Array 1 4796776-4794116 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022655.2 Paenibacillus sp. RUD330 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 4796775 33 100.0 34 ................................. GTCATCGCTCAGCACCTCATTGATCGCGCCTTCC 4796708 33 100.0 34 ................................. TGATTGTGAAATTGCTCGGGGTCATACGGAACAG 4796641 33 100.0 36 ................................. AAAGGTTGTTAGCTGGGACAAGCTACCCGATGCGAA 4796572 33 100.0 33 ................................. GGAAGCAATTGCTGTCTTCCAGCGGATCAAGCA 4796506 33 100.0 34 ................................. TCGAAAAGGTGTTCCCGTTTGAAATCAACTTCGC 4796439 33 100.0 35 ................................. AAAGGTTGTTAGCTGGGACAAGCTACCCGATGCGA 4796371 33 100.0 34 ................................. TTACGCCGGCTTGTGGACAAGCCGGCCAGCCGGG 4796304 33 100.0 35 ................................. CTGCCTGGAGAAAAGATAGACTGCTTGCAACTCCT 4796236 33 100.0 36 ................................. AAAGTCACCGTCGAGTACAACATGGTCGCTTCCCAC 4796167 33 100.0 34 ................................. GAAGTCCAGGTTGTTGATCAGGTTGAAAATGTCT 4796100 33 100.0 34 ................................. AAGGTGCCGGGTCTTGATCTCTGCCACCTCAGAT 4796033 33 100.0 33 ................................. CCATAAGGAGGAACAGAGATGAAATTGACAATG 4795967 33 100.0 33 ................................. ATGAGGTAGAGGTTTCGCTCATACGCAGATAGT 4795901 33 100.0 35 ................................. TAGAGGCGGAGAGAGCCGAGCATAACACCACTCGG 4795833 33 100.0 34 ................................. GCCGATGCATTACGCATAGCCGATGAAGCACTCG 4795766 33 97.0 34 ..........A...................... CGGATCCGCAAGAGCAAGAGCCGGAGCCGATCGG 4795699 33 100.0 34 ................................. ACCTTTGGCCCAGTCCAAAAGCTTGGTAGATGGA 4795632 33 100.0 34 ................................. CGCAATTAAGCTCTGGAAGGATACGGATGTTTCG 4795565 33 100.0 35 ................................. CTTGCTGTAGGCGCTCGATCTCTCCCTGCTGGCGC 4795497 33 100.0 34 ................................. AGGAACACAAGACTTACCGAGGCGCGGCCAGATT 4795430 33 97.0 34 ..............................G.. TGGAGACGTTGAACCATCGCGGGGAAATCGTCGC 4795363 33 100.0 34 ................................. ATCAGAAAGTACCGAAGCGCAAGAAGGGAAAGAA 4795296 33 100.0 37 ................................. AAGACCTATTGGGACTTAGATAAACTCATTGACAAGC 4795226 33 100.0 36 ................................. TGGCGGCGGTACTGATCCTGGCGGCGGCACCGATCC 4795157 33 100.0 35 ................................. AGAAACACGACCGTACCGATGCCCTGACTCGTCCA 4795089 33 100.0 34 ................................. CAAAATGGTAATGTTTGTAACGCGCGGAAATCTG 4795022 33 100.0 34 ................................. ATCGTCGCTCAGCACTTGTTGAACGGTATAGTCG 4794955 33 100.0 33 ................................. CCGCGAGTTTACGGTATGGTGCGGCGGGTGCCG 4794889 33 100.0 35 ................................. AGAAACACGACCGTACCGATGCCCTGACTCGTCCA 4794821 33 100.0 36 ................................. TCCGGTACGTCGCGCTCCAGAATATCGCGTAGGCGC 4794752 33 100.0 34 ................................. ATCCGGAATATCGAAAAGCACATGGAATGGGGCA 4794685 33 100.0 33 ................................. GACCATTTGACGCATAAACGGCAAAAGTATGCC 4794619 33 100.0 34 ................................. CTACCGAAGGACGAACTCGCAGCCTACAACGACA 4794552 33 100.0 36 ................................. GCAGAGGATACCGGCTACAAGGTCCAGAAGCGAAAC 4794483 33 100.0 34 ................................. AAAAGGAAAAAGGGTATACGCCGATTGCCCATGT 4794416 33 100.0 33 ................................. CTTGATTCTGGGCAGCAGAAAGCCAGAGGCGAA 4794350 33 100.0 34 ................................. TTTTGAGAGGGGTAGCCCATGAGTAACGAACAGC 4794283 33 100.0 35 ................................. TTGCCATAGACGGCATCTGACAGGAGCCAGATGAC 4794215 33 100.0 35 ................................. ATCATTTGGGTGATCGTCAATAATATCGGTCTTGT 4794147 32 84.8 0 .................-...AC...A.....C | ========== ====== ====== ====== ================================= ===================================== ================== 40 33 99.5 34 GTCGCTCCCCGTGTGGGGAGCGTGGATTGAAAT # Left flank : GGAGGAGGACAACGGAGTGCTTGTATTGATCACCTACGACGTAAGTACCATTACCAGTGATGGACGCAGGCGTCTTTCGCAGGTAGCGAAAAAATGCCAGGATTACGGACAGCGGGTGCAGAACTCGGTGTTTGAGTGTATCGTTGATTCGACCCAATTTCGCCGCCTTCGGTTTGAACTGGAGGAGCTGATTGACCCCGAAACAGACAGCTTGAGATTTTACAATATAGGCGATAAATACAAAACAAAGGTTGAGCATATCGGGGCAAAACCTGCTTACGATATGGATAGTCCGCTAATTCTATAGGAGCAGTACTTTGGTGCGAATGGGAAGCTCCCATAAAAACCTTGGGGGATTCGCACCTCGAAAACTGTCGAAAACGATCTATTTTCGGATAAGTGAAATGTAGTCAAGTATCGGAGCATACCGTATTTATTTGTTTTAAGGCGAAATGAACTTTTTCCATACCTTTATTAGATGGTTTTAGGTGATTTTTGCT # Right flank : TGAGACGGGTGAAAAAATCCCCCGGCTGTGCTAAACTACAGGAATTGCATGTAATTTGGGGGGTAACAAAGCTTTATGCTTATCATAGGAATCGCCGGCGGCACCGGCTCGGGCAAGACGACCGTCGCCCGCTCCGTCATCGACCGGATGGGACCGGGCAAAGTGACATTCGTCTCGCAGGACAACTATTATAAGGATCACTCGGAACTCAGCATGAGCGATCGGGAGAAGATCAACTACGATCATCCCTTCGCGTTCGACAACGAGCTGCTCATCGAGAATCTCAAAACGCTGAAGCAGGGGCTGAGCGCCCAGGCTCCCGTCTACGACTTCACGGTCCACGCGCGCCGCACGGACAAGTCCGTCGAGCTGAAGCCGAGCAATATCGTCATCATCGAGGGGCTGCATGTCCTCTCGGACGAGCATCTGCGCGAGCTGCTGGACATCAAGGTGTTCGTCGACACCGACCCGGATGTCCGCATCCTGCGCCGCGTGCTGCG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGTGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 4805452-4809594 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022655.2 Paenibacillus sp. RUD330 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================================================================================ ================== 4805452 33 100.0 35 ................................. GCGTTCTTGGGCCTCAAAAACTATTGAAATGGGTT 4805520 33 100.0 37 ................................. CCGTCCGTGTGTCCCTTTGGGACAGGCTGACGGTCAG 4805590 33 100.0 33 ................................. AACACTCTTCAACAGCCTTGACCCCTGACTGTA 4805656 33 100.0 36 ................................. TGCTGTTGGAACAGAATGATTGCATTTTTGAGGTTT 4805725 33 100.0 33 ................................. GGCTTGATCGTCCCGAAATTGCGCCGCCTCTTC 4805791 33 100.0 34 ................................. AAAGGTTGTTAGCTGGGACAAGCTACCCGATGCG 4805858 33 100.0 36 ................................. CGCAAGGCGCTGCCAGCTACCAATTGGATTTTGTAG 4805927 33 100.0 34 ................................. CCCCTCTTAGATCGGCAATTCGTAATCTGTCGCC 4805994 33 100.0 33 ................................. CACGGAAATGCTGGCGAATGCGATTAAGCATGA 4806060 33 100.0 33 ................................. CGGATCATCCGGGGCTGTCTGCTCCCTCCCTCC 4806126 33 100.0 33 ................................. GCTCGAAACCAACAATGACACCATCCCGCCAGG 4806192 33 100.0 37 ................................. TTTTTAATCAATGCGTTCGCTGGGTTGATGGAGAACA 4806262 33 100.0 33 ................................. GCCCGTATATCCCGATTGAAAAGGCGGATAACG 4806328 33 100.0 34 ................................. AACATTGACCTGCCTATGACCTACGTCGATGGGG 4806395 33 100.0 33 ................................. CAGTATCCCCCGAACTCCCCGAACGGGATCGAC 4806461 33 100.0 35 ................................. CGTGGGAATTTGTTGTCTCCGAAATAGAGGAAATC 4806529 33 100.0 35 ................................. ACCCAACAAAAACCCACCAATACGCTATTATCATT 4806597 33 100.0 33 ................................. GGCAGTTGGTGGCTTATCCGGCTGTGGAAAAGG 4806663 33 100.0 33 ................................. GGCAGTTGGTGGCTTATCCGGCTGTGGAAAAGG 4806729 33 100.0 33 ................................. CTCGTTGGTGAAGTCTGCCTCCACATAATGCAC 4806795 33 100.0 35 ................................. TTTCTAAGACCTACAGCGAATTCCTGAACAAAGGC 4806863 33 100.0 34 ................................. ATCCAGACAAATACTTGATTTTGAAAGAAGTGCT 4806930 33 100.0 34 ................................. ACTACACCTTACGTAATACGATTTTGTATGCCTA 4806997 33 100.0 36 ................................. CGCGTGTCTATGTACAATTCCGTCACGCGCCCGAGT 4807066 33 100.0 34 ................................. GCCGTCCGGCTCGTGATGCTGATAATGGCATCCG 4807133 33 100.0 36 ................................. GTTTTTACTCGCAGGCGATGTCATCCAGGGCAGGCC 4807202 33 100.0 35 ................................. GCCACAGAAAACACACGAACCGCGTCCTGGTCCAA 4807270 33 100.0 34 ................................. AAGCTCGGCGACCTGATCGTCACGACGCACATCC 4807337 33 100.0 34 ................................. GGCATTATCGGCGGGGAGCTATTGCAGAAAGGAA 4807404 33 100.0 33 ................................. CAGCAATGGTAAAGAACATCGCATCCATCCTCG 4807470 33 100.0 34 ................................. ATCGTTACTTGGAGCAAAGGTGGCATCGGCTACC 4807537 33 100.0 33 ................................. TCCACCAGTTCCCGAAGGGCAAACTCTGCTTTA 4807603 33 100.0 34 ................................. ACATTTTCGGCGGTGACACCGTGACGGAGAAGTT 4807670 33 100.0 35 ................................. CCATCAAGATACCGAATACCTGAACACCCTCTATC 4807738 33 100.0 36 ................................. CTACAATCAGCCTTGGTTATTCCCTGGCTGATGTGG 4807807 33 100.0 36 ................................. AGGCAATGTAATTCGAATAGTTTTATCCGAAAACTC 4807876 33 97.0 35 A................................ CGGAACACGGTTTACCATCCGACGTGTCAAAGCTA 4807944 33 100.0 35 ................................. AATCCTATCAACGATGAATTGGACCAAATTGAAGC 4808012 33 100.0 36 ................................. AAAGAGGTGTGTTGAAATGGGTAACGGTATTCCTAC 4808081 33 100.0 34 ................................. AATACAGGTGCCTGCTGATAATGATCGGATGGCT 4808148 33 100.0 34 ................................. TGCTGTCTTTGTGGTGATACGCTTGTTTTCTGCA 4808215 33 100.0 34 ................................. TGCTGTCTTTGTGGTGATACGCTTGTTTTCTGCA 4808282 33 100.0 36 ................................. TTCGAAATGGAAATCTATTCTGATGCAAAGGTCACC 4808351 33 100.0 35 ................................. GTCCTCATGGGCATTGAGAGCATCCGTCACCTTGA 4808419 33 100.0 33 ................................. CCGGTCCCCTCTCGATCTACCAAAATTGTGCAG 4808485 33 100.0 35 ................................. CATTCGTACAGGACGGTTTCACTGGCGCCGACCAT 4808553 33 100.0 36 ................................. TGATAAAGTCCGATGAGGGCAGTTGCCAGATTGACC 4808622 33 100.0 35 ................................. GCTGCTGGCGTCAATCCAATTCGCTGCGGATTACC 4808690 33 100.0 33 ................................. CCTGTAATCGTCTTTGATGGTATGGGCCTGCAT 4808756 33 100.0 36 ................................. CTTGCTCCGCTCAGGATCAGAAAGGCTTGCGGGCTG 4808825 33 100.0 34 ................................. CGAATCGCCGGCTTCGTAAGCGACAAGCGAGAGG 4808892 33 100.0 35 ................................. AGCCAAATCAACCCCTCCCTTTACCCCGAAATTGC 4808960 33 100.0 36 ................................. GATTTGTCGAGTGCTGTATCCTTGCTCTCGGTGCAT 4809029 33 100.0 35 ................................. TAATTACAAATATTACTATGCTCCTTACAAGGATC 4809097 33 97.0 35 ....T............................ CGGCTCGAAATGATCTGGACGAGCTCAAGACTACG 4809165 33 100.0 35 ................................. CTACTGCTGCGGAGCGCGGAATTGCCTATGAGAAA 4809233 33 93.9 33 ...............C...........A..... GTTTCGTTGACCACGCGGGCGGGCAGCGTTAGA 4809299 33 90.9 34 ...........C...................TG CGTACCCGAAGTCGAGCCCGCGTTTAATCCGGTC 4809366 33 87.9 34 ...........C......T....A........C AACATCTATGTCACCGAGGGCGGTGTGCTAATGA 4809433 32 81.8 96 ..T....T.........A..-...A.......C TGATGGCTATTGTCAGAACGGTCCTAAAGCCGGATCACTCTCCGTTTAGGCATATTGCGTTTAAACTGCCCCCACACAAATGACACCATTAAAAAA 4809561 33 81.8 0 A.........T...A..........T..A...C | C [4809574] ========== ====== ====== ====== ================================= ================================================================================================ ================== 61 33 98.9 36 GTCGCTCCCCGTATGGGGAGCGTGGATTGAAAT # Left flank : CCGCATATTGTTGAACCGCTAGAAGGTGGTCATGGACTGACTCGCGCTGACCGTCCATTTGCCGGATATGAGCTACAAATTCTGGATGATTGGTAAGTTCTGAATTATTCGGCATCCTCTTCCCTCCTAGAAATACAGGACCAAAGCACCTAATTAAAAGTTATTACGAGAACTAAGGTTCGACAATCGCACACACAATCCTTCTTAAATTATGGAAAATATTCCAATAGGGATTTGGATGTGATTTAATCCTGGTTAAGATTGAACATTCCGTTTGGCAATAATAATTTTGTTCCATTATGATAGGGGTGCAATCCTTGTGCGAATGGCAAGCTCCCATAAAAAGCCGGGGAGATTCGCACCTCGAAACTTGTCGAATGAAGTTCAATTTCATAAAAAAGTATTCTCGTCAATCTTTGATACATACCTATTTTGATTGCAAAATTCGCAAAATCAGCCATTCTCATACCTTTCCAGAAAGGTTCGAGGCTGTTTCCGCT # Right flank : CTTGAGTGGGTTCGTTAACTAGCTCAATCATCCCTTTACGGAAGTGTTTCACCAAAAAATGTTGCATCCCCGTCACTCCCCGCCCTCGCCCCCATACCTGCTCCGCAGCCGCCGCACCGCATCCATCAGCTCCCGCCCCGCGAGCTTCTCCGCCTGTCCGTACAGCGGCTCCCACAGAGCCATCCACTCCCGCCGCTCCGGCTCCTGCAGGTCGACGATGTTCATCAGGCGGCCGCTCCGCATTTCCGCCAGCTCCTTGCGGCTCATTTCCCGCGCGCTCTCGTTGGCCCAGCCGGTCGTCTCGCGCATCGCCTCCTGGATGATGGCCTGAACGTCGGCCGGCAGGCTTTCCCAGAAGGAGCGGTTCATCAGCACGGCATACCCGAGATAGGCGTGATTGCTGACCGTCATGTATTTTTGCACCTGGTAGAACTTCTTGCTGTAAATATTCGTGATCGTATTCTCCCCGCCGTCGACCCCTCCGCTCTCGTAAGCCTTGT # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTATGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.50,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //