Array 1 317528-318413 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN046811.1 Francisella tularensis subsp. novicida strain FAI scaffold1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 317528 36 86.1 32 ...A.T..T.A........................G ATATTTGAAGCAGCTGCTTATGTTTTGACAAT T,GG [317538,317542] 317599 36 100.0 28 .................................... TAAGGTGTAACACACTACACTTTGCAAG 317663 36 100.0 30 .................................... ATAACGCAATAAAAAGCCCAACACCCACGC 317729 36 100.0 29 .................................... GTGTTGAAAGTAGCCAGAGAGCAGATAAA 317794 36 100.0 28 .................................... TTAAGGAGTATAAAGATGATAAAGCGAC 317858 36 100.0 32 .................................... ATATTTGAAGCAGCTGCTTATGTTTTGACAAT 317926 36 100.0 30 .................................... CTTCTAAGTAATAATCGTATTTTCATTATA 317992 36 100.0 29 .................................... CCCAAATACTTTCGATTTTCTTAAGCACT 318057 36 100.0 28 .................................... ATTTCTGCTGAAACCTATCTAAAATACA 318121 36 100.0 29 .................................... TTAGAGGGGTATGTGATGGATATAATTGT 318186 36 100.0 28 .................................... CATTAGCAACACCAGTCATCACATAAAT 318250 36 100.0 28 .................................... ATTCTAAATTATTGATATTACTTGAGCC 318314 36 100.0 28 .................................... CATCTCAAAAACTAGGAATTTCTACAGA 318378 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 14 36 99.0 29 ATCTACAACAGTAGAAATTATTTAAAGTTCTTAGAC # Left flank : TAATATCTATTAGCTTAACCTTCTCTTTTTTTTGTAGATCAAGAAATTGCTTTACTGATATTTTTTCTACTTTATTCATCTTAGTCTCCTTATTTTAACTTTATCTAATTTAGATTTTACTAATATAAACTTTAAATTTTTTAATTATTTATCACCGCAATATATGCTGTACAAAGCCTCCAATATTTTTGTTACCGAAGGATCGTTGATACTGTAATATACATTTTGCGCCTCTTTCCTACATTTGACCAGACCATTATTTCTCAACACTGATAAATGCTGAGAAAATGCCGATTGGCTCAAACTAGAGTACTCTGCTAGCTCTCCTACTGTCATCTCTCTTCGGAGTAGCAAGCATAATATCAATAATCTCGACTCATGGGATATTGCTTTTAATAATGAAGAAGCTTTACTAGCATTATCTTTCATCTGCATTAAATCCATTTTTATAAGCCAATAAATTCTCAAGTAGTGTTATATTAGCAAATACTAATTTAGAA # Right flank : CCCGTTTTTGCCTAAATCAGCAAAAAAAGACCTAAAATCTATGATTTTTTTAGCATTTTGATATATAACAACAGTCATATTTTTAAATATCTCTAAGAACTTAGTGGTTATTTTAACATAAAGACTAAGGTTTGCAATTTTTAGTCTATAAAAACAACCTCTTGTTCTCTATGAATCGCATAACCATATTTTATCACATCTTTATCTGGAGCATTAAAGATTAAAACACTATCAGCATTTGTAAATAGTGGTACATAGTTATTTTCTATCTCAGCTAAAATCAAGTCTAACATTCTCTTGCTATATTTGAGCTCAAATACCGAATATTGTAAACGTACACCATAACTTTCTAGAAATTTGGCAAACTTTGCACGTACTTTATTATTACTAAAATCATAACTGACTATCAACATACACCCTCCTAGTTTCATAACAAAATATTGGATACTCTGCAATTTCTTTGTCTCGCATAAAGGCACGATAAAATTCTCTTACATATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACAACAGTAGAAATTATTTAAAGTTCTTAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 1595606-1594928 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN046811.1 Francisella tularensis subsp. novicida strain FAI scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 1595605 36 73.0 34 T...T...AA..AG.C.....AA.......-...... AATTATCAAAGCAAATGAAAAAGATTAGCTGTAA A [1595596] 1595534 37 83.8 169 ..........T.AG...........T...TG...... TTTAAAGTAGCTAGAAAATTCACTTTTAGACCTACTTATTTTTATTATTTGAATGCTTTGGTAGTATGTTGAGATCAACATTTTGCTGTAAAACTGTTTTCGTGATTATATTATTTGATACAATGTGCCCAACTAGAAACTTTTAGGAATAATTTACAAAATTAATTAA TG [1595507] 1595326 37 97.3 34 ............A........................ TGGTACGGAATAAAAGAGACTGTTTGCGATGTTA 1595255 37 97.3 36 ............A........................ ATTAGTTGCACAGGTTTATTCAGATACTTGTTTGAA 1595182 37 100.0 36 ..................................... CTATGAGCCTAACAACTGCAGGTTTGTAGATAGAAG 1595109 37 100.0 35 ..................................... TAGAACCAAAGACACTAGCATCTTGTATAACTACT 1595037 37 100.0 36 ..................................... CAGGCAAGAATATTTAGCTACTTTTGAGGAGGCTCA 1594964 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 8 37 93.9 54 GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Left flank : CTTAATCAAAATGCATGATCAATTTATTCAGGAAATGTTACGCAGCTGTAAAAATGCTTATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCACAGAACCTATTTTAAAGACTCTTTTATCTTGGTTAGTTTGAGCTTTTTATTTATACTTTATAAATACTGATAATCTCAATATTAGTTATGTTTACATTTTTGTTGTTAGCTATCGCGTTTATAGCAACCCTATATGCTTTATACTACTTTATTTTAGCTATTGTTAAGCTAATTGTAGCGATATATCATTTTAACTATTTTTTTTCTAAAACTGATTCAAAAAATTAATTAATTCATAAAATAAATTGCTTAAAGTCTATTAAAACTTTGTTTGTCTATTTCTGAAAGTAGTATTTAGATAAAAGCTTATGAAAAATTATTTTTAATGAGT # Right flank : AGCCAAAACAAACCTAGTGTTTGCAAGGCTTTGAGAGTTTTTTAAAATGGTATTTTTTCGCAAATACCCTAATTGTAAAAAAACGTAGACATTTTGCGAAAAAATATCTAAAATTATTAATGTACCAAATAATTAATGCTCTGTAATCATTTAAAAGTATTTTGAACGGACCTCTGTTTGACACGTCTGAATAACTAAAAAGCAAAAATTTGCCACCTAAGTGGCTTTTTAGTTTGGAAATTAATATAACTTGTTTGTTTCTTAGCTCGATTACATCAAGATGGCTGAGAAATTTAATATGGAGATTTCTAAATATTTGCGAGATTTCCGCCTTCAGTGACAATTAGAGATTTTACTATCAACGATCATTACAAAAGTTGTAATATTCACATTGTATACATTGATGATCCGATGCAGATGAGTCTGGCTTATTACCACTATCTAAAGTACTAAGGATATCACTAAGACTGTTGATTTAATCTGCAAATAAATTTATGAAT # Questionable array : NO Score: 3.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-2.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Alternate repeat : GTTTCAGTTGCTAAATTATTTGGTAAACTACTGTTAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: R [matched GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //