Array 1 5959-4856 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJHT01000052.1 Klebsiella pneumoniae strain EuSCAPE_RO102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================================================================================================================================== ================== 5958 28 96.6 32 .....-....................... TTCTCTCCGCCGGGCAGTGTGATGCCGGAGGG 5898 29 100.0 32 ............................. TAAATCAGCAAATCTTGTTGTCTACCGTGTCG 5837 29 93.1 93 ............TC............... AAGTTATTCATGTCGCCATTCACGTCGGCGGCGTATTTCCCCCGTATGCGGGGGTTATCGGAGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 5715 29 93.1 32 ............TG............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 5654 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 5594 29 89.7 32 .............A.T..........T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 5533 29 93.1 32 ............TC............... TTACGCATTGTGATCAGGATTCGCTTCAGACG 5472 29 93.1 32 .............A.....T......... AATGGTGACAGGCAGTGCACCGGCCTGGAGGA 5411 29 89.7 32 .....A......TA............... TCGCCCAGTCCAAAGGGGATGATGCAGGATTG 5350 29 100.0 32 ............................. GGCATGAGCGCGAACCACTGCGAGAGTGTGGT 5289 28 86.2 120 ..........A..A........-.....A CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGG 5141 28 65.5 165 ...C....A...-.G..A..T.GG.GG.. AATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCC 4948 28 62.1 36 ...-G..G..GA....T.AC..C.T..A. GCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGG 4884 29 65.5 0 ......GA..A..A..T.AACA.G..... | ========== ====== ====== ====== ============================= ===================================================================================================================================================================== ================== 14 29 87.2 54 GTATTCCCCCCGCTTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAGGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACTGGCGCAGAACTCCGCCATCGCATGAGTATTAAAAATGCGACTGATGAAGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCTGCCGAACCACGTTTTGGGGGGCATGCGAATCATAACTGCGGTCTGGTTGAGGCTCACTGGACAGTAACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTATTATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CTTCTCCGTCACATTCTTTCAGCTCAGCACCGAAATCACCGCAAACTTCACCTGCATACTGATTTACTTTTTCCAGATGTAACTCACCGAAAACTTTACGGCGGTACTTAGTCACAAAAACAATGTGAACATGTAATAAATAGGAGGAATACCGACTTCTGTATATTTCCTGCACCTGTTGACTCCGTGATGTACACATGGTTATTTATACAGGTTATCTCAATACACACTGAATGCAAAATGCTAATCCAGAAAGCGTATAAATACAGACTCAACCCGACAGATGCACAGGCGCAACGACTGCGTCAGATGTGCGGCTGCGCCCGTTTTGTCTGGAATTACGCCCTGGCAGAGACGCAGCGTATTCTTGAGGCCGGACAAAAACTCCCTTCCGCCTTTGAGCTGAATAAAATGCTGACAGGATGGAAGAAACTCCCTGAGCTGGCGTTTTTATCCGATGCCTACACCGACAACCTTCAGCAAAAACTGAAAGACCTGCA # Questionable array : NO Score: 2.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.36, 5:0, 6:0.25, 7:-1.94, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCTTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [35-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //