Array 1 133777-134567 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUF01000001.1 Thermococcus sp. MAR1 NODE_1_length_1390887_cov_45.695681, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================ ================== 133777 30 100.0 38 .............................. GGCGGTTGAGCGCGTAGGTCTCAGAAACCACCCGGAAA 133845 30 100.0 38 .............................. CTCTGAAGCCATCTCGTAGCAGAGCATGAGCACGACAA 133913 30 100.0 39 .............................. TTCTATATGACAGCCCCGCTGAAGCCATCTCGTAGCCGA 133982 30 100.0 38 .............................. ACCTTCATTTTTCACAACCTCCTTAAAGTTGTCCTCGT 134050 30 100.0 38 .............................. CTGTACAACAAACTCATATGGGAGTGGTATGTGTGCGA 134118 30 100.0 38 .............................. CAGCCTTGACCCCAGTTCCGGCGACAGCACGAGGTAGT 134186 30 100.0 37 .............................. CATAATCGGACAGATCGGCAGGCTCAACCCCGGTGAG 134253 30 100.0 38 .............................. GCATGTACTTCGAAGTGTCCTCCCCCGGCGGAGCCAAA 134321 30 100.0 43 .............................. GAGATCGACACTTTTGACCACTTCTCGCCAGCTGACCTTTCAA 134394 30 100.0 36 .............................. CTGGAAATGAAGGGCTACAAAAAGTAGGGCTCTACG 134460 30 86.7 48 .........................TTGG. GGTTCTCATGCATTTAAGTCCGAGGGGGTGTGGGGGACGGAACGTCCC 134538 30 73.3 0 CCC............C.C...G...A...A | ========== ====== ====== ====== ============================== ================================================ ================== 12 30 96.7 39 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : ACCGAGGACGAAGGATGGGGTGCCGATAGAGTAGCATCACGATGGGAGTCCTTAACTTTTGCTTTTGTCGCTTTTCAGATTTGTTCTGGACAATTGAAGCCTTAATTTTGCCAGGGAAATCGATTTTCGCTCTTTAGTTATTGTCACTTTTTGTTCCATTTTCTCGGATATTATGTAACGAAATTTTTTCGAAGTTTGGAATATGGCCGTGGTCTCGCCCCTTTCAGTCTAAACCCTATCAAAACTGTTTTTTCCTGGCTTTAGCTGGCTTACAGGCCATTTTTCGGGCTTTAAAGACCTTCTAAGTCCAGGGAAATCCCGTGAGCATCTGTGTTCATCAAGTTTTTTAGGCCCGGTAATCTTGGCTTGGGCTCCTTAAAGCGTTCCAGGGGTTCTGTTTTGGACGCCCCAATAGCTTCTTTTACGGCGGTTTCCAGAAAAGCTTAAATATTGGAAGTGGTTTAGGGCTTTATTGGGCAAATGGAGGGAAATTCCCGCCT # Right flank : AGATGAAAAACCTCACTCGGTTGCTTTTTTCTTCTTCCTTCTGCCCCAGCTGACCCCTGCCGTGAGGATTCTCTCCGTTGAGAACAGCCATGCCGTGGCGTAGAGTATGGCGACCGCCACCACAGTTAGGTAAGCCATGCTTATCGCTATCGGCGTGTAGCTGCTGAGGAGGACGTAGCGGTAGTCCACCACAGGATGTGTGAAGGGCACCGCCAGCAGGACGTACTTAACGAGGGCTGGAAGGTCGTTTATGTCGGTGTACATCAGCAGGAAGGCCGGAAATGCCAGGGGCAGGATAACCGCGCTGACCAGCGTTGTGGCGCTCTGGACGTCCTCTGCAAAGGTCGCCACTATCATGGCTAAGCTGAGGGCGATTATTATCGTCAGGAACACAACCAGGGCAAACATCAGCGCCCCCGTGGGGGTGACGACCAGACCCAGGTCTTCGAGGCTCACCCCGCTCGAACCCAGCCCAAAGGAGCTCATGTAGTAGCGCATGC # Questionable array : NO Score: 9.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 514567-513731 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUF01000001.1 Thermococcus sp. MAR1 NODE_1_length_1390887_cov_45.695681, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 514566 30 100.0 39 .............................. TTCGTCGAACTCCTCAAGCTCTATCCTCTTTTCTTCCAT 514497 30 100.0 37 .............................. GAGCTGTAGCTTGCGACATCGACGTCGAAAGTTGCCA 514430 30 100.0 35 .............................. GCGACTTTGAGCTTATAAGTGTATGAATAGCTAAA 514365 30 100.0 39 .............................. GAATTCAAGAAAGAAGCCTTCAACGAGCTTAAAGAGAAG 514296 30 100.0 37 .............................. AGTGCATTTTTGCGGGCATGCAATAGGGGAGAGGTGT 514229 30 100.0 38 .............................. GGCCTTAAGGTCGAGGTAAGCATCTTCGACGTACCTGA 514161 30 100.0 36 .............................. GAAGGAGTGGGGGGAAGGTTCGGACTTATGGCGTAT 514095 30 100.0 37 .............................. CGGGAGTTTTGAGGAGTGGGCGCGGGGTAAGCCTTAC 514028 30 100.0 39 .............................. TAATGCTATCCCATGCGATTAAATTGGCTAAAAACATGG 513959 30 100.0 36 .............................. AGCAGGGTCTACGTGGATGGGAAGGTCTACAAGGTG 513893 30 100.0 35 .............................. CAAGGTTCAAGTCCTTATCGATGACGACGAGTTGC 513828 30 100.0 38 .............................. ACTCGTATAGTGATTAATTGCACACCAAATCTTCCCAT 513760 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 13 30 100.0 37 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : TAGATTGGAGCACGTAGATTTAACGGTTTTGGTTCTATCACGTTCAAGCTCTTTTGATTGGACTTATGGTGCCTATCTGCACCTTTAATCCAAAAAACTGCTCTCAGATGGCCTGGGAAATCGGTTTTTGGTCTTTTTATATTGTTACATCCTGTTTTGTTTTTGCTGTTGTGTTGTTACGAATTTTCTTCGGAGCTCGGGATTGTGGCTTGAGGGAGTCCCTTCCAACTCAAACCCTGTTGAAATTGTTTTATTTTGGTTTTAATCTGATTTCAGTCCCTCTTCTGAGCTTTAAGGGTTTTTGGATGCTTTGGAAATCACTTGAACGTTTTGTTCACTGGAGTTCTGGGACTTTCTCCGGAGATTTTGTGTTATGTTTCCCAATTAGAAGCCTCGAATCTGAGTCTTTCTGGAGCTTCTTTTACGGCGGTTTCCAGAAAGGCTTAAATATTGGGGCGTTCTTAGGACTACACAGACAAAACAGGGCAAAATTCCCGCCT # Right flank : CGCGGCGATTTATTTTGAATTAACATGAGCGTTGAGGGCATAGAGTCTGAAAGTCACTCATCCCGCGCCATCGCCATTTCTATGACCCTATCAAAGACGGTCTTGTGGTTTCCGAAGGCCTCGAACATCCGGTCGGAATATTTGCTGGAGGCGGTTTCGAGGAACAGACGAAGGTTTCTGCTTATCTCATCGTTCATTGGAACGTGAAGTGGCATCGGGTCATAGTAATCAAGCCCCTTCATAAGGGCAGTTGAGAAGTACCAGAGCGTCTTCCTGACCTTTCTACCTTTTATCCTGGAGAAGCTCGCCTCCATACAGTTGAAGGCCGCGTGAAGGAGGACTATCATGTCTATCTCCACGCCCTCCCTCAACAGGTTCACCCTCTTGGGATCGTTTCGCAGGTCCTTTATCCTGTACCCGCTCCGGGTCTGCTCATCGTAGGGCACCTCAACGTCGTAAATGCCCTCGACCCTTGGATCATAGACGAGGACGTCCGTGCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 3 687445-686957 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUF01000001.1 Thermococcus sp. MAR1 NODE_1_length_1390887_cov_45.695681, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================================== ================== 687444 31 100.0 39 ............................... TCCAGGTGCTGAAGAGTTAACATTTCCAACTAAAATTTC 687374 31 100.0 47 ............................... CGTAGCGACTGCTATCCACTTCTGTATAAAATAGTCGATGCTCTTGG 687296 31 100.0 41 ............................... CGCTATCACGCGAACGACTACTACGTGATATACGTGAACAA 687224 31 100.0 52 ............................... ATGTCTATTGGCTCAAAGCGCTTGAAATCGTTTGTTTCAAGTTTCAAATTTT 687141 31 100.0 42 ............................... TCTGTCCAAGAGATGTGGACATCCTTGAGATAGTTTGCGTGT 687068 31 100.0 48 ............................... CTACTAACGCCCTTCATTCCGCCGTCAATTCCCTCGGTGATGTATTTG 686989 31 96.8 0 ..............................G | TC [686960] ========== ====== ====== ====== =============================== ==================================================== ================== 7 31 99.5 45 GTTTGCAAACATGCCTTGCAGGTGTAAGAAC # Left flank : GTTTAAATGCAGTGCTCCATTTAAACCGTGAAAAAGCCTGTAAAAATACGGAAAAAGATATCCAACGCCATTGGTCATCAACCATCACTCGGAACTGGAAGAGAGTTAAGAGAACTTAAATTCGAAAATTAGGAATGCTAAACTCCTAAATTTTAAAAAGAAAACAAATTAGACGCTTTTATAAACTCCGACCAACGAAGGTTCTACAGTCCACGAATGAACCCCAAACGTCCGATAGGGGATTTCCCCAGCCAGAAAACAAACCTCCAGGTTCATGCCTGTAAAAAGGGATTGTGAAAGTTTCCAACGGGCGACAGGGTGAAAAACCTCAGCCCATTTTCCGCTTGCCGTAATGACGTTCCCCCGGATGTTTTATTACCATTCACCAGAGTTCTGCCCGGGAGCTACTGCGGGTTTTTCAAAGAGCCCGGAACAGAACGAAAGGTTTTTATAGAGAAAAATCCCACCCTCAATGGGCAATAGGGGGCAAATCCCCAATA # Right flank : TACAGCCCCATATGATGATAATGAAAAGGCGGCGGTGATGGGATGAAGTATCCCTTCTTTATAACCCGTCATGGGAAGCTTGAGCGGGAAGGTGGTTCTCTTGTTTTTGTTGGAGACATAGTCAAGAGGAGAATCCCTCTCGGGCAGGTGAGCGAAATTCATTGCCTTGCAAGGGTCTCCATGACTAGTGGTGCCATAGAGCTTTTAAGTGAAAGAAGAATCCCAGTTCACTTCTACACAACTAGAGGAGAGTACAAAGGTTCGTTCATCAACGATGTTTCACCGAGGGGAAAGCTTCACCTGGAACAGGCGAGGCACTACCTTGAGTCTGAAAAGAGGCTCTACCTCGCGAAAACCATTGTGGAGGGCATTCAAAACAGCATGGCCCTCGTTCTCGCGAGGATGGGTGTTAATCCCGTTAAACTCAACTCTGTTAAAGTGGATGGAGAAACCGTTGAGGAGATAATGGGGCGGGAAGCTGAACTCTGGAGCCACTTTTA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCAAACATGCCTTGCAGGTGTAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 4 1111113-1112545 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUF01000001.1 Thermococcus sp. MAR1 NODE_1_length_1390887_cov_45.695681, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 1111113 29 100.0 40 ............................. ACACGGTATGCGTCGTATCGTCAGGCAGGTTGAGCACGTT 1111182 29 100.0 36 ............................. GTAAAAAGCATAGAAAACACAGGGTATGAAACATTG 1111247 29 100.0 39 ............................. TACTTCGCTATCTCCTTGCTAACGTCCCAGCGAACCTTA 1111315 29 100.0 38 ............................. AGCACCTCCGCAATCGCCGCCGCGAGCTCCTTCATCGT 1111382 29 100.0 36 ............................. AACTTCGCGTCTTCCCCTGTTATCTCCGCTACGTAG 1111447 29 100.0 39 ............................. AAGTAACCGGAAGTGGTTCAGTTAGGTCAACGCATTTAG 1111515 29 100.0 36 ............................. TTTTTTCTAAGCATTCTCACCGTTCCATTCACAAAA 1111580 29 100.0 40 ............................. GAAGAAACCGCCGCCGCTATCGGTATCCTTGGTAATGCAG 1111649 29 100.0 38 ............................. AGGAATTTTTGAAATCAAATGATAAGGTGGTATACTAT 1111716 29 100.0 37 ............................. AGAGGGACGGGACGGTTCAGGGGTTCACAGATGATGT 1111782 29 100.0 36 ............................. ATCAGCTCCTGAGCATTCATCACCTCAAGGTTCTCC 1111847 29 100.0 38 ............................. CCAAATTCACTATCGATGTCGTCAGTAGAAATATATCT 1111914 29 100.0 34 ............................. TGGTGGGGTAGTTTCAAATCAGTAAACCGCTCCG 1111977 29 100.0 37 ............................. TCGGTTAGTTCTATGGCCTCCGCATGTTCATAGTCTT 1112043 29 100.0 39 ............................. TACCGCCGATGACTTGTTAAGCCCGACAGGAAAGAAGCT 1112111 29 100.0 39 ............................. GGGGTTGGGTATCGGGAAAGGCCAAGGTATTGACCAAGG 1112179 29 100.0 38 ............................. TGGAACGAGGCAAGGTGTGGCGGAGTGCTCGGAGTGCA 1112246 29 100.0 38 ............................. ACAGCAATTGGGCGGACGTAGTAAATTCGTCAGAAGAT 1112313 29 100.0 40 ............................. TTGTTATCTCCCGGTCAGGAGACATGTCACCTATTATTGC 1112382 29 100.0 38 ............................. AACTTCGACGGCAAAGTTCCGACGGCTCCGCCCAGCTC 1112449 29 100.0 38 ............................. GGATACTACTGTAAAGCATAAACTGGACATTGATATAA 1112516 29 89.7 0 .......................TC...T | C [1112539] ========== ====== ====== ====== ============================= ======================================== ================== 22 29 99.5 38 GTTTCCGTAGAACGGTATCGTGTGGAAAG # Left flank : GTGCTACTCTTCGATGGGGAACCGGTTTTTGTGTTTTGATTTTTTCTTTCTCGTTTCTGTCTCTCCACTTTTAGGAATTCGAGCAGGTATAACTTTTCTTTTCCCCGAGTTTCTATTCTGCGGCGCATTCTCTCCCGGTTTACCTATTCAATGGTAATTTTCCGTCAAATGTGTTCATTTGACAAATAAGGGCTGTGAGGAGGTGCCGAGGTGGAAAACGAAATAAGGGACATGATAGAATGGTCGAGGGACATTCACAGTAGTTCGCCATTGATTTTAGGTTATTTTATCGAGCCGCTGGTAAAAAGCCAGGTTTCGAACCCCTAGATTTTTCCGGGAAGTGAAACCCTGTAATTTTGAAGCAATTGAGGTCTAACAGATTCTTTTTAGAGAATGGGTTGGTGTTTTAACAGGACTGCATTGATACAGATTCCCTGGAAAAGACTTAAATACCAGTTTTGACAGTACAGTAATTGCAAAAAGAAGGAAAAATTAGCAGG # Right flank : TAAGTGGTAAAGCAACACTCAGGGAGGTTTTCCCTTGAAGAAGCCCTATTACATCACCCAGATGGGGATCCTTGAGAGGAGGGGTAACACGCTGTTCTTCGAGAACGAGAACCTGAAGAGGGCCATACCAATCAACTCCACCAGCGAAATCCACTGCTTCAAGCCGGTGACGCTGACAAGCGGGGCCATAAAAATACTCTCAGAAAAGAACGTCCCGGTTCATTTCTACAACAAGCATAGCTACTACCGCGGCTCCTATATGCCTGTAGAAGGGCAGGTGAGTGGAACGGTGGTAATAAAGCAGGCCGAGCACTACCTCGACCCGGAGAAGAGGTTATATGTGGCGAAACAGTTCGTGGAAGGAATAAAGGCCTCGATGGTTGCCCTCCTCAAGGCCCACAAGGCTAACTACAAGGTGATTTCAGAGGTTGAGATTGAAGGCAATAGTCCGGCCGAGCTGATGGGCCTTGAAAGCCAGCTCTGGAAGGAGTTCTATGGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGAACGGTATCGTGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 5 1318354-1317230 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUF01000001.1 Thermococcus sp. MAR1 NODE_1_length_1390887_cov_45.695681, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 1318353 30 100.0 43 .............................. GTGCTTTGAGAACTCTGGGGTCTGGCGGAACAACTTTTTGTAC 1318280 30 100.0 42 .............................. ATACACGGACAAGCGGTGGGGTTTCTTGAGTTTCGTGACAAA 1318208 30 100.0 38 .............................. GTCGAACTCGGTAAGCTCAGCCACGCGGCCCACCATAA 1318140 30 100.0 39 .............................. GTCACTATTGCGTCGAAGATTGTGTAGGCCATGTCCTCG 1318071 30 100.0 34 .............................. CGTTGAACATCACGAACCTCTCCTGACCAACCTG 1318007 30 100.0 36 .............................. CTCTCAATACACGCCGAATCCACCACCGCGTGGAAA 1317941 30 100.0 38 .............................. GTGGGGTTTCTCCTGTATTATTCTCTTAAGCTCGGGTA 1317873 30 100.0 37 .............................. GGTTGTGGACTACTTCGCGACGGGGTGAGAAAATGGA 1317806 30 100.0 37 .............................. TTGGCTTTGTACTAGCATACTATCATCACTTCATCGC 1317739 30 100.0 38 .............................. AGGGGATTGTGATGTACGCCGCAGGAATGGAGGCCGGC 1317671 30 100.0 37 .............................. GAACGGGACAACACTAACAGACGCTGATTTTGTATTA 1317604 30 100.0 37 .............................. TAGAGAACAGTTGCAGTCACAAGAAAAATTACCTTAC 1317537 30 100.0 36 .............................. CTCCGAAGGCATCTGAACCGAGAACGGGAGCGGCTC 1317471 30 100.0 37 .............................. ATGAGGAACATCAGGAGCGCGAGGGCGATGTAGGGGT 1317404 30 100.0 36 .............................. GTTTTTTGAGATCCTCATCGCTGAGGCATATTTCAT 1317338 30 86.7 47 .......................C.CCG.. GTTTTTATGAGTTTAAGTTCGAGGGGGTGTGGGGGACGGAACGTCCC AA [1317322] 1317259 30 86.7 0 CCCT.......................... | ========== ====== ====== ====== ============================== =============================================== ================== 17 30 98.4 38 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : GTCTGGAAGCTGAGGGAGCTTGGATTTGACGTCATATCACGCTGAGGGCATTTATTTTTCAGATACCTCTCTTCAGAGGGGGTGGTTTCTAAAACTCCGCCGGTGAGCCTCTCGGGAAATCACTTTTTATGGTTCCGAGAGTATAACTTATTGTCACTATTTTGAGCATTGATTGTAACGAAATTTCTTCGAGAATCATAACAGGGAAGGAGCAGGGTTCGAAAACGCCGGCAACTTGTTAAAATTGGATATTTTGGATTTTAAAATATTAATATCGCTGTTTTCGGCGTTTGGACGTACCACGGTGCTCGGGAAATTACATGAACTTTTCTGTTCACTGAACGTTTGCAGTCTCTTGGACTCCCCTTTAACTCTTCCGAGCTCTCTGGCCTCACCGTTTCAGGCATTATGAGAGTCCCTTTTCTATCGGTTTCCAGAAAGGCTTAAATATTGGGAGTGTTTTAGAGGCTTATTAGGCAAATGGGAGGAAATTCCAGCCT # Right flank : CAAACTTACAATAACTCTCCGAACAAGAGGTCTTCCTTTTTTCCTCCCGCCTTCTTGAAAACCCTCTCGCTCCAGGAGACGCTCCCAACGTCCCTTGGCCTGTGGGCGTCGCTCGCGAAGACCAGCTTTACACCGCGCCTTATGCATTCCCTTATGAAGCCCATATCTGGAACGCGGTAGCGGGAGCTTATCTCGAAGGCCTTTCCTTCTGCCTCCGCTAGCTCTATGAGCTCCCTCAAGCTTTCCTCATCGGGATAGCCGATGTACGGAAAACTCGCCCCGAAGTGCCCGATTACGTCAACGCTCTCGTCTAGTATTGCAGCTTTCACGAGCTCAATGTATTCCTCCGGGTCATTTAGCCAGAGGTGGACGCTGGCAATGACGTAATCGAGCTTTTCAGCAATCCCCGCGGCCACGTCGACGCCGCCGGAGGTTATATTGGCTTCGATCCCTGCCAGAACAGTTATCTCGCTCTCCTCTCCCCAGTGGCGGATCTCTCG # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //