Array 1 1724348-1723899 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXQA010000001.1 Enterobacter roggenkampii strain RHBSTW-00367 RHBSTW-00367_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1724347 28 100.0 32 ............................ GCTAATTGGCTCCTTGGCGGGCGGCAGGGTAT 1724287 28 100.0 32 ............................ CGTCAGCTTTCCGGCGGAGAGCTGCGCCGTCT 1724227 28 100.0 32 ............................ GTGTTCTTGAAGTTGATGAAAATGGCGCAGTT 1724167 28 100.0 32 ............................ CAGCGGTTTTCGCATAATAACCGCAGGGTCGA 1724107 28 96.4 33 ....A....................... GCATGAATCGCACTTCCAATGTGCGCCGATTTA 1724046 28 92.9 32 ....A.................G..... AGTATCCACCGGCGACTTTACTGACGGCATCG 1723986 28 85.7 31 ....A......C...C......C..... ATAGAAAATAAGGCCTAACAGTCGTCGCACC C [1723961] 1723926 28 67.9 0 ....A...T..A....AT...CCT...G | ========== ====== ====== ====== ============================ ================================= ================== 8 28 92.9 32 GTGCTCTGCCGTACAGGCAGCTTAGAAA # Left flank : AAACGGGCCACGCGTTCGCTCTCGTCGGGCGTTAACGTCCGTCCCGCGCTTTTGCGGCGGGCCACGTTACGTTCGTTGATACCCGTGACACGCAAAATGTCCGCTTTCGACATGGACGTCCACTCGTGGATGTTGTCGAGCACACTGACGGGTAATCCCTGATTGAGAAATTCAATCAACCGCATACCTCGGTTGGCGGGTAAACCGGCGTAACGCCAAAGTGCGTTATCAGCAGGTTTCTGTGCGGGGATCCATGTTCTCATGTAACCTCCTGAGTGATGTCATTTGTCATGGTTAAGTATAGCCATTTGTCAGGGTGGGTGGAATGGGTGTTTTTGTGAGGGGGATTGATGCGAAGAAGGTGTTTTGACCCTAATTTTTAGCGTTTGTGTAATTTATTGATTTTAAATGAGTATTCTTGGTGGGTAAAAAAGAGGGTCAGAGAAGGTTTTTTAGCTTTTTTTGTATGCAAATCAGAAGGGTGTGGAGATATTATTTCA # Right flank : CTGGAACGAACGGCTAAATAATTGTTCAAATAATCGACTGCGACACACAAAAATAAGGCCGGGAATATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGTAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGTTTGAAACGCAGCAAAACAGTTTCGGCGCATTGCCCAAGCGTCACGGTACAACCGAACGGAAAGCGCATTCGTAAAGGGGATACAACA # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1735013-1733901 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXQA010000001.1 Enterobacter roggenkampii strain RHBSTW-00367 RHBSTW-00367_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1735012 28 100.0 32 ............................ GACCGCATGTCGTAAAACAGTTTCAGTGTTTC 1734952 28 100.0 32 ............................ AAACGATAGCGTCACATGTTTTTTGCGTCAAC 1734892 28 100.0 32 ............................ TGGACGCGTCGAATATCAGAGAACGGCAGGAC 1734832 28 100.0 32 ............................ TGCAAAGCCGGGTTTTAACGAGCTATCAGTGT 1734772 28 100.0 34 ............................ AGTCCGCTCCCTGAAATGTTCGGCGCGTCGCTGT 1734710 28 100.0 32 ............................ ATAATATTTATTGATATACTCTTTTAATTCCA 1734650 28 100.0 32 ............................ TTTACGCGCTGATAAATCTCCACCTGACGACC 1734590 28 100.0 32 ............................ TGCAGGGATTGCCTTCAGTGTCGCCAGCGCAA 1734530 28 100.0 33 ............................ ATCAGCAATGGATGGGAACGCATCGAAGCAATC 1734469 28 100.0 32 ............................ CCTCTCGCGTTCGTGAGAAGTTCGAACATGAT 1734409 28 100.0 32 ............................ TTGTGCCAGTTACGGAAAGCGGAGCAGAACAG 1734349 28 100.0 32 ............................ ACCAGCAGGCAGGCATCACCGGCGTGCCAAAA 1734289 28 100.0 32 ............................ GCAGCCAATACCAGCGGTAAAACGCTGCTCGG 1734229 28 100.0 32 ............................ TCTGCCGCGTCTGTTTTCCTCGCCTCACGCGG 1734169 28 100.0 32 ............................ GTCGGCGGCAGCATAGCTGACAGTAGTTTCCG 1734109 28 96.4 32 A........................... TAATTATGGCGCTATTACGCTGAGTCATAACG 1734049 28 100.0 33 ............................ CGCGCGGACGGCTCCACGGTAAAACACGTATCA 1733988 28 100.0 32 ............................ GGGTGATTACATCTGCGGTGAATGCTGCGTTG 1733928 28 92.9 0 ............G..........T.... | ========== ====== ====== ====== ============================ ================================== ================== 19 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCCCGCAAACGCAGCCCGTTTGCCGCTGTCTCGGAGCCTGGCTGGAAGAGGTGAAATCCGGCCTCACAGAATCAATGCGTGATTTTCAAGTGGTGGAATTTGAGGACGAAGCGGAAAAACCGCGACAAAAAGAGTGGTTGCTGGAAGATACAGAAACGAAATGCGACTACTGCCGGGCGTTAAACCATGTGCTGCTGGTGTCGCATTTTGACTGCGATATGTTGCCGCACCTGACGGGGTTGCTGCATGACATTACGCATTCAATGGCCGCGGATGTCGTTGCACCTCAAAGTGCAGAAACGGTAATTCATATTATTTCCTGAGTGCTATCTGAGGCGTCGGGGGTGTTCCTCTGACGCCATTGGTTTAAACCCTTTTTTCTGATGCTTACGTAACCTTTTGATTTATATAATGCGAATTTACGAACCAGAAAAAAGGGTTTTATGCGGGAAAGTTGATTATTTTCTTTTTTAACAATAAGATGGCGCAGTTTCCTTTCA # Right flank : GCCCCTCTGGGCTTTAATGCCGTGGAAATGGCGTTACTGTCCCACAGACAGTACAAGTAAACCCATCCCTCACAAACATTCACCTCGTCTATTTAAAAACAAAATACCATCATCCACACGCTTTCCCTTTTCAGATTAAATAAAAATCCCATTCAGGGGATAATTATATTTTCGTGGATATATTATTAGTGAAAATAATCCTTTTAAAAAAGGATGTATTTTTTGTTTAGTCATCACCGAAATTTCCATTCATTTGATATCTATCAAATTTGCATTTGTCTTATGTCCGATAACATACCCGCATTCAACACCTTGAAATTAAAGCCGTTGCCATGCCTGCAAATAGCATCACTCCTACCGATTTAAAAACCATCCTGCATTCAAAGCGCGCCAATATTTATTACCTGGAAAAATGTCGCATCCAGGTGAATGGCGGGCGCGTTGAATATGTCACCCAGGAAGGCAAGGAGTCGTTTTACTGGAATATTCCCATCGCGAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //