAGCTGCCAACGGAAACACCTGATTTCACGGGCTTTGTTTGG # Right flank : TAAAGAAAACGTGGAGTGGGCGACTGGTTTTTCAAAGAGCTGCTGTCCACATTTTTCGAAGAGGTTTTGCGCCTGCTCATCCGTCTTGAGCTCGATGTTGATAAAAAACAACAGATTCGCTCGATTGGTGAGAAATTACAAGAAACAAAATAATGACGTTGCAAGGTTTTGCAGTTTGAGAAACAATGTTGGAGAGCAGCATTTCCTGTTAAATTACCTGCCTCTAGGAGGCCGGAGATTTAAGGGTGTATACGGATTTGCAGTGTCATTTCTCAATTAGAAAAACCTTGTTGGATCGGGCCTGTTTTTCAATCATTCTCCCATTGATGAAGGGGATCAGCGGTTTTTCACCGGCCTCCTAGAAGATCGTGATTTCGTACAAAATCTTGCTATTTCATCTGTTTTTCAATTAGAGAAGCTTTGCGAAATCAGCTTTTTTGGGTGAAATGCCGCTGATTTGCTCGTGGCAGTCGCTTTGGGGTGCCCCAAGGCGACCGGGA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 6 3620808-3618405 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQMN01000001.1 Geobacillus subterraneus PSS2 N671DRAFT_scf7180000000004_quiver.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3620807 30 100.0 37 .............................. ATTCCATTCCAGATGGATGATGCCAGCAATTTAATGC 3620740 30 100.0 37 .............................. CTTCAGAGCCGAATACACATATCCCATCTCCCATGTC 3620673 30 100.0 35 .............................. ATTTTCGCGCATTTCTTCACACAATCTACGAACCT 3620608 30 100.0 35 .............................. CTTAACCCCTCACGCATAAGCGCAAGAGGCGACCG 3620543 30 100.0 35 .............................. GTTTAGACGTGTTATGATTGTATCGTGGGATATGT 3620478 30 100.0 37 .............................. GAGTTTGATGTACAAATCAAAGACAAGTACGGAAGAT 3620411 30 100.0 36 .............................. TAAAAAACCCGATACCAATATCGTCTTTCACCAGCA 3620345 30 100.0 39 .............................. ATTTTCCGCTGCCGCTTTCCCCAGCAATCAGCAAATGCG 3620276 30 100.0 34 .............................. AAACTCGACCCTTCTAACACAACCTTGCTGGCGC 3620212 30 100.0 34 .............................. CGACCTCCTTGGCTGGACAAAGGAGCGGTTCAAC 3620148 30 100.0 34 .............................. TTCCTCCTCAAAACAAAAAAGACGGGATTTCCCG 3620084 30 100.0 36 .............................. CACGACATAGACAACCCCGTCTTGTGCGTCCGGCAA 3620018 30 100.0 36 .............................. ATCAGTTTCATTGCCGATCCCCCTGCCTACTTTTCT 3619952 30 100.0 38 .............................. CCTTTTTCATAAATAGAATCCATTAAAGTTTTATCTGT 3619884 30 100.0 36 .............................. GACGCTCACGCGGCTGGATTTGAAGAAGTTCAACAA 3619818 30 100.0 37 .............................. AACAGATTCAACAAGCGGGCGGCAAAGTGAAAAAAGG 3619751 30 100.0 35 .............................. CTGTTACATATTGCACATTACTTCCTACAGATTGC 3619686 30 100.0 35 .............................. TTGGAAAACGGGACATTTCTTACGGTGGAACCGGA 3619621 30 100.0 35 .............................. CCAACATCGCATCGAACATTGGCGCTTTTCCTGTC 3619556 30 100.0 34 .............................. ATAACCAAACATCACCTTTTCCTAATTTAAGACC 3619492 30 100.0 37 .............................. TGCCTCGATTGCGCGGCCGCATTGGACGCGGAAAAGG 3619425 30 100.0 36 .............................. CTGCACCATGATATTGAGCCTGTAATAGAAAATGAA 3619359 30 100.0 38 .............................. TCCCAAGCTCTTTTAAGTCTTTAGCAGTCTGTAAAAAT 3619291 30 100.0 36 .............................. TTGTCCTTCCCTGCCTTTATATCCCTCTCATACTCA 3619225 30 100.0 35 .............................. CGCGCTTTTGTCACCATTTTGGTGACTACGGGGTA 3619160 30 100.0 35 .............................. GCGGAAGAGTTGTGGGAAGAATATGTCGGATGGGG 3619095 30 100.0 37 .............................. TCGTCATCAACAGTACAGCAGAGTGGACAAGCTCGGA 3619028 30 100.0 35 .............................. ATTGCATACATTTTTCTAGTTTGTCTATATGCTCT 3618963 30 100.0 38 .............................. ATTCCGAAGAGAACATCGGTTTCTCTTGACACTTATGA 3618895 30 100.0 36 .............................. TCTCGCATGTTTGGTCAAAACCCGCGGCCGGCCGAG 3618829 30 100.0 38 .............................. AGTACTGTCAATATTATTTTTGGCATAGTGTGACTATC 3618761 30 100.0 36 .............................. CCCTACTATCATCAGAGCCAAAACGTACAGTTTTAC 3618695 30 100.0 35 .............................. TCCCAGCGATAAGGTCAGCTTGTAAGCGGGCTTTT 3618630 30 100.0 35 .............................. ATAAAACGACGGGTGCAACAGTTGATGCGGGTTCG 3618565 30 100.0 35 .............................. TAAATAATAGCCATTTTATATCTCCTTTCTTTTTT 3618500 30 100.0 36 .............................. ACTTCCAGTATGTCCCCGCAACAAACCGAAGACTTT 3618434 30 83.3 0 ...................A.A..G..G.T | ========== ====== ====== ====== ============================== ======================================= ================== 37 30 99.5 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GTGAACACTGCTACAAGTCTTGATGTCTGCGATCACTATTCAACGCATGTGGAGTGCGTGGCGAAATTGCAATGGCGGATGTAAACGCCAAACAACTGATCTCGATTGAACGTCATTGTCCAAAAGAAGTGTCCGCCTCAAGAAATGGACAGTCTGACCGCCCGCTGAGCAGGCGAGCGAGGAAGGCCGTTAGCCATCATCAACGAATTGGGTCAGTGGTGGTGAGAATGAATACTTCGGAACAAAGGGAAGCAAAAAAAGCGGATGATGCACGCGCCCTAATCGCTTGAAGCCTCTTCTCCAAGCGAAGCGCAAATGGCCGATCCATTCGCTTGTCGTCGACCTCCAATTGTGTAAAAACCTCAGGGGGTCGACGACATTGATTTTGATCGCTTGTTCCCTACAGCCATGACAAATGAACTGGATTGACAGAATCTTCGAAACGTGTTATTCTGAGGATGGCGTTTAAGGAAAAGCTTGATATGACAACAATTTTTGGG # Right flank : AACAGTTGTCCATAGCACGCCCCTGTGTTGCTTCGACTGATCTCCCCCATTCAACCGCTTATGTTTTAATGGAAGATGAGAAAAGTAGCAACCTTTCTCACCTATAAGTTGCGATATAAGAGGCATTTTTCCTCTTGAGAAGGGGAGGGGCTGCCCCAACCGCCCTCCCTCTCAAGAGGCCACGGTACGAAGTGAGATAGTAGGCTTTTCAATTTTTGTTGACAGTTTTCATTCATCAAAATTCCCAACGGCGCTATATGCCAAGTGCAGTTGGGGGCGTGCGAGAAAGTGAGAAACCTAAAAGGCCGGTGGCAAACCGCTGTGTCGCACACCAATGAGCGGCATCTTCATTTAAAAAAAGAAAGATGATTCTGCAAAGTTTCTCTAATTGAGAAGTAGGTTGGAACAGCAGCGTTTTACCCTAAATCACCAGCGTCTTAAACCTCATGCTTCTAGTTTTTTCGTTTCTTCGTTATAGACATGGACATTCAATTCTTTAG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 7 3705593-3705892 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQMN01000001.1 Geobacillus subterraneus PSS2 N671DRAFT_scf7180000000004_quiver.1_C, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3705593 36 100.0 30 .................................... TTTCTTGCCGGGGGAGTATAAATCATCATC 3705659 36 100.0 30 .................................... ATTCTTTTTCGTATTCTTCTTTTGTTATTT 3705725 36 100.0 30 .................................... GGCACTGGCAACCCAATCCGGCCAGCGTTC 3705791 36 100.0 30 .................................... TGATCCATTCGCAAAGTCGTAGCCATCATT 3705857 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 32 ATTATACCACAGCGATAATCTCAGGGGAACTATGAC # Left flank : TGGTCAGCAGCTCGATCCAAGACACATCCCTTGTCCCGAAAATTTTGGTCGTTGGCGGCCCGATGCGGGAAGAAAAAAGCCCTCATCGCCACGGCTCGACGAATGTTGGTGATCATCTTTTGCATGATCTCCCGCAAAGAGTCGTTCCGCCAACCACAACTTATCTAGTATAGCCAACAGGCAGCCAGATCATACGAGATGTCCGAAAATCGGGCACCTCTGCTTTCCTATTGCCTTCTTTGGCCATTTTCAGTATACCCGCACGGATCAGGAGCGTATACAGCACTCACCCAGTGGTGGGGATTTTCACGGAAAAGCAGTACGCAAAAATGCAACTGCTTCTCGGGGAACCAACAGCCCAAGAAAAGAAAATGACATCCACACAGCTGACACTTTTTTAAAAAACGGAAATGGTTCCCCCTATTGCATAGACACATTCGTATTTTTTTAAAAGCAAAAAAGCCTGCGATCCTTGAGATTGCAGGCTTTTTTGGATACGT # Right flank : CAAGAGCGGAATTTATCGCCTCCATCCAGACGTAAAAATCACAACTCACTGATGCGATTTTCACCCAACAAAAAGGCGGTGGATGACCGCCTTCTTCTCTATTCTCAATATTCATTCAACAGGAAACACTAGGGTGAGATCGATCACCCTTTTCCTCTTACTCGCTCAACAAGCTTCGAACCTCTTCTTCAGAAAGATCCACCAACTGGGCAATCTCGGCGGCCGTCATCCCTTTTTGTGCCATCGTCTGAATAAGCCGCTTCATTCCCTGTTTCATGCCTTGTTCCATTCCTTGTTTCATCCCTTGCGCAAGGCCGCGTTTTACCCCTTCTTCCAGCCCTTCTTTTTTCCCTTTTTGCTCGTAGGAGATGATCAGCTCCAGCACTTTCTCTCGTTCTTTCGTTTCCATCGCCTTCACCTCGCTTTGCAGCTGTTGTTCCTCTTCCTCCGTCAACTTCACGTACGTCTCAAAAAACCCAAGCAGCAGCCGCTGCCTCGCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATACCACAGCGATAATCTCAGGGGAACTATGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 8 3708501-3707026 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQMN01000001.1 Geobacillus subterraneus PSS2 N671DRAFT_scf7180000000004_quiver.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3708500 30 100.0 35 .............................. GCTGCCCCTACAAGCGGAACATATCAAGTAGGAGA 3708435 30 100.0 35 .............................. TCCAGCGACAGCAACTCGGCGAGCCCATTTTGCTG 3708370 30 100.0 34 .............................. GCCGAAATGTACAAGTTGTCGTTCCAGGATCGCG 3708306 30 100.0 38 .............................. TACTTCAGCATCGCCTTATCCATCGCATCTTGGTTGAC 3708238 30 100.0 35 .............................. CAGCATTGGCTATAACCATTCGGATCCTTATTTTC 3708173 30 100.0 34 .............................. GACGATACGTCAACGATACGTACCACGTTAAGTG 3708109 30 96.7 35 .G............................ ATTTTCGATAGAATACAATAAACATAGGGGGGTGA 3708044 30 100.0 38 .............................. TATATCTAACGATAAGGGAAAGAAATATTACTATTACA 3707976 30 90.0 33 ........................GA..C. GTGCACAAAAACGCGTAAGGGGTGACGGGACAT 3707913 30 100.0 35 .............................. GGTCATGCCAGCATAAAAATGACCGCTGACACGTA 3707848 30 100.0 36 .............................. TCAGTTGGCTGTTCTTGCGACTCGGGTGGCTTCCTG 3707782 30 100.0 36 .............................. GATGATGTTGTCCATAAGAAAAACAGATCGTAACTT 3707716 30 100.0 37 .............................. CTTTGTCCGTTTGCGAGATCAGTATGAAGTCATATCC 3707649 30 93.3 34 ............................CA AGGTGCCGCTTGTATCAAATATGAGGGACACCTA 3707585 30 93.3 34 ............................CG ATGTACAAATGAAAACAAGCACAGGGACATTAAC 3707521 30 100.0 37 .............................. TTTTTCCTAATCCTCCTAAAGCCGCCGGTTTCTCTTC 3707454 30 100.0 38 .............................. TGCAATGATTGGTAAAGACGCTAGAGAGATGGAGGAAT 3707386 30 100.0 39 .............................. AATAATTCATAAAGGAGTGTATCAAATGAAACGCATTTA 3707317 30 100.0 35 .............................. TAGATAGTCCGACATATTTGTTCGATGACGCTATC 3707252 30 100.0 35 .............................. CTCGGTTCGCCTTGCGTATTCGGTTGCCCTCCATC 3707187 30 100.0 35 .............................. TCCTTTGCTTGATATGTCCCGGCTTCTGCGTATTG 3707122 30 100.0 37 .............................. AATACATCGCCGTGCGGGCGCGGAAGGTGGCGTAGTC 3707055 30 70.0 0 ..........C..T.....C.A...TTTCA | ========== ====== ====== ====== ============================== ======================================= ================== 23 30 97.5 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GTATGAAACGATCGATGGCAAAAAGAAAACGCATTTTTTCGGGCCGGACGACGACGTCTTTCCCCACCTCGTGGAGCTGAATTTCCGCCATAAATACGAAGCGTACTATGGCGTCGAGCCAGAAGAGCGATTGATGATCGAGCCTGTCCATGTCCACCACCGTCATCGAGTGGTAACAAGATTCAAAGATATGTATATTACCGGCTGGTTAGGCCATTATCGTCTTTCCTCTTCTCCCGAACAACTGACGTTTCTATACCACGTTGGCCTAGGCAGCCGCAATTCCCAAGGATTCGGCATGTTTCGGTTAATCAGCGAGTGAGCCATTCTAATTGTCGTCGACCTCCAATCGTGCAAAAAACCTAGGGGGTCGACGACATTGGTTTTGATCGCTTGATCCCTACAGCCATCATGGTTGAACTTGATTGACAGAATCTTCGAAACGTGTTATTCTGATAATGACGTTGAAGAGAAAAGGTTGATATGACAACACTTTTTGG # Right flank : CTGTGAGCAGGATGTTGCCTTGGGGACGGCGAATAGAAAAAGAGAGACCGTCAAGTTGAGGTGATTGAATGGCGATTGACCATGATCGGCTGTTCAAAGAGCTGATCCGCACGTTTTTCGAAGAGTTTCTGCTCCTCTTTTTCCCCGATATGCACGAGCATATCGATTTCCACCATCTGTCCTTTTTATCCGAAGAGCTGTTTACCGATGTGACGGCCGGTGAAAAGTACCGCGTTGATTTGCTGGTCGAGACGAAGCTGAAAGGCGAAGACGGGCTGATCATCGTGCACGTGGAAACGCAAGGGTATGTCCAGCCGTCGTTTGCCGAGCGCATGTTCCTCTATTTCAGCCGCTTGTATGAAAGTTACCGGACCCGCATCGTTCCGATCGCCGTCTTCCACTATGATTCCCTCCGCGAGGAACCGTCTGTGTTTTCGATGGAATTTCCGTTTGGGGAAGTGCTGCAGTTTCGCTTTTTTCCGGTGGCGCTGCGGAAGAAG # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //