Array 1 1275-3026 **** Predicted by CRISPRDetect 2.4 ***
>NZ_FZZA01000025.1 Neisseria meningitidis strain Neisseria meningitidis isolate R210, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
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1275 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA
1341 36 100.0 30 .................................... AAACTCAACGCATCTAACATAGTTCACACT
1407 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT
1473 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA
1539 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA
1605 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC
1671 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT
1737 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC
1803 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT
1869 36 100.0 30 .................................... ATAAAAAATAAAAAAAACCAAAAATAATAG
1935 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT
2001 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG
2067 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC
2133 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA
2199 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT
2265 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG
2331 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG
2397 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA
2463 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG
2529 36 100.0 30 .................................... AATATTTTTTTATAAATTGCCATCAGAACG
2595 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGTCGGAAAAATCC
2661 36 100.0 30 .................................... CTGAAGCTGATGAACGAGCACGTTTTGTGG
2727 36 100.0 30 .................................... CGTAGGGATGTGTGTTAAATCTACCGTTTT
2793 36 100.0 30 .................................... CGCCCCCATGCTGATGGTGCGCCTCGCCGA
2859 36 100.0 30 .................................... ACATCTTCGCCGACATAACCTGCTTCGGTC
2925 36 100.0 30 .................................... CGTCTTTCTTGCTGTAAATTTATTATTTTT
2991 36 100.0 0 .................................... |
========== ====== ====== ====== ==================================== ============================== ==================
27 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT
# Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG
# Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT
# Questionable array : NO Score: 6.26
# Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT]
# Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37
# Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41
# AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [4.5,0.68 Confidence: HIGH]
# Array family : II-C [Matched known repeat from this family],
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