Array 1 276747-277494 **** Predicted by CRISPRDetect 2.4 *** >NZ_SITN01000044.1 Hafnia paralvei strain PCM_1218 807, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 276747 28 100.0 32 ............................ ACAAAATTTTTACATTCCTATTTTACTAGATA 276807 28 100.0 32 ............................ CTGCGCGCCGGCTTTTTCTGCATCACGACCCA 276867 28 100.0 32 ............................ AGAACAGGAATTATCGGCTACCCGTTCGACAT 276927 28 100.0 32 ............................ TTATCCTTCTTGCTGCGAGGTTCGGTAAGAAT 276987 28 100.0 32 ............................ ACGTCAAAAACTATCAAACGCTGGGTACAAGA 277047 28 100.0 32 ............................ AGTGCAAAAACAGCAGATCGATACAATCAACA 277107 28 100.0 32 ............................ TGAGCGAGCGCGCCGAGTTGTTGCAGGGTGGC 277167 28 100.0 32 ............................ TGCCAGAAGGGGGCGACCTGAACAACGGTCGG 277227 28 96.4 32 ...C........................ ATATGTCTCGTTCAACCACCCTTTATTGCCTT 277287 28 96.4 32 ...C........................ TTGGAACCGTGTCAATAACTGCATTTTGAACA 277347 28 96.4 32 ...C........................ ATTGGCCGCCGGACGACGTGACTGTCCAAAGT 277407 28 96.4 32 ...C........................ GCCTTTTGTGGTTCGTTTAATGCAATTGGTAT 277467 28 92.9 0 ...C.......C................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.3 32 GTTTACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTTGGTGCAGTGGTAGGAACGTTGTTGGCACTGGCTTCGGCGCGCAGTGAATGGCCGATGGTCAGCTCAATGTTCTTATGCATTTTCGCCGCAATGATGTTGTTCCTGTACGCTTCTAGACCTTCCAAGAGTAGCCGCGTAGAACCTGTCTGAGCTTGACTGCTCGTCTCCCCGTCGCGGAAAGAGGCGGGGAGGCCGACGACTGGGCGTTCGGAGATATCTGCGGCAACCGTGTGTTGACCATATCACACAGCTTTAGCATCAGATACGCAGATGCTTTCAGCCACGCACTCACCTGATCCAAACTCTTCTACGGGATTTGAACCCCATTCTCCAGTGATTCACTTAGAAATGAAAATCCGTGGCGCAAAACCCTTTTTTCCTACCCACACGTAACGTATTGATTTTATGTGTGGTGCCGAGCCAGAAATAAAAAAGGTCTTTTAACCAAAAATGAGTTACCGCTCTGATTAGTCAAACCTTTTTGCTATTATTCTACA # Right flank : AATATAATCGTGCTAACTATTTTCAGTTTTTGGCATGGATTTTCATTTTTTTAACAGAACATCTAACTTAACTAGGTAAAATCCATTGTGAAAAGACAAAGCATTAAAGTTATTTAGCATTCGTTGTGCTTTTTATTTTCCATCAAAACAATTAATTAGCTAATTTCATTGATCATGGTTCAGTGATTTATTGTATTTTGTATGTAAATTGAAAAACACGACAAAGTAATTAAAATGAAACGAAAATGGTTGTGATAATAAAGATAAAAGTATACATATAACCCCAATAACCGATCTCCCTCCATCGTGGTACTTCTAGAGTGAAAAAATGGAGTAGCGCCAACAAGATCGTGCTTTAGGCTGTTTATTCTTCGGTGTTACCGAAATGTAATAAACAAACTCATAACAAAATGACGATTAAGTCATCAAATAGCCGGAATAGTGCGAACTTAGGTTTACGATGTGAGTTTTTTGTGAAAAAATTGTAGTTAGTTTTTAAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTTACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 287024-288311 **** Predicted by CRISPRDetect 2.4 *** >NZ_SITN01000044.1 Hafnia paralvei strain PCM_1218 807, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 287024 28 100.0 32 ............................ GCGTTTTCGTGCTGCTCCCACGCAGCCTGAGA 287084 28 100.0 32 ............................ AATAAACGCATGACATTGCTAACCAAAGAGGG 287144 28 100.0 32 ............................ GTGTTAGCGAGTGGCGATAAAAACGCCGGCTA 287204 28 100.0 32 ............................ AGTTGTTTGCTGATAGCTCAACTACGGCGCTT 287264 28 100.0 32 ............................ TAGCAAGCCACGCCCGAGCAGAGCGCCAATGA 287324 28 100.0 32 ............................ GGGGACTCCGATTGCACTTGTAACACCTTCAG 287384 28 100.0 33 ............................ TCCGCAAGTTCCACCTGCTATGGCTGCATTGAT 287445 28 100.0 32 ............................ TAACGAACCTTTCGGCTTGATATCTATCAATT 287505 28 100.0 32 ............................ AAGACCACCGCCAAGCAATGCCCCGATAAGAA 287565 28 100.0 32 ............................ TGTATATCGACCAGCATTAATAGCACCAATTC 287625 28 100.0 32 ............................ AGACGGCAAATCAACAATAGAGTTACCTTTCT 287685 28 100.0 32 ............................ TATACAATTTAGAAGAAGGATTTGCTCAGGCA 287745 28 100.0 32 ............................ ATAGCTGAGCAACCAAACAGCGAGAAAGAGCT 287805 28 100.0 32 ............................ AATGTTGTATGAGCCAAACTTTGTGCCGGCAA 287865 28 100.0 32 ............................ AACCAGACCCCGAAAGGGAGCTCGGTGCTGTC 287925 28 100.0 32 ............................ AGTATGTGAACAACTGACTGCTGATGGATTCC 287985 28 100.0 32 ............................ AAACCACAAACGCGGCACACCATGCAGCTGCA 288045 28 100.0 32 ............................ GAAAACCGAAACCGAACAGCGAAAAAAACCGA 288105 28 100.0 32 ............................ CATGAGTGTGGGTAGCCGTTGCGCGCTAATTT 288165 28 100.0 32 ............................ TCACAATTTACAAGAAAATTGCTCAATAGATC 288225 28 96.4 32 ............A............... CAACGGAAACCCGCCGCTATCGGGAGAGAGTA 288285 27 89.3 0 ...A........A...........-... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.4 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : TACACAATGCAGCGACATTCAACGGATCCCTGAGAATGTGATGCATTGCACCGTGAGTCGAGTGCAGGTGAAAAGCAGTGCGGAACGACTGCGGCGCAGATCGGTTAAAAAAGGCTGGCTCACCGAGGAACAGGCGCGGGAGCAAATTCTGGATGCCAACGAGCAACGCACTTCACTGCCCTTTATTTCGTTGAAAAGCCTATCCACTGGACAAATGTTTCCGCTGTTTATCCGCCAAGGGAAAGCGCAGTCTCATCCTCAGACGGGAACCTTCAGTAGCTACGGCTTAAGCTCAACCGCCACTGTGCCGTGGTTTTAGTTTTGTTGGTTTTCAGCGCCCGCCTGAAACTAGACGGGCGCTTCAGCTAAAACCCTTTTTTATTGCTTGCTCGTAACTTATTGATTTTCAATAATCATGGATGATGCAAAATAAAAAGGGTTTTATAAAGAGTAACAGGCTATTGTTTTGATTTATAAAATCTTTCTCCAGTTATTCTACA # Right flank : ACGGGTTTGTCGTTTAGGCTACGAACTCACGGCCGTTCTTTTGCCGATTTAGCCTATCTCAGTCAGCAAAGGCTAATAGCTGGCGCGTGTAGTCTTGAGTTGGATTGGCAAAAACTTCAGCGCAGTTTCCGTGCTCAATCACTTTTCCGTTTCGCATCACCATCACCTGATGGCACAGTGACCGCACTACCTGCAAGTCATGGCTGATGAACAGGTAGCTGAGCTGGTGGCGTTGCTGAAGTGTTTTCAGCAGCGTTAAAATCTGTGCCTGCACGGAGCGATCGAGCGAAGAGGTCGGTTCGTCCAGTATCAATAACCGAGGTTCAAGAATTAATGCGCGGGCAATCGCAATACGCTGACGCTGACCGCCGGAGAACTCGGTGGGATAGCGATAACGAGTTTCTGGATCGAGCCCAACTTCGTTCATAGCGCTGATTACCCGCTCTTCCCGTTGCTGTTCGTTCAGCTTTTGGTGTACCTGCAAGCCCTCGGCGATGATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //