Array 1 274663-272560 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABWOL010000002.1 Klebsiella pneumoniae strain D8 isolate D8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 274662 28 100.0 33 ............................ CATGAGCAAGACAAAAAGACCATCGAGCAGGAA 274601 28 100.0 33 ............................ CGAGCTGACTCTGAGCGCATGCTGGACAAGCTC 274540 28 100.0 33 ............................ TTAAGCCGCCATCAGGCGGCTTTCTTGTGTGTA 274479 28 100.0 34 ............................ TGACTAACGAGGAATTACAGGCTGTATTAGCCGA 274417 28 100.0 33 ............................ CCTGGGATTTTAGCGTCACATACCTGGCGTCAA 274356 28 100.0 33 ............................ CACTCTGAATGTAACGTGCAGCATCATTCAGCT 274295 28 100.0 33 ............................ CCACCCGAACACCGTGCAGCTCAACCTGAGCAC 274234 28 100.0 33 ............................ TTTGCAACAATATACCACTTCCCGACCTTTGAT 274173 28 100.0 33 ............................ TAGGTTTTTGTTGTCTGATTGAATGGGTTGTCA 274112 28 100.0 33 ............................ TGCTTCTATTAACCTGTTTCTGTAGCTTAAACC 274051 28 100.0 33 ............................ TGATGTGGGAGTGTGGTGTAAAAAACTCTCTTT 273990 28 100.0 33 ............................ TCTTATGCACGGTGTTGGATACGAACCACTCCA 273929 28 100.0 33 ............................ TACCCCATTTCTGTCTTTTGTAAGCTCCATCAC 273868 28 100.0 33 ............................ TATTAATGCTTACGTTTCGTGGTTTGAGGATGA 273807 28 96.4 33 .......T.................... CGTCGTGAATTACGGCAATACGCTGGACCGCAA 273746 28 100.0 33 ............................ CAGTACCGCCAGCAGCGCCTTGATGCCATGTGG 273685 28 100.0 33 ............................ TTAACTATGCAGCGTAACCGTGCTTTCGTCTCA 273624 28 100.0 33 ............................ CTGCAAAAGCAAAATGTTGCTCTGTCAGGTGCA 273563 28 100.0 33 ............................ TATCAATCTCTGAAATCATTTTGTCTATTTTGT 273502 28 100.0 33 ............................ CGCGACGACCTCGTCATCCTCCCCGCTGCGGCT 273441 28 100.0 33 ............................ TACACCCAGCTCTTTGACGCAAAGGCTCAGGAG 273380 28 100.0 33 ............................ TCCTTGGTTCGTTTCTTCTGATGTTTGCAAGGC 273319 28 100.0 33 ............................ CTGGTTGACGTATGCCGTGATGCTGCTGGTAGG 273258 28 100.0 33 ............................ CATTCGAGTCAGTAAAAGCGTCTAGTGCTGACG 273197 28 100.0 33 ............................ CGCTGTATGCCCCCCATCCTTCGCAAGCACTAC 273136 28 100.0 33 ............................ CGATGACAACTTTGCCTACTTCGCTGCGCTGGC 273075 28 100.0 33 ............................ TTCCTCTTCTTCCTGACAATCAGCGCAGCGCTG 273014 28 100.0 33 ............................ TGCGGGTGGATGACAATAACGCCTGGCGCGCCG 272953 28 100.0 33 ............................ CCTGTTAAGGATGACGCGGGGAAATGGGTTATC 272892 28 100.0 33 ............................ TCGATGGCGAGCTGCTGGTGAAAAAGTCGATAC 272831 28 100.0 33 ............................ TCCAGGCCAGATCTGTTTGGGTTGGTGTCGAAG 272770 28 100.0 33 ............................ TGAAGGTGAGCGCCAAAAGGAGTGGAAGCATGC 272709 28 100.0 33 ............................ CGGCTGCGTTATCCGGCAGCACGAACTGGACCT 272648 28 100.0 33 ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT 272587 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 35 28 99.9 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCTTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGTTACAAATTGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 284116-283416 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABWOL010000002.1 Klebsiella pneumoniae strain D8 isolate D8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 284115 28 96.4 33 .............A.............. CTGATTCAGATACATCACCGCCACCGAGATAGT 284054 28 96.4 33 .............A.............. CCGCACTATCCCTGCTGCGCCTGGCATCCAGAT 283993 28 96.4 33 .............A.............. TATGGGTTGCAGTGTAAGAGCGGCAAACGAAGC 283932 28 96.4 33 .............A.............. CGGCTCTTTTTTATCTCCTTCATCCTTCGCTAT 283871 28 100.0 33 ............................ TGATCGGCGTGCCGTTTGTTGGACCCGAAATAG 283810 28 100.0 33 ............................ CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 283749 28 100.0 33 ............................ TATCGTGCAGAGTCACAACCTGACGGGATTATC 283688 28 100.0 33 ............................ TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 283627 28 100.0 33 ............................ TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 283566 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [283557] 283504 28 92.9 33 ............T.T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 283443 28 89.3 0 ............T......A.......T | ========== ====== ====== ====== ============================ ================================= ================== 12 28 97.3 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACACACGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //