Array 1 65-229 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MOMD01000102.1 Frankia sp. CcI156 contig_102, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence      	Spacer_Sequence                                     	Insertion/Deletion
==========	======	======	======	=====================	====================================================	==================
        65	    21	 100.0	    52	.....................	TCCTCACACCAGGTGAGGCCACATGTGAGTCCGCGGGCAGCGCCGGGCGTCC	
       138	    21	 100.0	    50	.....................	TACTCCGGCACCGAGACCGCCGCGAACATCACAGGCAGCGCCGGGCGTCC  	
       209	    21	 100.0	     0	.....................	|                                                   	
==========	======	======	======	=====================	====================================================	==================
         3	    21	 100.0	    52	GCGCCCGGCGAGGTTCCCAAC	                                                    	       

# Left flank :   GGCTGCCGCTGCCGCGGGCCGCCGACGGCCGGATCGTGCTGGGTGTGGACGTCAGCCCGTGGCTG
# Right flank :  CCCCGTGGTGGCGGCATCTGCCGCGATCGCGGCGGCGGGCCGTCGGGGGTCCATTTCCCACCGAGGACGATGCGCAGAAGGCGCTGACGGCCTCGTTAGCGGAGCTTCACGGCGGCGACTGGCTGGAAGAGGCCTGACTCGAACCCACGACCGACGGATTATGAGATCATCGGCAGCCTGTTCGCCGGTCTCCATGGACGTCCGCCGGTCCTGATCACAGGTACACCCGGTCGCCCCGCCGCTTCTTGATGATCGACGCCACAATATGGACAATACACCCTTTGAAGCCATAATCGCACCGATCTGGTCGCGCAACGGTGCAGGTCGACCGGCGTACACCAGATCGTCGATCATAGCCAAAGAGGCATAAGTTATTCGCCAGCTAGGAAACTCAGGCTAGTCCAGAACATCCGCCGCGGCTACGACGAACTCGACGTCGAGGCCGATTCTCACCCGATACTGTCGCCTGTTCTCACCGAGCTCGCCCGCGCCATCTGACC

# Questionable array : NO	 Score: 4.30
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:-0.5, 7:-0.60, 8:0.4, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCGCCCGGCGAGGTTCCCAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [3,2] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [21.7-23.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.37,0   Confidence: MEDIUM] 

# Array family : NA
//


Array 1 155-4 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MOMD01000017.1 Frankia sp. CcI156 contig_16, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
       154	    29	  96.6	    32	............................T	GGTGGTCCGGCGCAGATCTGGCTGGCGGTAAC	
        93	    29	 100.0	    32	.............................	TCACCCGGCAGGGTGGGCCACAACCCGGCGCG	
        32	    29	  96.6	     0	............................A	|                               	
==========	======	======	======	=============================	================================	==================
         3	    29	  97.7	    32	GTCGTCCCCGCACGCGCGGGGATCTTCCG	                                	       

# Left flank :   GCCCGCATCATCCACGACATCAAAGACCTCCTCATCGAGGAAGGAACCCGAGATAACGACGAGGACGCACTCCACTTGTGGGACGAGCTCGACGGCCACGTCCCCGGCGGCGTCAACTGGGCCGCCGACCTCGCCGACCAGACCGACGACACCACCATCCTCGGTGTCACCGGACCCGACACCGACCAGCCACCCCCACCCTGGTGACCGTCATCGTCCTCATCGCCACCGCCGACGGCCTCCGCGGCCACCTCACCCGCTGGATGATCGAAATCTCGGCGGGCGTCTTCGTCGGCAACCCCAGCGCCCGCGTCCGCGACCGGCTCTGGACCCTGCTCTCCCAACGCGTCGGTGACGGCCAAGCCATCATGATCGAACCAGCCACGAACGAACAAGGCTGGGCCGCCCGCACCGCCGGCCGCAACCGCACCCAGCCCGTCGACTACGACGGACTGATACTGTTTGCCCGATCTCGCCGATAAACCCGCAGGTCAACAAGT
# Right flank :  AACG

# Questionable array : NO	 Score: 5.56
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGTCCCCGCACGCGCGGGGATCTTCCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,2] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCGTCCCCGCATGCGCGGGGATCCTCCG with 96% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.10,-12.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: R [3.3-46.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,5.14   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//