Array 1 29140-28020 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_RJJK01000011.1 Ornithobacterium rhinotracheale strain LMG 18861 NODE_11, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                                	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	===============================================	==============================	==================
     29139	    47	 100.0	    30	...............................................	GCGAAATGAAATGAAAAAGGTACAAACTGC	
     29062	    47	 100.0	    29	...............................................	TTTAATTGCTTAGCGACCTCAATAGAAGT 	
     28986	    47	 100.0	    29	...............................................	CTTCTTCTTTTTTCATATTTCACATCTTA 	
     28910	    47	 100.0	    30	...............................................	ATCTCCATTGAATAACCATATATTTACAAC	
     28833	    47	 100.0	    30	...............................................	CGAAAAAATTTTATCGGAAATACCTGACAT	
     28756	    47	 100.0	    30	...............................................	TCGCTGAAAGTCATCCCAATCATAAGCATT	
     28679	    47	 100.0	    30	...............................................	CTTTTAGCACAATTCATCGGTGAGCATACC	
     28602	    47	 100.0	    30	...............................................	AGAAAACATACTGAAATTTAAAGGCGTTAC	
     28525	    47	 100.0	    29	...............................................	CCCACTCTTGTGGTCGTCGATTTGCACCT 	
     28449	    47	 100.0	    30	...............................................	TGTACCTTTAATTGAAAAGCAAACATTTCC	
     28372	    47	 100.0	    29	...............................................	TGTTTAAGTTTATTACAATCATCATACAA 	
     28296	    47	 100.0	    30	...............................................	GGCTCAAATACAGACTATAAAGAATTAGCT	
     28219	    47	 100.0	    29	...............................................	CCATTAATTGAGGTTGATGGAACTTCGGG 	
     28143	    47	 100.0	    30	...............................................	GGTTGCTTTCTTTTTTGGCGTGAGGGCGTG	
     28066	    47	 100.0	     0	...............................................	|                             	
==========	======	======	======	===============================================	==============================	==================
        15	    47	 100.0	    30	GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG	                              	       

# Left flank :   CGTCGTAAATTACTGGTATTGACAAGCAAACTCCTTTCATTTTCTTTGTCTTTTCTCGGAGCCCAAGGCTTTACGCTGCTTCCTTGCCAACTTTGCTGGTCAAAATTTTCTTTGGCGAAAAGCAAAGCCTCGTTTGCTATTATGATTGGCAAATCATCTAAAAATTGATGCGTTCTTTGTTCTATGGCACGCATCACCTGCTCTAAATTTCTATTCATTTGTTTAGTTTTTGTATATTTGCTCAATAAGTCAGCGCGGGTAACACCAAGCTGCGCACGGATAGGAGCGAGTTTTTACTCGCTCTGGTCTTTTTTAGGAGTAAATAATTCATGAAGTTTAAGGTGTAAATCATTTGTTTTCAGCATTAGCATTGTAATTCTGTCTACTCTCCAAATCTTATCATTGGCAATTAAAATGACAAATTCTAATTTGTCAAACTTCTTAAAACTTTCGTGTAATTCAGAATCCGCTCGTTTTTTGTTTTTTACAGAAACACTATC
# Right flank :  ATACTTCTTGTTTTTGCTTGTAAATCAAAAAGTTGAAAAGGTTGCTAGGATTGTAGAAATCTGCAACCTTTTTTTATTTGAAATAAATTTTTGATGATTTTTTTAATTCTAGAAAAGTTCCAATTGCTGGTACATAGGTGGTTTTTCCACCTCTTTGGTACTATGGAATATTTCTGTCATACCGAACTGTTTGTCGGTGATTCTAAAAATGGCTACACGCCCATGTTTGGGTAAAATGTCTTTTACTCGCTTTATATGCACTTCTGTGTTTTCTCGGCTTGAGCAAAATCGCATATAGATTGAAAATTGAAACATAGAGAATCCATCGTCTAGCAATTGTTTTCTAAATTTGCTAGCTCTTTTACGGTCGAGCTTGGTTTCCGTAGGCAGGTCAAATGATACAAGAATCCACATAGAGCGATATTGGTTTAAGCGAGTGAAAAGTTCTTCCATTATTTAGCAAAATTCAGGATAAGCGATTTTTCTTCTAGAGCTTTCTA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:68.09%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [0.00,-4.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,0.37   Confidence: MEDIUM] 

# Array family : NA
//