Array 1 41422-43821 **** Predicted by CRISPRDetect 2.4 *** >NC_016630.1 Filifactor alocis ATCC 35896, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =========================================== ================== 41422 32 100.0 35 ................................ ATAACCTCACCGAATCCATCAATCAAAGAGGATTG 41489 32 100.0 35 ................................ GTTTGAATCTGCTATGAAAAGCCTAACTGATTGCA 41556 32 100.0 35 ................................ TTTTTTACATTTTTTACATTTTACATATACTTTTT 41623 32 100.0 38 ................................ CACCAATGCAACTCCTCGATGTTTAAGTCTATCCCGTA 41693 32 100.0 36 ................................ AAATAAAATTGATACTCTAAAATCGCTTGAGATTGG 41761 32 100.0 36 ................................ TTGAGACGATTGAAAACCTAAACGGACAGCCTGCAT 41829 32 100.0 35 ................................ GTTTTCTGTTCCAGTAATCTTATATCCAAATTTCC 41896 32 100.0 36 ................................ CAGATCAATCAGCTATTTTGACAAAATAGTATATGG 41964 32 100.0 34 ................................ TTTTATTGCACCTCTCTTCCAGTGTATCAAGTCT 42030 32 100.0 36 ................................ CAATTTATGAATTCTATCGGGATTCGGAAAATCAAA 42098 32 100.0 33 ................................ CGGTAATATTCAAAGAAACACCCTGAAATGTAT 42163 32 100.0 33 ................................ TTTATATCTATCCTGATCGTCTACTCTCGAGTG 42228 32 100.0 37 ................................ GTTCATAAATCACCTCTTAATATAAAATATGAGCAAC 42297 32 100.0 35 ................................ CTGTTAAAACAATTGATTCTTCAATATTTCCATCG 42364 32 100.0 36 ................................ AATAACATTGTCTTCGATATCCGCCAACGTAATATC 42432 32 100.0 36 ................................ CAAATTGACCGTATCATTGCGGGATTTGGTGGAATT 42500 32 100.0 33 ................................ TACCATAGAGTTCGGATACTGTGAGAGTGAGAG 42565 32 100.0 39 ................................ TTTTAGCGGATAACATATTGACTTCTTCATACATCTGCC 42636 32 100.0 32 ................................ TTACAATCATACTTGCGTTATCAGGCATATAC 42700 32 100.0 34 ................................ TTAATCATCGCTAAATTCCATAACTCTACTGTAG 42766 32 100.0 36 ................................ CATACACCAAAAAGGTTTTGCCGTCTAAAATATATA 42834 32 100.0 34 ................................ CGGAGTACTGTCCTGCTTTACCTGCTTGGCCTAA 42900 32 100.0 43 ................................ GCTTATCAACAATCAAGAGGTGGACGAAGAGGTGGCGGTGGAC 42975 32 100.0 35 ................................ AAATCCTCTCCGTTTCCCAGCAACTGAAAAAGCTT 43042 32 100.0 38 ................................ TTTGCCTCTGCTAAAGTTACTGGCATAATAAATCATCC 43112 32 100.0 35 ................................ GTTGCGTCTTGCAAGTTCGTTGATAGCTTCCTCGT 43179 32 100.0 37 ................................ ACTTATTGCTGTTTTATCCATTGTGTCTGATTTTTGA 43248 32 100.0 36 ................................ TGTTGATATGTCAGATGTCGGAAGTAATACAACAAA 43316 32 100.0 38 ................................ AGCAAATTCTTAGCCGGAACGTATATTAATATGGCAAC 43386 32 100.0 38 ................................ GCAATACACCCATGAAAGTTTTGTTGCCGGAACGGTAT 43456 32 93.8 33 ...........T............G....... TTTTTTACAAAACGTATTAAATCTATCACTTTC 43521 32 93.8 35 ...........T............G....... ATTTGTTTTTATGTCATTTGTAGTTTTAACATTAA 43588 32 100.0 34 ................................ CGTTCGTGCAACGGCTAAAGGGTTTGCGGTCGGT 43654 32 100.0 35 ................................ TTCTCTTACAATTTCCAGTTCAGATTTTGGAATTT 43721 32 100.0 36 ................................ TTATGAAAGATAGAAAAAGGGGTTTTGAAAAAATGT 43789 32 87.5 0 ...AT......T......A............. | T [43814] ========== ====== ====== ====== ================================ =========================================== ================== 36 32 99.3 36 GTCGCGTCCCACAGGGGCGCGTGGATTGAAAT # Left flank : TCTTGAGTCATATCCGCCATTTATCATAAAGGAGTAGCAAATGTTAGTGATTATTGCTTATGATGTTGAAACTTCTACACAAGAAGGAAGAACAAGGTTGAGAAAAGTTGCAAAACTTTGTGTGAATTATGGGCAAAGAGTCCAGAATTCAGTGTTTGAGTGTAGTGTTGATCCGGCACAATTGGTCAAAATCAAACATCAACTTGAGAAAATGATTGATCCCGATTCAGATAATATAAGAATATATCATATGGGAAAAAATTGGGAAAGAAAGATAGAAACCTTAGGGAAAAGTGAATCCTATAATCCTGATAGCGGGGTTCTGTTTGTTTAGAATGCATCAGTGTAATGAATAAGATTATTTAGAGAACCTGTGTTACACATTTTTTGATATAGGATTCAAGTAAAAAGTAATAGAAAAAGAGTTTTTTTTCACTATTGATTGAATCAAAATTGTTGTTAAAAATATATAGCCGTAATAAATGATACAATATATTGCG # Right flank : TATCATTAACTATGATGTAAAATATTGTTTATGAATAAAAGCACAGGGAAGAAGATGAGATGTTTGGTTAGAATATGGTATTTTTTGGGCCTACCTTCCAAAAAGAAAGAGAGTTGTGATTGATGAGAAAAACAGAATTTCGATGTAATAAGTATTCGCCGGGCGTATTGTATATGATGGTAATAGTAGGAGTTGCAACGGGGCTGTTGCTTTTTTACGGATTTCTTGTTGTTTCGGGCATCAACAAAGGTCCGTACGATGGACCGATATACTTCCAAGACAACCCAAGACATGCAATTTATTTGATATTCTCTTTGATTCCGATTGCGATGGGATTGCCGGCATGGATTGCCAAAAAATATTGGAGCAGTAAAGAGGAAGAAGGACAGCTTGAACTGTATGATGAGTATGCTGTGTTGTATTGGAAAAACAAAGAATTCAAAATTGAAAAGGGAGAATTACAGATAAAGATTCCGGAGCCACAAGCTATTTGGTATTCC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCCACAGGGGCGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 472221-473908 **** Predicted by CRISPRDetect 2.4 *** >NC_016630.1 Filifactor alocis ATCC 35896, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 472221 36 100.0 30 .................................... AACAGCACAGGCGGAAGCGTTGAAGAGTTA 472287 36 100.0 30 .................................... CATCACTCAAATTCTTAGCTTTATGTTCAA 472353 36 100.0 31 .................................... GGTTATGTTTTTAGGCATCTACTTTTGATTG 472420 36 100.0 31 .................................... CCATTTTAGTAGGATTATCTTTTAAACTACA 472487 36 100.0 30 .................................... GGTGGATGTCGTTGCCTAAATTACCGAAAT 472553 36 100.0 30 .................................... AACCGCTAAATATTTTACGATTATACATCA 472619 36 100.0 30 .................................... AACCGCTAAATATTTTACGATTATACATCA 472685 36 100.0 30 .................................... TTCGTCTGTTCATCACATTTTAGAAAGCTT 472751 36 100.0 30 .................................... GAAAGATTAGAATATCTGACACAACATTTT 472817 36 100.0 30 .................................... ATTCCACAAGTCTGGCGGTGCAAAGGTGCA 472883 36 100.0 30 .................................... TGCGTTCCTGCTGCAATCCCTAATACGAAT 472949 36 100.0 30 .................................... ATGAAATAGGGGTATCGGTTCAAGAGCAAA 473015 36 100.0 30 .................................... TTGCCACAGGAGATTAGACCAAACCACAGA 473081 36 100.0 30 .................................... AACTACACCCGTATGATTAAAAGTAAAAGG 473147 36 100.0 30 .................................... ATTGGGAAAAGAATTAATAAACCAACCAAA 473213 36 100.0 30 .................................... ACATAATAAAAGACTTGCTTGAAATCGTGG 473279 36 100.0 30 .................................... TTACAATTCCATCTTTGTTAGAATCATATT 473345 36 100.0 30 .................................... AAAAGAAAGCTTGTCCGTCATAGCATTTGT 473411 36 100.0 30 .................................... AAAAGAAAGCTTGTCCGTCATAGCATTTGT 473477 36 100.0 30 .................................... TACTTGATGAGCCCACTCCAGCTGCATTGG 473543 36 100.0 30 .................................... AATATCGATTGACTTCCGCTTCTTACCAAT 473609 36 100.0 30 .................................... GACAAGGAGTTGCGTTAAATATTACTGGAA 473675 36 100.0 30 .................................... AAAAGAAAGCTTGTCCGTCATAGCATTTGT 473741 36 100.0 30 .................................... AAAAGAAAGCTTGTCCGTCATAGCATTTGT 473807 36 100.0 30 .................................... CATCATCCGCTCCGGCATAACCGCCGATTT 473873 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 26 36 100.0 30 GTTTGACTACCATATGAAATTACACTACTCTCAAAC # Left flank : ATCTTTTGTATAAAAATAAACATTAGCCACATATTCCCTAATACAACCCACTTTTTCATCAATAAAGCCTGTATTCAAAGGTTTAAATATTTCTTTTCCACGAAATACAAAAGACATAAATTTTACTTGAAAATTTGAATCTTTTTTTGCCATGATAATTCGCCTATATTCCTTTCTGAACTGAACTATAATAGATGAATACACCATCATCACAAACTTACCCAGCTATCCTGTAACAATGCAACTACAGAAAAATAGATATCATCTGATGTCTAATATAACTTGCAATAGATATTGATAATTTTTTGAGAACAAATTGATAAACCACTATGACTTTGTCAAAAAGTTAAAAGTTATTAGAAAAGAAAGTCTAACATCCTACTCATCCAACTTCTCTCTATATTCTATGTAAAATAAGTTAATATGATGCATAACATTACAAAAATTTTTATATTCCACTACTCTCAAACAAAATTTATGACGCATATGATTATTTTTAT # Right flank : CTCAATTTGAAAATAAACGCCACTACTACGCCCGTATTACATATGGTAGTTTCTTTATATTTCACATAAATCTATATCTATTATAGTTTGTTTCTTAGGACTTTCCAAGTCAATTTGATGACTTTCCACAAACAAAAATAATATTTTTTGTGAGAATTGATGTTGCCTCAAATATTCGAAATCTATCTTTGTTAAAAAGCCTGAACATCCTACCAAAATAAAGATATTCTTATGTAATAATTCAAACATTGTTTTGCTATAATCAATCAACCGTTCAACAAATCGTCCTTCTTCCTCTTTCAACCGGATATCCATCAGTTTCAAAATATCCTCTACTTCAACATAATCAAGATACTCTATATCATATTCCAACTCTAAATATATTTTAGAACATAAAGACACAAGGCTACCGGAAATATCAATAAAGTCTTCTGCCAAATAGGAATCTTGAACCTTTTCTAAAACATACTCCAGTAGTTTTTTCTGAATTTCCTTTGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGACTACCATATGAAATTACACTACTCTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //