Array 1 251721-258754 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023057.1 Glaesserella sp. 15-184 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 251721 32 100.0 35 ................................ ACATCACCGCCGGATACCCAGATCCCATTTTGCGG 251788 32 100.0 36 ................................ CCATTTTTTACCACCGGTCAAAAAGGGGGGTGACTT 251856 32 100.0 34 ................................ TTCAAAAGACAAGCAACCTGCGGTGTAAGTGTTA 251922 32 100.0 35 ................................ GCCTGCCACGTCAAAACGCCTGCGGTTATGGCTAT 251989 32 100.0 36 ................................ TTATGTTTTTAAATTAAAATAGGAGAAAAAAAAATG 252057 32 100.0 34 ................................ ACCGCAGATAAAGCGTTGAAGTGGGTGGTGGGTA 252123 32 100.0 35 ................................ TGGATTGCTACGCCTTACGATATGGGCGATCCACC 252190 32 100.0 36 ................................ ACAGTGGGGTAATTTGTCGTAAACCTGATGGTGAAG 252258 32 100.0 34 ................................ CACGCCACCCAATTCTTTGAGCAGCAAATTGGTC 252324 32 100.0 34 ................................ GGGTAGGTCGCTTTCTTCAAAAGACAAGCAACCT 252390 32 100.0 36 ................................ TGCTAACGCCCTGCGGTTGTTAGACTAAAAAAGCCA 252458 32 100.0 36 ................................ ATAATGGTGTCCGTTCTTCTATTTTGACCGCTGAAA 252526 32 100.0 36 ................................ AAATAAAACTAGTATTAAACCTGAAGAAAAGAAATC 252594 32 100.0 35 ................................ TATAAGTGAGTTACTACCATGAAGGGCTTTTAGTA 252661 32 100.0 33 ................................ TATCGACTTTTCATTTCTAGAGTTAAATTCTCT 252726 32 100.0 35 ................................ ATCTTCTGAAGCATATTTCGGATCAGCTAATAATG 252793 32 100.0 35 ................................ AATTATGACTAGACAAAGATTGAAAATCATCCAAT 252860 32 100.0 35 ................................ TGTTGTCGTTCAGCCTCCATCGCATCATAAACCGT 252927 32 100.0 35 ................................ TGCAACTTATACATAGCTCTAGCCACGTTTTCAGA 252994 32 100.0 36 ................................ AGTATCGTCAGGAACACCAGGAGCACAGACCTCCGC 253062 32 100.0 36 ................................ AAGGTGATGAGCAATGCTATTTTGCTCAGACAGCTC 253130 32 100.0 36 ................................ TCCACCTCGGTTTCTGCATTTAGCATTTTATCCCAC 253198 32 100.0 35 ................................ TTTATAATGCAATCACTTTCTAGGAAGAACTTTGT 253265 32 100.0 36 ................................ AATGCGAATAGCGTCACGAGCCTTTGTTTTTGGCGG 253333 32 100.0 35 ................................ TAGGGAACACTAGGAAGAACTTTGTAACAATAACT 253400 32 100.0 35 ................................ TATTCCGAAGTCAAAGCTTTATTTGCTACTGATGA 253467 32 100.0 33 ................................ TATCTAGCCAATAGGCTATAAGGATCAATATAT 253532 32 100.0 36 ................................ CCGCTCGCTCGCCACGCCACGAAACCACGCAATCAC 253600 32 100.0 34 ................................ TAGGCGGTTTATCGTTGCTTGCATTGTTGCAGTA 253666 32 100.0 35 ................................ CCTACAATGTACTCACTTTCTAGGGAATACTAGGA 253733 32 100.0 35 ................................ TGTTTTTCGTACCAAGTGCGACAAAATCCACAAAA 253800 32 100.0 34 ................................ TTATAATGTGATCACTTTCTAGGGAACACTAGGA 253866 32 100.0 33 ................................ ACTGGGTAAAGCCGGTGCAAGCCGTGACCCATC 253931 32 100.0 35 ................................ ATTTTTATCAATGTTCGACGGTGTGAGGAATACAA 253998 32 100.0 35 ................................ TGAAAAAGGAAAGTATCCTTACACTTGGGCTATGT 254065 32 100.0 35 ................................ AAGGAAATTATACTCGTTAATTCGGCGACTAATCC 254132 32 100.0 34 ................................ CAACAATCTCAATCACTCGCTCCACGTCATCGAC 254198 32 100.0 35 ................................ AGATCTAAGATTATCTAGATCTTGCATTACATTAG 254265 32 100.0 35 ................................ TAGGGAACACTAGAAAGCAATCATTATCTAGTAAC 254332 32 100.0 36 ................................ AAAAGAAATAGTATCTGTTGTCTATGGTGATCAGGC 254400 32 100.0 36 ................................ AAAAGAAATAGTATCTGTTGTCTATGGTGATCAGGC 254468 32 100.0 34 ................................ ACCAATAATGTCCCACGTTCAAAGGCACTAACCT 254534 32 100.0 34 ................................ GTCTCTTTGAGTTAGTTTAATATCTCGTGGTGGC 254600 32 100.0 34 ................................ CACATTATTAACCACGATGGCATAAAAGTTGTAT 254666 32 100.0 36 ................................ CGTCATAAAACCCTGCAAGTTGTGTACCATCAACAG 254734 32 100.0 35 ................................ AATAAACACAGGTATTACGCTTACGAAGAATAACA 254801 32 100.0 34 ................................ ACTCAAACGGAAGTGCTTTTAACTGAAATGAATG 254867 32 100.0 36 ................................ TTTAATGAAGCTGATGACGCATTAACAAAAGCGTGG 254935 32 100.0 33 ................................ TGTACGCTGTGTGACAGGGTTATATACCTGAGC 255000 32 100.0 34 ................................ CACGCTAAACGTAAGCTCATCATCAGGATCCATC 255066 32 100.0 34 ................................ TAGGGAACACTAGAAAGGATAATCTAACAGTAAC 255132 32 100.0 37 ................................ GCTACAAAGTGATTGCGTGGATTTTGTGATTTAGTGA 255201 32 100.0 35 ................................ ACTTTTTCGCCGTATATTTCAACGGCGATCTCTTT 255268 32 100.0 34 ................................ TTTATAATACAATCAAGTTTTAGGGAATACTAAA 255334 32 100.0 35 ................................ CAATCTTTGCTATTTAGCTCTTTCATTGAAAAAGT 255401 32 100.0 36 ................................ CCATCGTGGGCGAGAATCAATAGATGATGAGCGAGA 255469 32 100.0 33 ................................ AGGATTGCGAAGTTTTGCAGAATTAACACCGCT 255534 32 100.0 34 ................................ CATGGGTCCGATATAACCAATAAATAACAGTTTT 255600 32 100.0 34 ................................ ATCACGAGCTAAATTCAGCTCACCAGCAAGGCTC 255666 32 100.0 35 ................................ CTTTGTTGGCTAGAAAAAGAAGATGGCAAGATGGA 255733 32 100.0 34 ................................ TATTTATTATTTAGTCTCTCTTGAGCAATGTCGA 255799 32 100.0 34 ................................ CTTTGCGTGTTTGTGGTGAATACCAAAGGCGAGT 255865 32 100.0 33 ................................ ATTTGAACCCATTTAGCGAAATACTTTGGCGTT 255930 32 100.0 35 ................................ GTATGGTTCGTGCCACCTAATAATCTTATGATTAG 255997 32 100.0 34 ................................ TACCGATGACTTACTTAAACTAAAAGCCCAAGTC 256063 32 100.0 35 ................................ TACGCCCATACGGTTAGCACTCTCGTCTAGCAATG 256130 32 100.0 35 ................................ TCGAATGGGCGAAAGAAGCTGACGAAGCAGATGTT 256197 32 100.0 35 ................................ CAACCGAGCGTAGCACGCAAAAGCCGTTATAACCC 256264 32 100.0 33 ................................ CCTAAATTCGCTAAACTAGGCGATACGGCTTTT 256329 32 100.0 34 ................................ GTTTATGACGGCTTAAAAACAATGCGTAAACGTA 256395 32 100.0 33 ................................ TTCATAGTTTTAACCTTATAAATTTTCTTGTAC 256460 32 100.0 34 ................................ AAGGCATTGCTAAACGTATGGAAAAAGCGAAAGA 256526 32 100.0 35 ................................ AGGTTTGATGTTATCAAATGCACAATTATCTATTA 256593 32 100.0 35 ................................ TTTCTCACGACCTAAAGCAATCACATCTTGCGTTG 256660 32 100.0 35 ................................ GTTGCAGATCGCCCATCACTAGCAAGAATGTACAG 256727 32 100.0 35 ................................ TTATTATTAGGTAAAACCAATAATATATTTAGTGC 256794 32 100.0 35 ................................ GATTGAATAGACACCGCCCAACGCTTTTACAAGTT 256861 32 100.0 34 ................................ CGATAAGGCGTTGTTTGTTTAAAAGCTCGTATGC 256927 32 100.0 35 ................................ ATCATCAGGTTTAGCCCCTTTAGTTGGAATAGTTA 256994 32 100.0 34 ................................ TACACTTCTAAAGCGTTGGAATGAATATAGAGGA 257060 32 100.0 34 ................................ TCTTAAACGCTCTCTATCAAAAAGGCGTTTCTTG 257126 32 100.0 35 ................................ ATATAAGCACGAACGGCTTTATCCATTTCGATGGC 257193 32 100.0 34 ................................ ATCTTTTAGAGAGTGGTAAAAATGGCATTAAGTG 257259 32 100.0 36 ................................ CCTGCTCTCAAAAAGCAATCCACAACGGTTATCTCA 257327 32 100.0 35 ................................ AATAAAAGGAAACCCTATGTACAACAAAATAATCA 257394 32 100.0 34 ................................ CGCCTTTACCACTTGGATAAAGCGAATTCGCAAG 257460 32 100.0 34 ................................ ATCAATGTCTGCACCTGTTTCTGCGCTTAAACCT 257526 32 96.9 35 ..T............................. CGCTCAGCCACGGCGTCCGTGTCAATCCATTTGTC 257593 32 100.0 35 ................................ ACTAAAAAACACTAAAAACAAAACCATAAAAAATA 257660 32 100.0 34 ................................ CAGCGCAAACTTGCGAAGGAAATCCCCTACGGCG 257726 32 100.0 35 ................................ AAAACTGGGTATTTGAAGAAGTCCTACCGCAAATC 257793 32 100.0 35 ................................ GATTTGCGTAATCTTTTCAGTTTTGGATGCATCAT 257860 32 100.0 34 ................................ TTGGTAAAGTTGGTACATTTGCTCGCTATTGTGA 257926 32 90.6 34 .........TT.A................... TCATTTATGTTTTATCCTAAGTATTTTGATAAAT 257992 32 90.6 33 .........TT.A................... GGTATATCAGGTACAGGCAAATCACGTTTTGTG 258057 32 90.6 35 .........TT.A................... CATAAACACAAAATAATTCATCAACAAAACGCCCC 258124 32 90.6 35 .........TT.A................... ATTGTAGGGCATAACGGGATTGGGGTGATTTTGGG 258191 32 90.6 36 .........TT.A................... AAGCCATAAACGCTTCGCTTCGCGGTAGCTGTGCTC 258259 32 90.6 34 .........TT.A................... CAACTGCTGACGAATTTCAAGGGGTGTGACGTTG 258325 32 96.9 34 ............T................... GTTTGAGTTCAGATATTTCTTTGTCTGTTATTTT 258391 32 96.9 35 .....................C.......... TGATTAAGTCAATAAAGACCATAGATTAGTTCCCG 258458 32 90.6 34 .........TT.A................... ACCAATACGCATCACAAAATCATCAACACTGGCG 258524 32 90.6 35 .........TT.A................... ACTATTTGCAACAGGGGTTGGATCTTGCTCATTAT 258591 32 87.5 34 .........TT.A........C.......... CAACAGCTTTACTATTGGCTCGCTTTCAAGGGCT 258657 32 90.6 34 .......T....A....T.............. GCTCAAAATAACTATTTCTGCCCAAAGCTAATGC 258723 32 78.1 0 ..T...T..T...A.A......A.A....... | ========== ====== ====== ====== ================================ ===================================== ================== 106 32 98.8 35 GTCGCTCCCCACGCGGGAGCGTGAGTTGAAAC # Left flank : ACCCGGCTGTAAGATGTTTAAGGAGAGAATATGTTGATGTTAGTTACCTATGATATTTCTTTTGATGACCCCGAAGGGCAAGCTAGACTGCGTCGTATCGCTAAACATTGTCTTGATTATGGCGTGCGAGCGCAGTATTCGGTGTTTGAATGTGATGTTACCCCAGACCAGTGGGTCAAGCTCAAACAAAAATTATTAGAAACTTACAATCCTGAAAGCGATAGCTTGCGATTCTACCATTTGGGCAGCAAGTGGCGAAATAAGGTCGAACACCACGGCGCAAAACCTGCGGTGGATGTGTTTAAAGATGTGCTTATTATCTAACGCTAACCTGTGGTTCTCATCAAAATACAGTAAGGTTAGCGAAAAGCTAACCCATTGAGTTCTTTAACAATTGAAATAACTTATTGAATTTCTTAGAATAGAAATGTTTTCATGGCGATAGCTTAGCGATTTTGCTTATCTATCTCCTTGAAAATACTGCCATTTTCATAATGGCA # Right flank : CTAATTTAAGCTAGCTTTTATAGATAATCCAAACTTCTATTCAGAGAGATAAATTGAAATATACTAAAGTTTCTTATTTATTTTTAGTAGACTTGTTAATTTACTTTTTTTCTGTAAATCGGATAAGATTCTATTAAGGCAAATTAATTTCAGGAATAAATATAAATGGATCAGCTTTATCTCGCATCGAACAGTCCACGTCGTTGGGAATTGTTGCAACAAATTGGTTTACAACCGATTAAAATAGAGAGTGAAATTGATGAGACGCCTTTGATAAATGAAGACGCAAAGTCGTACTGTTTACGCATTGCTTTGGAAAAAAATAAGGCAGCACAAGGGGTGAGATCTCACAAAAATCTTGCAAATTTACCTATTTTAACGGCAGATACGACGGTTTCTGTCGATCATCAAATTCTAGGAAAACCACTAGATCAAGCTGATGCATATCGAATGTTAAAATTGCTTTCAGGAAGAACTCATCAAGTATTTACTGCAGTATG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCACGCGGGAGCGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.30,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //