Array 1 48777-49720 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABIWV010000014.1 Faecalibacterium prausnitzii isolate MGYG-HGUT-00039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48777 28 100.0 33 ............................ CAGCGGCTCAGGCTTTCCAAGTATCGCAAAGCA 48838 28 100.0 33 ............................ TTGCGGCCCGCCGCAGCGGCGCGAGCCGAACGA 48899 28 100.0 33 ............................ CCTGATGTGCATTTCCTCGGCCTTAATTCCGGC 48960 28 100.0 33 ............................ CTTCTGCGCGGCCTTCATCCCGCCGCGCTGATA 49021 28 100.0 33 ............................ CCAACATCCACGAATATCATCAAATGATGGCAA 49082 28 100.0 33 ............................ CAACTCCTTTCGCAAAGTCGGGCATGGTCGGCG 49143 28 100.0 33 ............................ CAGAAATTGCGCTCTTGTCGTTGATGTTCTGCC 49204 28 100.0 33 ............................ CGTCAGTGGTTCAGAAAAAACAAACTGGATTAT 49265 28 100.0 33 ............................ GTAGTCGTGGTAACGGTTTACCGGAAGTGGTCT 49326 28 100.0 33 ............................ CGTGAGAGTGAACAAAAACCACTCTTGCGTTTT 49387 28 100.0 33 ............................ TTGTATGCGGCTGAAAGCCCACAAACGAGAGCT 49448 28 96.4 33 ..............C............. CATTCAGGAATCGCCGAACCTGTTCAGCCTGAG 49509 28 92.9 33 .............GC............. CGCAGGGCCGTCGCCCTTCTGCGGCTGCAATGG 49570 28 89.3 33 .............GC.........C... TATGATGTACTCCGATTACTGCATGGTCGCCAA 49631 28 92.9 33 .............GC............. CAACGCCGATGAGCAGACCCGCTTCCTGAGCGG 49692 28 82.1 0 ..............C........T.CAA | C [49714] ========== ====== ====== ====== ============================ ================================= ================== 16 28 97.1 33 CTTTTCCCCGCATATGCGGGGGTGATCC # Left flank : GCCGCGTCCGATTCCATCATCGAATATGGAGCGCTGCGGGTCCGGGACGGTGTACCGGTGGAGGAGCTGACCATGCTGGTCTGCGTGGAAGAAAACGTTCCGGCAGAGATCACAGCCCTGACAGGACTCAGCGCTGCGGAATTGCAGCAGGGAACAGAACCACGGGAAGCGCTGAATAGTTTTTTGTTGTTTATTGGCAAAGACCCACTGGTGGGACATAATATTGCCTTTGATCTGGAGTTTCTGCGCATGACCTGCAAACGATATGGCTTTCCGGCACCGACCAACCGCCAGATCGACCTTGCACAACTTGCCCGCCGAAACCTTACAAGGATCGCAAATTATAAGCTGGTGACGCTGGCACAGCATTTTCAGCTGGCAGAAAAAGTGGAGCATCGCGCCCTGCCGGACTGCCGTCTGATACAACAGGTTTATTGCAAACTGAAGGAAACAGCGGTACAATAGCAACAGGAGGCACGGTGCTACGGGATCTTTTTAGT # Right flank : AAAAAGAACCACGGGCGCAACGGAAAGTGAAATAATATTTCTGGAAAGGAGAACTCTGCAATTTTATCGCCCGCCCAGGCTGCGATCAAAAATCCCCGCAAGGTATTGCGTGAGGGCTTGAGAAAGCACCAATAAAGCGAACAAAGCCCCCGGTTTCTGTGATAGGAAGCCGGAGGGCTTTTTGCGTCTTGTTTTGCGGGCGAAAAGAAGGTACAACAATAGCAAGTGACTCATATCTGCGAGGTGATACCATGCTGAACATCTCTATGACTCACTGACAGCCAGCAATGTGCAGCTTAAAGGTGTTGAAAAGTTTACATGGATATGATTGATTCGATCTGTGCGCTGTGGTAATATAAGAAAAAGAAAGGCGGTGAGTCTGTGGCAGAAAAAGACGCGTCGGAAAAGATTCTGGAATCCTACAATGATGTGTTCTCTGATATCGTAAACGTGCTGTTATTCAACGGAAAGCAAGTTTTAGGTGCAGATGAATTGGAAGA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCGCATATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9821-10050 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABIWV010000016.1 Faecalibacterium prausnitzii isolate MGYG-HGUT-00039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =================================================== ================== 9821 23 95.7 51 ........C.............. CCGAATTCATCGGTCCTTTTTCAATGTTTTTCAATGTTTGATATTACAACT 9895 23 100.0 46 ....................... TCCATTTTGAAGTGGGTAATTACTGGATAAGAATCATATTGCAACT 9964 23 95.7 41 ..................A.... AACGAAAACTTTTTGTTTTGGTCTAAGCAAACCTTACAACT 10028 23 78.3 0 ........C........AAC..A | ========== ====== ====== ====== ======================= =================================================== ================== 4 23 92.4 46 TATCCCCGTAAGGGGACGGAAAC # Left flank : GGAACTGCAGCGGCTGCGGCTTTTCCGCGATGCAGCCGATTATGCCGGTGAGGTGGCGCAGCCGGTGGATCCGGAAGAAGACTACAGCGCCTATGCCGCACAGGCCATGGAAACGGACAGCCGCGCTTATGCCGCTGCCGGTGTGCAGGAATACTACCACCGCATCGCGGTCTATATGGCGCAGAACTGATGTTACAACAGCAAATGCGGAACAGAACCGTTGACTTTTTCTGGAGGCACTGTACTGGGAAACATGAGCGTGTTGCGTTCTTGAAACGTCGCCTTTGTGCTTTTCCTTTCATAGGGCAGTGCGAACCTCCTCACGGCACAAGCCTCTGCCATCCTGAAAACCTCCGGTTCGCACCACAGAAAAGCAGTATTTTGCCCCAAATGCACTTTTCTTTTCATGCAATTCAATGTATAATACGAGTGTAATGTATATTTGCTCAGCTTCGACAGACTTTTTTCGATGTTTCTTAGAGAAGTTTGCTATTACAATT # Right flank : AACACCTCCGTCACTGGCGTTTTACCAGCAGCGGAGGTGCTTTGTTTTATCCTTATTCTATTTACAGGTTACAGGGCAAGCGCCATGCCTGCGGAAATGGTCATTGTAACAGGAAGCGCTTTGGCACCCTGAGGAACATTTGGCCTCATGGGACGGAGCTCCTGCAGGTAGTCCGTCACATCCTGCAGGAGCTGCTCAATATGAGCAATGTCCAGCGGGAGAATGCGGTCGCTCTGCAAGCCAAAAGAGTTATCGTTTGCATGGTTGACCTGATTGCGGTAATGTATCACCCTTTGATAAAGCATTGCCGCTCCTTCGACCTGTCGCTGTACCTTATGGTCTATGACCAGCTGTCCAAAATCAATTGCCTCCTTCACATAGTCGTGGACCTCTTCTGCACTTGCCACGCCAAACAATATATTGCCGTCTTCATTTTCTCTGTTTCTGTTCAAGCGCAAATCTGCCGTATAGTGAAGTTTTTGCTGCAGCAGCGCCATCCG # Questionable array : NO Score: 3.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:-1.5, 6:0.25, 7:-0.14, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATCCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.88%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 12936-12566 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABIWV010000016.1 Faecalibacterium prausnitzii isolate MGYG-HGUT-00039, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 12935 32 87.5 36 T..T.T.C........................ CAATCTGGCTTGGAACTGGACGTATTATTGTAGGAG 12867 32 100.0 36 ................................ CCTGTCCGCAATGCAGGCAGCGTCCGATTTCTGTGC 12799 32 100.0 35 ................................ GTGTAAAATGATCGAGTTTAAGGAAGAAGTACTCA 12732 32 100.0 35 ................................ GATGTCTTGTATGTTGCCCAGTACACTGGACCAAG 12665 32 100.0 34 ................................ TGTAGATGAAGAGGCTATTTTGACACCTAAGTGG 12599 32 90.6 0 ........................T...A..C | G,A [12571,12573] ========== ====== ====== ====== ================================ ==================================== ================== 6 32 96.4 35 GTTATCGTCCCCTTGCGGGGATAAGTTGCAAT # Left flank : GCGGAAAGATCATCCGCCAGATAAACGATATACGCCGGGGAATCGGCAGGCAGAGCCTTTGCCGCACCGCGCAGCGCGGCGGCGTGGTGGTAGCGCACACAGTCCAGCGCTGGTGCCCAGCCTGCACCCGGCAAAACGCCGTGCAAAAACTGGTAGCCCTGTTCACTGTGGCTGCCGCACTGCCCACCGGCACGGTACACCGCTTTGCCGGTGTCGTGCAGCAGCCCACCATAGGTGGACTGCAGGGTGAGAACGTTCAAAATACCATCTCCTTTACGGGTTGTGGAAGAATTGCACAATAAACGGAAAATGTATTTGTCGATTTTGTGAGAGATGCTCGGAATTAGCTTTATTATAACATATTTTGTCGCTATGCAAAAGCTGTAACAGAAAAAATATCACAGCAGCTGCAATCATTCCGTTCATAGAGAGACAGCCCACAGAAAACAAAGAGCTAAGGTTTGCAAAAGAAAAACTCCGCATCAAAAAAAGATGCGGAG # Right flank : GGCATATCATGAGGTCGGACATTTATTTCCGCCCCCTTACGGGGATCATATACTAAATATATCACAACCCATCGAAAAAAGGAAGAGCCAGAAGGTTGGAAAATGTTTACTTTACTGTAATGCAGTAAATCTGCATAAAAAAGAACAAATGCAGACTCTCCGATTATAAACGCCGCAGTTGGTAAAAAGTTCCTTTTCAGGACGGCGAACCATACCGTCGGAACCGGGTAAACACGAAAACGCTCTGCTTCAGAGTGCTGCCGTCCGGAGAGATGGTCTCCTGACTCTTACGGAAAGAGCAGGCAGAAAATACCGGGATGCCTGCTCTCTCCAGCCGCAGGACGACCCGGTAGACAAAGGTAAACTCGCCCTGACAGAGCACAGCGTCCGGGTTCATGTGCAGGATGCGGGCGGCATACGCGGATGCCAGCGAGTCCAGTGCCGCCTCATCCGCAGCAGGGTCGATGGCAGGAAAGGCAAGGTCGATCACTTCGCCGTAA # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCGTCCCCTTGCGGGGATAAGTTGCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.10,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //