Array 1 3509606-3515610 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025435.1 Gordonia sp. YC-JH1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3509606 28 100.0 33 ............................ CGGGTTCTTCGAGTAATCCTCCGGCTTGCCGAT 3509667 28 100.0 33 ............................ CGGTAACGCCATGATTATGGGCGGTGCGGCACG 3509728 28 100.0 34 ............................ GGAGAAGCGATGACCGAGTGCCAGAACTGCGGGG 3509790 28 100.0 33 ............................ GCCGTGGCAAGTGTCCATCCTCCGCGCACTCGA 3509851 28 100.0 33 ............................ GCGGGTTCCCCGACTGGGTTAAGAAGCTCGCCT 3509912 28 100.0 33 ............................ CAGCTTGATGATCTCAGTGATGATCGGGGCGAG 3509973 28 100.0 33 ............................ CGCCAAGACTGGTGGGACGCTGATCGACAAGAA 3510034 28 100.0 33 ............................ CACGAAGATCAGCATGTTCGGCGGTAAGACGTT 3510095 28 100.0 33 ............................ CTGGCCCGACTGGGTCGCGTCAGCAGCGACCGT 3510156 28 100.0 33 ............................ CCACGCCGGGATCACGCCTCAAATCGTAGAATC 3510217 28 100.0 33 ............................ CGCCGCAGCAACCGCGCGCCGCCGCGAATCCCA 3510278 28 100.0 33 ............................ CATCGAATCGAAACCCCGGTAGGCATCGCCTCC 3510339 28 100.0 33 ............................ CATCGCACCGTTCCTCGGCGGCAGCGTGGACGA 3510400 28 100.0 33 ............................ CGACGTCGCGCGCTGCGACAGAGACGTGAACTG 3510461 28 100.0 33 ............................ GGTGCCGAAATACTCGCCACCAGTGCGGATCTT 3510522 28 100.0 33 ............................ CCGGGTCGGGATCGGTGTTGCATCCCATCCAGG 3510583 28 100.0 33 ............................ CACAGTCTCGAGGACGTTGATGTTGTCATCCTC 3510644 28 100.0 33 ............................ TGGGTTGTCGGAGGCGGCGTGGCGTCAGCAGAT 3510705 28 100.0 33 ............................ CGCGTCCGGCGACGGCGGTAACGGCGGCGCGGG 3510766 28 100.0 33 ............................ CGCCCAGGAGGTCCGCAATAGACCGCGCCAAGG 3510827 28 100.0 33 ............................ GCGTTCTTCGGGATCGGTCAGGTCGCAGTTCTC 3510888 28 100.0 33 ............................ CCTCGACACCCATCGCCTGCAATAGGTCGTGCA 3510949 28 100.0 33 ............................ CGCTTCCCGAACACGCCGGCGATCGACTTCATG 3511010 28 100.0 33 ............................ CGATCCACGTTTTCGTCGACGCCGACGATCCGA 3511071 28 100.0 33 ............................ TGGTTTGTCGGAGGCGGCGTGGCGTCAGCAGAT 3511132 28 100.0 33 ............................ GTCGGCGTATGTGCGGACACGGTGGCCAGCCGA 3511193 28 100.0 33 ............................ TCCTGACTGTCGCTGGTCCGGGGTCAAGGTTCG 3511254 28 100.0 33 ............................ GGTGATCGGTCAGCACGGACTGCCGCAGACACA 3511315 28 100.0 33 ............................ CGCGTTGAGGATCGAACCGAGGCTGCCTACGCC 3511376 28 100.0 33 ............................ TCGGAAGCGACCCACCACCCAAGCCCTCGATGA 3511437 28 100.0 33 ............................ CATCGCCTCCTGTACCGCGGCTTTGACCCCGGC 3511498 28 100.0 33 ............................ CCAACCATTGAACAACCCGGAGATGATGTCCGT 3511559 28 100.0 33 ............................ GAACAAGGGCCTGCTGAAGCAGCTGTCGCCCCG 3511620 28 100.0 34 ............................ TGAGCGCGCCGGTGATCCTGTCGAGCGTCCTCGA 3511682 27 96.4 33 ........-................... GACGGGGAACCGTCCGATGCCGACCTATTCCTC 3511742 28 100.0 33 ............................ CACGGGCGTGAACGACGTCGTCGTCCGCACCGT 3511803 28 100.0 33 ............................ TCTGATCGACAGTATCGAGTCGGGGTGGCGATA 3511864 28 100.0 33 ............................ GCAGGTCAGCGATCATCGAGGTCCTCACTTCCA 3511925 28 100.0 33 ............................ CTCCCGTTTCCGTCCCGTCGGACATCGACCGGC 3511986 28 100.0 33 ............................ CCCAGACCCGGACATCACGACACAGCACCGGTG 3512047 28 100.0 33 ............................ TTTGACGGGAACGACCCGCCGTCGCTGATCGCG 3512108 27 96.4 33 ........-................... CCAAGGTGGGCCCTGCGGCAGTATCTCTCGCTT 3512168 28 100.0 33 ............................ CGACAACGTGATCATCCACGGCACGACATCGAC 3512229 28 100.0 33 ............................ GGTTGGGTGTTGTAGTGCGCATCGGTCAATTCC 3512290 28 100.0 33 ............................ TCCAGCGCACCAGGATGCGCGGCCTCGATCTTC 3512351 28 100.0 33 ............................ ACTCCTTCCGGATCACGAACTCATCAGCATGCA 3512412 28 100.0 33 ............................ TACGGCGATCCACTGACCAGCCGCAAGCAGTGT 3512473 28 100.0 33 ............................ GCAGGCTGGTCCGTATCAGCAGGTGATCGACTC 3512534 28 100.0 33 ............................ GCCCCGGTGAGCATCCAACCCAGATACGACGGA 3512595 28 100.0 33 ............................ GTTCGATCCGTTCAAGCCGTTCCAGGACCAGTA 3512656 28 100.0 33 ............................ TCTCCTCGTCGGAGTCGGGGTTGGTGATGAACC 3512717 28 100.0 33 ............................ CGGATACCGGACTGGTAGTTGCCGAGGATCGCA 3512778 28 100.0 33 ............................ CACTGGCGCCGACCTGGCGTCGGCTACGTCGGG 3512839 28 100.0 33 ............................ CGGCTACGACCACCGCAAGCCGACCGCCAAGGG 3512900 28 100.0 33 ............................ CCGTGACAGAACAAGACCAGTAACGACTTTGTC 3512961 28 100.0 32 ............................ CCCGGGAGGCGATGCCTACCGGGGTTCCTTCG 3513021 28 100.0 33 ............................ TGTCGCGCGACTCCTTCGGGATGCCCTGCATCT 3513082 28 100.0 33 ............................ CTGTACACCGAAGCCGGGTTCGGTCCGCACGGG 3513143 28 100.0 33 ............................ CTCGGGTCTGGTGTGGACGCGCCCGGCGACCGA 3513204 28 100.0 33 ............................ CGGCTACGGCACTCACGGTGCGGGCGGTATCGG 3513265 28 100.0 33 ............................ CACGAGCACGCCGGTCGGCAGTCGTACGCGGTC 3513326 28 100.0 33 ............................ CATGGGCAGACGGTAGCGCTGGCGGGACCCCGA 3513387 28 100.0 33 ............................ CCCCGGTGCCGGCATGAGTGCCCCGGTCACCCA 3513448 28 100.0 33 ............................ GATCCGGACCATCTGCCCGATCCCCGACGCCAG 3513509 28 100.0 33 ............................ GTTGATGACGAGGCACCCGAAGTCATCCCGGAA 3513570 28 100.0 33 ............................ CTCGAGTCGCATGCTGAGCGGATCTGCGATCGC 3513631 28 100.0 33 ............................ CGGCGTCGGGAACGATTCGATCGTCCCGAACGG 3513692 28 100.0 33 ............................ GGTGTCGTACGTCGACACCTACGTCACCGACGC 3513753 28 100.0 33 ............................ CACCGGCAGCGGAGTCGTTCTCGACCTCGGTGA 3513814 28 100.0 33 ............................ TACTGGGGCCGAGTGTTGTCACCAGCCTTCATC 3513875 28 100.0 33 ............................ GCAGATCGCGGAGAGGAAGCCTGCGCCGTCGAC 3513936 28 100.0 33 ............................ CTGCGCGATCATCGGGGCAACCTGGCCTCCGAT 3513997 28 100.0 33 ............................ CAGTGGATGGGTCCGACGAGACGGCTTCGCCGC 3514058 28 100.0 33 ............................ CAGCCGCGCACTCTTGTAGGGGTTCATGCAGGT 3514119 28 100.0 33 ............................ GGCCGCGGCGTTGAACCCGAGCGGCGACTCCTC 3514180 28 100.0 33 ............................ GGCCGCGGCGTTGAACCCGAGCGGCGACTCCTC 3514241 28 100.0 33 ............................ GATGGACCCGTCGTCCATGCCGAGCGCCCTTTC 3514302 28 100.0 33 ............................ GTGTCCGCGGCGGTCGACGCGGCTGTCCCGCAG 3514363 28 96.4 33 .C.......................... CTCGGCGCGACGCTCGGGTGTCGACGGCTTCTT 3514424 28 100.0 33 ............................ CGGCATCGGCGTGATCGACGCCGGATACCGCGG 3514485 28 100.0 33 ............................ GCAGCACCAGTGAAGCTGTCGCCATCGGGCCCG 3514546 28 100.0 33 ............................ CCCGCATCCACGCCCCGCACCAGGTGATCCCAC 3514607 28 100.0 33 ............................ GAACTCGACGTTCGCTGCTCCGTAGAGGAGTTC 3514668 28 100.0 33 ............................ CCCGGCGCTAACCCTGGGTCTAACCCTTGGCCG 3514729 28 100.0 33 ............................ CACCGGCACCATCGAAGGCCGCCTCGACAGCAT 3514790 28 100.0 33 ............................ GATCATCGACGGTGCCCCGTGGTGGGTGGGCGC 3514851 28 100.0 33 ............................ CAGGGCACCGACACCGATGATCGCGTTGCGCTT 3514912 28 100.0 33 ............................ CCGGATCGTCTCATTCGGCAGGTACAGCGTCTC 3514973 28 100.0 33 ............................ CGGCTTCTCGGTCGCACCGACCCGATCGAACAC 3515034 28 100.0 33 ............................ CGAAGTCCGTCCGAGCGCGGGGGCCGTTGCTGT 3515095 28 100.0 33 ............................ CGCCGCCTGCGGGTGCAGATGGGGCAGGAACCC 3515156 28 100.0 33 ............................ CTCATTCGAATACTGCGGACGAGTGTTGTCACC 3515217 28 100.0 33 ............................ CCGCGGTGCCTCGTGGACCTCGATGCGGCGGAA 3515278 28 100.0 33 ............................ GTCGAAGTGGTATGAGGCGAATCAGGATCCGAA 3515339 28 100.0 33 ............................ CGCATTTCTGACGCGGCCATCTCAGCAACCGAC 3515400 28 100.0 33 ............................ GATGATGCAGCCGATGATGTACGTCTTGCCGAC 3515461 28 100.0 33 ............................ CTGGCCCGACTGGGTCGCGTCAGCAGCGACCGT 3515522 28 100.0 33 ............................ CCCGGAACGCGACATCCTGTTGCCGTTCGCGGT 3515583 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 99 28 99.9 33 GTGCTCCCCGCGCGAGCGGGGATGGTCC # Left flank : CGCCGGTCCGCCCGACAGGATCAGCGCGGCCGGATTCTTGGCCTTGATCTCTTCCAGCGTCGCGTCGTGCGCGATCACTTCCGAGTAGATGCGGGCCTCGCGAACGCGGCGAGCGATCAGCTGCGCGTACTGGGCTCCGAAGTCGACGACGAGTACGGGACGCGGGTGGTCGGGGGATGTTTCCGTCACGACGTGAAGTCTATCTTGCGCGCGATCGTCGCTGGTGGTCCGGACCAGCCGCGCTCAGTGGCGGTGCACGGGCTCCGACGTCGCATCGATCGCACCGCAGTGCGATCGATGCGTGGATCGACGCGCTCTGAACCAACCTCCTGCTCCGGAAAGCCGTTGCGATGCCTCTGTTAGCTCCCCTGGTTCCGCTCGACGCCGATCAACGATTCGAAACCGAAATGGGGCCGGACACCGTGGGGAATTCGCGATCGCGGTCGGCTAAAGTGATTGAAGAATCGCTTCCCGGCGTGCGAACATGCAGGTCAGGAAGT # Right flank : CCGTTGTCCATGGCCATGAGAAAGTCCCCATTGGTGGCCAGGTCGAGGTCCCCGCTGGTGGCCAGATAAAAGTCCCCACCCTGTGTTCGTCGTGTCGACCCGGAACTGAGGGCCCAGGCGATGACGGTGAAGGTGCCAACCGATCACCATCACCGCCTGGGAGTTCCATTGAAGTCTGCGAAGGACCGTATGGACATCATTTCTGCTTACCGAGAACTCGGAAGCTATCGCGCCGCAGCCGAGGTGTGCGGCACCACCCACAAGACCGTCAAGCGTGTGGTCGACCGGTTCGAGGCCGACGATCAACCACCCGACCGCAAGGAACGGGCCCGCAACTACGATGCGGTCGCCGAGTTGGTCGCTGAGCGAGTCGAGCGGTCACACGGCCGGATCACCGCCAAGCGACTGCTGCCGGTAGCACGTGCCGCGGGCTATGAGGGCTCGGCCCGCAACTTCCGTCGTCTCGTCGCCCAGGAGAAAACACAGTGGCGCCGTGACCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3518176-3522347 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025435.1 Gordonia sp. YC-JH1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 3518176 28 100.0 33 ............................ CATGAACGCTGCTCTCGGCCGCATCGGCGCGAG 3518237 28 100.0 33 ............................ CCCTGTCCGCCAAGGACTACGAGTGCCCAACCT 3518298 28 100.0 33 ............................ TAGCTTGCTCGACGGTCGGCATGTCGTAAGACG 3518359 28 100.0 33 ............................ CTGTCCAGCGCGTTGAAAGCTGACTCCGACGAT 3518420 28 100.0 33 ............................ CATGATCGCCGCGCTCGGTCGTCTCGGCGCTGC 3518481 28 100.0 33 ............................ GTCGAGCAGTGTGCGGTCGTCGTCGGTCATGCG 3518542 28 100.0 33 ............................ GGTCTTGGCGTACAGCGGCTTTCTCGCGGGGTC 3518603 28 100.0 33 ............................ CGGCGCACCACCGCCGCATGAACTTCCGGTCCC 3518664 28 100.0 33 ............................ TGCTGCTCCGGGATTCAACCGGACGGTGGGGCT 3518725 28 100.0 33 ............................ CCCTTGGCTGCGGACTCCTCGACGAACTCTGCA 3518786 28 100.0 33 ............................ CCCGGTCAGCTCGGACGGGGTGATGGTCTCGGT 3518847 28 100.0 33 ............................ GTCGTAGTCTTCGACCTCAGTTCGTATCAGCGC 3518908 28 100.0 33 ............................ CGTCGAGGTGACGGATGCGACGACCACGTCTGG 3518969 28 100.0 33 ............................ TCCTTTGACGTTCCAGTCGATCCTCACACGGAC 3519030 28 100.0 33 ............................ TAGCGGGTCGTCCGACAAGACCGCGTGGAGTGC 3519091 28 100.0 33 ............................ GCACCACACACCGAACAAGGAGAAGAACTGTGA 3519152 28 100.0 33 ............................ GTCACAGCAGATGCTGTAGATGCTGTCCCCGGC 3519213 28 100.0 33 ............................ CGATCCAACCGCTCGAGCACCTGGTCGGTACCG 3519274 28 100.0 33 ............................ GCCGGCGTTGCTGGTGTCGATGCGGATCAGGAG 3519335 28 100.0 33 ............................ CGGGTCGACCAGCTTCTCGATCGCGGACTTCTC 3519396 28 100.0 33 ............................ CATCACCGGCGATGTGGCTGGCGGGAATGTGCC 3519457 28 100.0 33 ............................ CGTCCCGCCGCCAAGATCACCTTCGGTGACCGG 3519518 28 100.0 33 ............................ CCCAGGAGTCGATCGATGCCGCCAAGTCCATGT 3519579 28 100.0 33 ............................ CTCGATGGTGATTCCGAGGTCTCGCGCGTGTCG 3519640 28 100.0 33 ............................ CGTCGCGCCGAGGATGTTCGAGCCCGAGTTGGG 3519701 28 100.0 33 ............................ GTCGGGATGCACGATCATCTCAACCTCAACCAC 3519762 28 100.0 33 ............................ CGCGCTGTGTGATGGTCTTGATAACGTTGCTGC 3519823 28 100.0 33 ............................ CTTCGCACCGCGGGTGATTCTCGGATCGAACGG 3519884 28 100.0 33 ............................ CGTGTACCCGGGCGATGGGATGCGCTTCAAGGG 3519945 28 100.0 33 ............................ CTAGCTGCGGCGTTGATCCCGTACGACTCATTG 3520006 28 100.0 33 ............................ CGTCGCGCCGAGGATGTTCGAGCCCGAGTTGGG 3520067 28 100.0 41 ............................ GTCGTCCAACTTCTCCATGCGGGTGCTCACGATCTCACTCT 3520136 28 100.0 33 ............................ CACGGTGCCCTCGAAAAGCCGTAGGCCCTCGCG 3520197 28 96.4 33 ...............T............ GGCCGAGGACCAGGCACTAGCCGAGCATCGTAA 3520258 28 100.0 33 ............................ CAACCTCAAGCCGGATTCGGCACTCTATCGGCG 3520319 27 96.4 33 ........-................... TGCGGCTGCAGGCTCTTCGACGATGGGGTCCGC 3520379 28 100.0 33 ............................ CGCGCCCTGCTCCTTCTTGGTCAGCACGGAGTC 3520440 28 100.0 33 ............................ CGGCATCTCGCCGATCTCATCGACCTTCGCGTA 3520501 28 100.0 33 ............................ GACGTGGGCGGACGGTAGTGCTGGCGGCACTCC 3520562 28 100.0 33 ............................ TCCATCGATTCCATCGTCGGACCGTAGAACGTC 3520623 28 100.0 33 ............................ CAGTTCTTCACCGATCCGTTTGTGGCCGCTGAT 3520684 28 100.0 33 ............................ CTCGGGAGGCTCGAATGTTGGCTCCTCGAAAAC 3520745 28 100.0 33 ............................ CAAGGGCAAGATCCCTTTCGATAAGCAGATCGG 3520806 28 100.0 33 ............................ CCTTTTGCCCGGACCAATCGCCGGAATTCCTCT 3520867 27 96.4 33 ........-................... CGCCAGGTACAGGCGTTTGCGGATAGCGGGAGT 3520927 28 100.0 33 ............................ TCCGTCAGCCATTGCCGCCTCCACAGAGGATGA 3520988 28 100.0 33 ............................ ACTCCGGAGCATACGGTGGTCCAGCACCATCGA 3521049 28 100.0 25 ............................ GAATGCTTGGGCGGTGGTGCGTATC Deletion [3521102] 3521102 28 100.0 33 ............................ GCAAGTGATCGATCGCGCCAAGTCCATGATCGG 3521163 28 100.0 33 ............................ CTCGTCCCCGCGCCAGGCCACGGCTCCGGATCG 3521224 28 100.0 33 ............................ CAGCGCGAAATTCAGGCTGTCGCCGCTCTTGCG 3521285 28 100.0 33 ............................ CTTGCGGAGCAGCCACAGCATGGTGGCCTGCTC 3521346 28 100.0 33 ............................ CGGCATAGGAAACGGTTTTCGCTGAGTGACTTA 3521407 28 100.0 33 ............................ GTTCTCGGAGTGGTGCTTCACCAAGCGGTACGT 3521468 28 100.0 33 ............................ CTCTTCTTTGCACTCGACGCACTCGACGTTGGT 3521529 28 100.0 33 ............................ GTCCTTGAACGAGACCTTCCCCTTCGACACCAT 3521590 28 100.0 33 ............................ CAACCATCCTGTTTAAGCATTACGTCATTACCG 3521651 28 100.0 32 ............................ CCCCTGGAAGGAGCCCCATCATGTACCTCGCC 3521711 28 100.0 33 ............................ CCGGACGGTGGGGCTCAGTGCGGTAGCGATGCG 3521772 28 96.4 33 ..................C......... TCGGAGGCGGTGTGCGCTTCAGCCTTCGCGATG 3521833 28 96.4 33 ..T......................... CACGACACAGACATCCGACGCACACGGCCCGAT 3521894 28 100.0 33 ............................ CAAGCGCGGCAGCGACGGCGACAACGGCCGCAT 3521955 28 100.0 33 ............................ CCCGTTGAGGACCACGAGCGCGACCTGTGTCGG 3522016 28 100.0 33 ............................ CACTGCTTCTGCGATGCGCGCATCTCGAGGCTC 3522077 28 100.0 33 ............................ CTTCGGAACCACCGTCAAGGCGGCGTATCAAGT 3522138 28 100.0 33 ............................ CGGAATCATGATGCTTAACCATGATCAAGCCAT 3522199 28 100.0 33 ............................ CTTCGCGTTGCCGATCCAGGTCGGTCCTCGCGG 3522260 28 100.0 33 ............................ CGAGACAACGTTCTCGTCTGCAACAACCTGGTC 3522321 27 92.9 0 .....-...................C.. | ========== ====== ====== ====== ============================ ========================================= ================== 69 28 99.6 33 GTGCTCCCCGCGCGAGCGGGGATGGTCC # Left flank : ATCGGGTTGGGGATCGCCGCAGTGCACGCCGGACACAAAGTGCGGTACTTCACCGCCGCCGACCTCGTGGAGACCCTGTATCGCGGGCTGGCCGACAACACCGTCGGCAGAACCATCGACACCCTGCTGCGCCAAGATCTGCTCATCCTTGACGAGATCGGATTCGCCCCGCTCGACGACACCGGCACCCAACTGCTGTTCCGGCTCGTCGCCGGCGCCTACGAACGCCGCTCTCTCGCGATCGCCAGTCACTGGCCCTTCGAACAATGGGGACGCTTCCTGCCCGAACACACCACCGCCGCCAGCATCCTCGACCGGCTCCTGCACCACGCCACCATCGTCATCACCGACGGCGACTCCTACCGCATGACACACCGAACGGAGGTACCACCCACCTAAAACATCCCGCACAGGGTGGGGACTTTTACCTGGCCACCAGCGGGGACATCAAACTGGCCGTTGACACCCGTCAACCTCCTTAACCTCTTGAAGGCGAATCC # Right flank : CGGCCTGCGCCGGGTCGGTCTCTATCAGGTCATCGATCTCTGCCTCGATCGACGCGAGCGTCACCCACGGCGACGAGATGTAGACCTCCTCGAGGATCTTCCGTCGGTAACCAAGCTCTGCCGTACGTGCCGGAGGGTGTGAGTGTCGAGTACCTCGAGCTCCGCAAGGATTGTCGTTCGCGTCGGTGTCCGCGCATCACGGATCGCCTGCGCGCCGGCCTTCGTGAACAGCCGATCCTGCTGCGCGCGCGAGAGCCCGTCGAAATGCACGCGGGCATCGAGGGCGGATCACGAAGGCCGAAGCCGAGGCGATCCGAAACTCACGCGGAGGACGAGCTCGGGCGCGGTCGGTGATGCCGGATGCGATCTATCGGGCCGCGGGCGGCGATCGCGACCTTGCGGTGGAACTGCTGCATCAGCACGGGTACATGATGGACCGGCCAGGCAGGTCTCGCACCGTTCGCGGTGGCGCGGAAATGACTCGACCGAAGGCAGCGCGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3533821-3536043 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025435.1 Gordonia sp. YC-JH1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3533821 28 100.0 33 ............................ CAAGGGACAGATGACACCGCTGGTGATGGGGAC 3533882 28 100.0 33 ............................ CTCCCGTAGTGCTGCACGTGGATACGGTCCCCG 3533943 28 100.0 34 ............................ ATCCGGAAGACCGGAGGCGCGAGCAAACAGCTTC 3534005 28 100.0 33 ............................ GGGCCAGGCCCCGGAATGCCCGGGGGCCTGGCC 3534066 28 100.0 33 ............................ CGTTGCCCGCGCATCAGTCTGGTGATCTCATCC 3534127 28 100.0 33 ............................ TGGGATGCGGACCATGCCAAGTGGGAGAAGTCG 3534188 28 100.0 33 ............................ GGCGTACGACGCCAAGATCGCCGCTCTGTCCGC 3534249 28 100.0 33 ............................ CTGAAAGCAGTGCCCGCATCCATCGGCTTCGCG 3534310 28 100.0 33 ............................ CGGCAGCGTCATAGATATGCCTCCAAATCGTCT 3534371 28 100.0 33 ............................ CGGCATGGAGCTGCCCGCCGGGTCATACGTGCT 3534432 28 100.0 33 ............................ GTGTGGACCGTGCTGGTCCGCACTACCTCCTAC 3534493 28 100.0 32 ............................ TGCTCACGCCCATACAGGGTCTCTGTGGGTCG 3534553 28 100.0 33 ............................ GACGAGCGGATCGACACGTCTCGTCCCGATGGT 3534614 28 100.0 33 ............................ CTCACCGATCTGCGCCGCCGGCACCCCGGCTTT 3534675 28 100.0 33 ............................ CTCCCAGCCGACGTTCGCCAGCCGCGTGCTCGG 3534736 28 100.0 33 ............................ CGTCGCCGACGTCGAACTGACAGTCTCACCGAA 3534797 28 100.0 33 ............................ CCTCGGTCCTCCCCAGCCGGCCACCGATCCCCG 3534858 28 100.0 33 ............................ CTCGGGCTGTCGGTCACGCGGTACTGGCAGAGG 3534919 28 100.0 33 ............................ GGTGGCACGCACCGACTGCGGCAGCGGGAACAG 3534980 28 100.0 33 ............................ CACGGACGACTGGCAGACATGGTCGACGGGCAA 3535041 28 100.0 33 ............................ CTGGGTCGCCGTCGCATTGACGGCAGTCCTCAT 3535102 28 100.0 33 ............................ CGCCGCATGATCATGCAACACCGGCCTCCATTC 3535163 28 100.0 33 ............................ TGTGTCGTCGGTTGGTACGCCGAAGATCACCAC 3535224 28 100.0 33 ............................ TTCGAATCGGCGTGCGCCGCCTGCACCTTCATC 3535285 28 100.0 33 ............................ CGGCGTCAGGCGTCGTTCGGTGCGGCGTGGCTT 3535346 28 100.0 33 ............................ TTGCCCGCGGTGCCTCCCGACGCGAGCGGCGTC 3535407 28 100.0 33 ............................ CGAATCATGAGGTCGATGCGCGCCAACCGCGAG 3535468 28 100.0 33 ............................ CCGTGGACGGCCCGCTCGATTGGATCAGACCGG 3535529 28 100.0 33 ............................ CAAGCTCGCGCCGACTGCGAGCAAGTACACCGC 3535590 28 100.0 33 ............................ CGACAGCATCCGGTGGATCCGGCGGTTCCACCA 3535651 28 100.0 33 ............................ CTCCCATGCGTCGGACGTAGACATGTAGGGCTG 3535712 28 100.0 33 ............................ CTTCAGCAGCGCTCGCCGAGGTCGGTTCGAGCA 3535773 28 100.0 33 ............................ CGCCCCCGGAGGCTTTTCTGGCGTACCTACTGC 3535834 28 100.0 33 ............................ CCGCGTCGAGCGATCCTCCGCATCGGCATGTTG 3535895 28 96.4 33 .........A.................. CGGGGCCAGGTCACTATCGGTGCGGTCGATCCA 3535956 27 96.4 34 .................-.......... CATCTGCAGGTAGTCGTTCTTCTGGACCCCGTGC 3536017 27 96.4 0 .................-.......... | ========== ====== ====== ====== ============================ ================================== ================== 37 28 99.7 33 GTGCTCCCCGCGCGAGCGGGGATGGTCC # Left flank : ACCGGCAGGGGAATGTCGTCGGCGGCACCAACTTCGCGCCCGAGGATATGGAACCGCCGTGGTAGTCGTCGTGCTCACGAGTTGCCCGCCGAAGCTGCGCGGTCATCTGACGCGGTGGTTGCTCGAGGTGAGTGCGGGGGTATACGTCGGTCACGTGCCCGCGCGAGTCAGGGACCTCTTGTGGTCGCAGATCATCGAGTACGTGAGCAACGGCAAGGCCATCATGGTGCACAGTTCAGATGGAGAACAACGGCTTGCGTTCAGAACTCACCTCCATGAATGGGAGCCCGTCGACCTGGATGGAATCACCCTGATCCGCCGCCCGACCGACAATGCGACCACGCGCGGCCGCGTCCGCAAAGGATGGAGCACAGCGTCGCAGATGCGGCGGCGTCGACGCGGGTAGACGCACATCAGCGCTCCGCGCGCATTCCGCAGCACGACCGCGCAAAGTGATTCCAGAACAACTTCTCGAGTTACGTAGTCGCTGTTCAAGAAGT # Right flank : CCGTCAGAGCGGCACCGTGACGCCACGTCGACTCGGTCGCGAACTCCTCGATGTCCGCCCGACGAGGATGGTCCACCCGCCACCCCACCCGTTTTCGTTCCCGCGCCACGCTCCCGCCCAGCCCGCAATAGGTATCTGTGCCACCCGCCAAATACCCTTGACCCTGTGACGCACCTTTCCTCCGACACCGAAGGCCGCCGCTCGCGCTGGTCGCTGACCATCGCCGACCTGGCTCAGGCCGCCGTCTTCGCCGCGCTCATCGCGGTCCTCGGCCTCCCCGGGCAGATCAATCTCGCAGGCGGAGTCCCGATCACGCTGCAGACGCTCGGCGTGATGCTGGCGGGGGCGGTACTCGGACCGAAGAAGGGCACGCTCGCGGTCGTCATCTTCATGGTGCTGGCCATCGCCGGGCTGCCGATCCTGGCGGGCGGACGCACCGGCATGGTGGCGCTCGGCTCCCCGACCGCAGGCTACTTCGTCGGCTTCCTGCCCGCGGTGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //