Array 1 125294-124350 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGJP01000001.1 Escherichia coli strain WCHEC050613C2G0 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125293 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 125232 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 125171 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 125110 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 125049 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 124988 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 124927 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 124866 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 124805 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 124744 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 124683 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 124622 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 124561 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 124500 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 124439 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 124378 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 152379-150843 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGJP01000001.1 Escherichia coli strain WCHEC050613C2G0 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 152378 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 152317 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 152256 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 152195 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 152134 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 152073 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 152012 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 151951 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 151890 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 151829 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 151768 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 151707 29 86.2 12 ...............C.A.C....G.... CAAACAGAGCCG G [151681] Deletion [151667] 151665 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 151604 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 151543 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 151482 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 151421 29 96.6 32 .........A................... TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 151360 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 151299 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 151238 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 151177 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 151116 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 151055 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 150993 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 150932 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 150871 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.9 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //