Array 1 156596-159176 **** Predicted by CRISPRDetect 2.4 *** >NC_007776.1 Synechococcus sp. JA-2-3B'a(2-13), complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 156596 36 100.0 36 .................................... GCTTACGTGGCGTGGCATAGAAGTACAACTCATCAG 156668 36 100.0 41 .................................... GCTTTTATTGCAGCGTGTGAGAATAGCAGGTATCATGGTAA 156745 36 100.0 39 .................................... CCCTGGCCAGAGCTATCGAGTTCACCCGCTGGCTGCAGA 156820 36 100.0 36 .................................... TTGCCGGGGAAAATGTAGGCGAACGCCATCAGGGCC 156892 36 100.0 39 .................................... TTTTGGGCTCTCGGGTAATCATGACTACCCCGTCTAACT 156967 36 100.0 40 .................................... TTTACCAATAGTACCTACTGGTCTAGATTGTTTACCCCAA 157043 36 100.0 36 .................................... GCTATCCAGCAAAGTTACCAGTTTCTCCATTTCTTC 157115 36 100.0 37 .................................... AAGATCTGCTTCTCTGCACCACTAGCTCGCTTGGCTG 157188 36 100.0 39 .................................... TCATTGTTTCCCCCTTTCATGCGTGCGTGTGGATAAGTT 157263 36 100.0 43 .................................... GCCCAATATAAATGCCTCTGCTAAAGCCCTCGACTTTGCCATT 157342 36 100.0 40 .................................... AGATGGTGGTGAACCTTGCATGGATCCGCAGTGAGGTTAA 157418 36 100.0 38 .................................... TTGGCAATTAGCAAGTGAACCAATTCAGGATGAACATC 157492 36 100.0 40 .................................... TACCAAACTATCGGAAGAGGGGAGGGATGGCAGTAGTTAG 157568 36 100.0 35 .................................... AGAACTACCTCTGGACTAGCTTCTTTGGTTGCTTT 157639 36 94.4 38 ...........................G.C...... CAGAAGACGAAGTCTAGAAACAAAACGAGAGGAGTGTA 157713 36 100.0 37 .................................... TCTTGGTACTCGATCTCGGCCCCTTCTAGCCCATCTG 157786 36 100.0 45 .................................... CTTTCTCCGAATGTCCTTTCGGACTTGCGCGTTAAAGCGCTTACG 157867 36 100.0 36 .................................... TGTCTCTGAAATGTTGAAGAATCAGAGACTTTCCAG 157939 36 100.0 39 .................................... AAGGAACCGTCGAAGCCGGCGAACATCTCGATTTCGTCC 158014 36 100.0 41 .................................... CCCTCTTGAACGGTCTGCGAGCTGCCGCTCGTGTGGAGAGC 158091 36 100.0 47 .................................... AGGTGAACTGGTCTTTTTCTCTCACCTTGTAGGTGAGGTTGCTTGTT 158174 36 97.2 37 ..C................................. GTTGCATTCTTGATTGGTCCCAGAGGAGTATCCTGCC 158247 36 100.0 42 .................................... TACGTTGAATCTCAGGACGTTGAAACTCTTTACATATACGAT 158325 36 100.0 40 .................................... TTTGACACTAAACACTCGCGGATAAACCGCATGGCCTGCA 158401 36 100.0 39 .................................... AAGGGAGGAGTCTGTTATGAACGTTATGAAGTTTATCGG 158476 36 100.0 43 .................................... ACGCGCACGGCGTTTTGCACGATGCGTAAGCATAACCAACCTC 158555 36 100.0 37 .................................... TGCCGAACACGGCCTGGTAGCAGTTTTCTGCTACTTC 158628 36 100.0 37 .................................... TTCCCTCAGGCTATTGCTAACCAGACGTGCCCGAACA 158701 36 100.0 37 .................................... AGCATCTAGCCAGCTCACTTTTGCGAGTATCCGGGCA 158774 36 100.0 33 .................................... TAAGCTTCTTGGTCCCTGGATCTACTACTCCAA 158843 36 100.0 41 .................................... AATCCAGATAATTTCGTTATTCTCGTTGATTGCATACAACG 158920 36 100.0 39 .................................... AACCAGTCCTGGCATTCGCAGGTGAACTGGTCTTTTTCC 158995 36 100.0 37 .................................... ACCAAAAGCTCCCTGGCACTTTGCCGGCGAAACTCGA 159068 36 100.0 37 .................................... CGCAACTCCAAGACAATCTCATACAGGTCATCGTAAA 159141 36 97.2 0 ....T............................... | ========== ====== ====== ====== ==================================== =============================================== ================== 35 36 99.7 39 GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Left flank : CAGCCGCATCACCTCGGAAACCCAGCGCTGGAACTTGACCATCCAAGAGCTGGACGGGATCCGCAGCAGCCTGGATCAGTCGGCCAACCGCCTTTCCTACAGCATTGTGGTCGGCTCTCTGATCGTCGGAGCTGCCATCATCTCGGCTCAGACGCAGCGGTTTCAGGTCTTTTGGCTGAGCGAACTCCTGTTCGGGGCGGCCAGCCTGTTGGGGCTGTGGCTCGTCATCAGCATCCTGCGCTCCGGTCGCCTGCGTGGCTAGATCCCTCACTCGGATCCCAATGTTTCCAAAAGAACACCAAAACGGTATCAACGCCTCTGCGAGCGTCCCTGAAAATCCCGGAAAAGCTCATTCTTTCGTCGGATCCCTCGATGCCTTGCGCCACAAGGCTTTCCGGCTACAAAACCCCCTCGCCAAAACTCTCTTTGCCCCCTTTTTTCCGGATCCCTCGCAAACGGGTCTTGCATCCCTTGTCCTGCTTGGCTTTAATAGGGGTAGA # Right flank : CAACTTGTTGGATCCCTTGCCACCTTGGGGTGTATTTGTTGAGTCAGTTTCCCTGCAGTGAGGGATCCCTAGGGATGGGGAAAGGACTCAACAGCTTGCGCTGGCTGGCGCGTCAGTATGCGCTTCGAGTTCTGGATGCTGCCGGTATAACCCTCAATGGCTCGCAACCTTGGGATATTCAAGTTCACGACGAGCGGCTATATCTGCGCTGCCTGCTCTATGGATCCCTGGGCTTTGGCGAGGCCTACATGGAGGGCTGGTGGGATTGCGAGGCCATTGATGAGTTAGTTTGTCGTCTCCTAACTGCCCAGGCACCGCAGCAGGTGGGTTGGCTAACTCAGCCCTTGCTTGGGTTGGACAGTTGCCTTATCAACCGCCAGCGGGGCAAGGGGGCATTCGTCATTGGCCAGCGCCACTACGACATTGGCAACGATCTCTATGAGGACATGCTGGATCGCCGCATGATCTACAGCTGTGCCTATTGGGATGGGGGCGCGCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 516592-515271 **** Predicted by CRISPRDetect 2.4 *** >NC_007776.1 Synechococcus sp. JA-2-3B'a(2-13), complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 516591 36 100.0 45 .................................... ACCTTCTAGCCCAGTTTTGGGGTGATCTGGAGATTCAGGAGGTTT 516510 36 100.0 37 .................................... TTGATGACCGGTTCCTTCATATAGCCCTCCCTTTAAT 516437 36 100.0 36 .................................... AAAAAGAAAGTCGGCTATTACTGGATGATTCCTCCC 516365 36 100.0 40 .................................... CTGAAAAAGTTCGTTGCTACATTGACGGTAACAAACATCT 516289 36 100.0 42 .................................... TGATGGTTTTTATGTCTTCCTCCGTTGCCTGTTCTAGCCCGA 516211 36 100.0 38 .................................... GCCAAAATGGGCGGCTTTTGTGTACGCACGAGGGTAGC 516137 36 100.0 42 .................................... CCCACTCCCCCGGGAATTGCTTCCCATGTGAGGTTGTCGAGC 516059 36 100.0 40 .................................... TTCGCCGCACGAATTTGCTCGCGCTGGATATCAGTGAGCT 515983 36 100.0 36 .................................... CATAGTTTCCTCCTAAGGCAGGGAAAGACTGAACCT 515911 36 100.0 44 .................................... CCCCGAATAAGGACTATAGCGGTATTCGGTTGACTCAGACGGAG 515831 36 100.0 44 .................................... CGGGAGTCGGTGTTGCGTGAGCTGACCGTATGGTCAGTGAAGGA 515751 36 100.0 38 .................................... CCAAAACTACGTTGCCAGAGCATGACACTGGCATTCCA 515677 36 100.0 37 .................................... TCTAGTCAATCCGTTTTGCGGATTTTGCTGGATCCAA 515604 36 100.0 36 .................................... CTTACACGGCGGTGTCCGTATATCCAGTAGTATGTA 515532 36 100.0 40 .................................... ATCATTCGTGCCGAGAGATGCGCGCTTTTGCGGGATCTTG 515456 36 100.0 39 .................................... GCAGTACGGCTGCAACCCCGAGGTAGTTTTAGGACATAC 515381 36 100.0 39 .................................... GCAGTACGGCTGCAACCCCGAGGTAGTTTTAGGACATAC 515306 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================= ================== 18 36 100.0 40 GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Left flank : CGGTGAGGATGTCGGGATCGATGTATTCTGACCAGATGTAGAGATTGAGGGTCTGCCTCTGGGCAGAGGTAACATGGGGCCAAAACAAAACCAGGACAAGCACACAGCAGAGCAGGGTTGTAGCCGAGGCAATCCACTTTTTCATGAGATTTCTCCGACTGTGAAAAGTTGAAAACATCGTATCTGCTTTCATCCCCCAGCCGGCTACACCCGCGGCTAGGGGGCACGCCTTGGGCAATCGCCAAGCCCCGCAAACTCCGGTTGAGGCTCGGGTACTCACCCTTGTTTCCAAGACAACACCCAAACGGTATCAACGCCTCCGCGAGCGATCCGCCAAAAGCCGCAAAGGCCGATTCTTTCGTCGGATCCCTCGATGCCTTGCGCCACAAGGCTTTCCAGCCCCAAAACCCCCTCGCCACAGCTCTTTTTGCCGACTTTTTTCCGGATCCCTCGCAAATGGGTCTTGCATTCCTTGCCCTGCTTGGGTTTAATAGGGGTGG # Right flank : AATTCCGCCACCGATCCTGGCTATACTGAGGACACGCTCACCCAAAGTAGGGGTGAGCTTTCACTCGGCAGCGATTCACATGAGTTTTTGGAAGGGCCTGTTCGGGTCAGCAGGAGCTGCTACAACCAAAGAGCCGGCGCAAACAGCTGGGGCCGACCGTCGCCAGGAAACGGTGGTGGTACGAGGGGAGACAATCCTCTTCAGCTTGGATCCCAACTTGGATCTGTACGAGCTAGAGGAGCTCTGCGATGCGGTGGGGTGGTCGCGTCGCCCCATTCACAAGGTGAGAAAAGCCCTGCAGCACAGCTTTTTGGTGGTGTCGATGTGGCAGCAGCGGGGCAGCTACCGTCGCCTCATCGGCTTTGCCCGGGCAACGTCCGACCACGCTTTCAATGCCACCATTTGGGATGTGGTGGTTCATCCCGATTTCCAGGGTAGGGGTCTGGGCAAGCGGCTGATGGAAAAGGTGATCCACGAGCTGCGCGCCCGAGACATCAGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 605268-604640 **** Predicted by CRISPRDetect 2.4 *** >NC_007776.1 Synechococcus sp. JA-2-3B'a(2-13), complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 605267 37 100.0 35 ..................................... GCCCAGTCGAAATGGGGAAAACCATCGACGATGTT 605195 37 100.0 36 ..................................... GCTGAATAGAGTCTCTCCCACCCGGTTTCCCGGATG 605122 37 100.0 34 ..................................... CCCCATTTGATCGTTGCGCCTTCGGGAATGTCGT 605051 37 100.0 36 ..................................... GAAAGACTCCGATTCGGATCCAAAATTAGTCTCGTT 604978 37 100.0 37 ..................................... AGTCATAGAAGTCTATGACCAGGCCATCCTTAACCAA 604904 37 100.0 43 ..................................... TTGTGCTTAGAACGGTAGGAGCAGTCCTTGCTCGTCAAGGCTT 604824 37 100.0 39 ..................................... CATAGTAGTGAGGAATATCGCAGTCAATTCGCTCGTATT 604748 37 100.0 35 ..................................... TAGAGAGAAGCGAGTAATGAGCAAAGAGAAGTGAG 604676 37 70.3 0 .......T.......C....T.....A.C.T.CCTCT | ========== ====== ====== ====== ===================================== =========================================== ================== 9 37 96.7 37 GTTGATCCCTACCTTTTCCCCGCAAGGGGACGGAAAC # Left flank : TGCAGACCTGCTGGGCCAAGTTACTGGACAAGCCGAACCGGGCCCGGATTTCGCGGTAGCACAGAGACTGGAGCTTAACGGCGTTGGCGACTTTCTCCGGCGTGTTCTGGTTGACCCAGTTCAAGGCTTGGCCAAAAGCCTCCATCGTCGCGTCCAATTTGGCGGCTTGCGACTGGGACACCTTGAGCTTGCAGGAGACGGTCAGGACTTGGGTCATGGTTCTATCATAACTTCCGCATTCCTCCCGACCCTCGTCCTACGGACAGAGGGCGGGGCTCCTGCGATTTCTAGCTGACTCTGCCGGCACAAGATTTTAAGGGAAACTTTAGATCTTTTGCCCCGATTGGCCCAAAAACGTGACATAATGGCCGTAGCAAGCTCAATTTCCCCGCTTGCGCTTGGCCGCGAGGACAATGTTAACATCTGTGTCGAGGAATCTCCGTACTCCCTCGCGAACGCACCTTGAAAACCTCATGAATTCAGGCTTTTCCGAGGGTAGG # Right flank : AACCCCCAAAACCCTGAACTTTGCTGAATTTACTGAGCTTTAGGCGGTTTGGCAAAAGTCATTGAGAGGGATATAGTAGACCAAGTTTCCCCCTGATCCTTGAGTCCACCGCAACGGTTGCCGGGAAGTGAAGGGGGAAAGCGCTCGGGGGGTATTCCTCAGGGCTTTGCGGGATACCGCCTTCCTGCTCAGAGATAGGCAGGATGCGATCGCTTCTTTCCTGAACCATGTTCAGGAGAGTTCAGCGTGAATGTATCAGGCTCAACAAAGTACCTCAAGTCATCTAGGGAAGACTGCTCGACGAGTAGTCCTGGGATCCAGACTGGAGAGAGCGGCGGGCCAGCTTGGCATAGGTCTTCACCGTCTCGTAGGGCATCTCCAAATCAGCGGCGATCTGTTGTAAGCTCTCTCCACCTTCGCGGCGGGCCAGGATCGTCGCCCACAGTTGGGCAGTTTTTTCGGCGCGGGATCCCCCTTGTCGTTGCCGCTGGCTGAGAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATCCCTACCTTTTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 867186-866038 **** Predicted by CRISPRDetect 2.4 *** >NC_007776.1 Synechococcus sp. JA-2-3B'a(2-13), complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 867185 36 100.0 37 .................................... AGTCTAACTCCCACCAACCTCCCAACCAACCTCCCCC 867112 36 97.2 46 ..........T......................... TGCCGTGCGGTGACGAGGAGCCGGATCATGTAGTGTAGACGATTAA 867030 36 100.0 38 .................................... GAGATCGGATGAACCGGCCAGCTTCTATCCAGCTGACC 866956 36 100.0 37 .................................... TTTCTAGGTGACGGAAAATTGTGACCTGGTACACCGA 866883 36 100.0 40 .................................... ACGGTTGAGTCTCCGGGAGCGCGGGTACCCAGGTTGGTAG 866807 36 100.0 37 .................................... GTCCACTTCTGAGAGTTCCTCGGCACCTTTCGCTTGG 866734 36 100.0 36 .................................... TTGATTGGCAAACCGTTCCAGGTTTGCCAGTACCAT 866662 36 100.0 38 .................................... AGCGGCAGCAGCCGTGGAAAAGGCCTGTAACGCTGGGT 866588 36 100.0 40 .................................... TGTTCTTTATTCCCCGATAAGGGAGGAGTTGATATGGAAC 866512 36 100.0 33 .................................... TTTCCTATCTTAGGAAGAAATCATGCCTATATC 866443 36 100.0 39 .................................... GCTGCCCATTAAGGTCGGCAAGCCCTGCCGCCAATATGT 866368 36 100.0 37 .................................... TTGACACCCTGCTAGCCTGCGTTGCCATTCCAACTCC 866295 36 100.0 37 .................................... TTGACACCCTGCTAGCCTGCGTTGCCATTCCAACTCC 866222 36 100.0 41 .................................... ATGTTGCTCGTATCCTCGCTCTCGTGAGCTGGATCGAAGCT 866145 36 100.0 37 .................................... CCTATAGCCACAAAAAATCCCCCGCCAATAAGGCGGG 866072 35 83.3 0 ...TTT..............TA.....-........ | ========== ====== ====== ====== ==================================== ============================================== ================== 16 36 98.8 38 GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Left flank : CCTTGTGATAAGCGCCGCAAGAAAATTGCCGACCTGCTAGAAGGCTACGGCAAGCGCGTGCAATACAGCGTGTTCGAGTGTGTCCTCGACAAAGACAAGTTCGAGGAGCTCAAGCTACGGCTCCGGAAAAGGGTCAAGCCCGATGAAGACAGCGTCCGCTTCTATCCCCTCACCAGCCACGCCCTTGACCAAGTGGAAATCTGGGGTGGGCCCCCCTTAACTGCACCCCCCCACTCGATCGTTGTCTAGCTCAAGCAACTCTCCACCCACTTCAGTACTTGATGTTCTCAAAAGCACACAAAAACGGTATCAACGCTTTTGCGAGCGCCTCGCCAAAACCCGCAAAGGCCGATTCTTTCGTTGACCCGCTCGATGCCTTGCGCCACAAGGCTTTCAGGCCTCTCACCCCCCTCTCCCAAGCTCTTCTTTGCCCTCTTCGACCGACCCCCTCGCAAATGGGTCTTGCATTCCTTGCCCTGCTTGGGTTTAATAGGGGTAGA # Right flank : TTAGGGATCCCCGGTTGGAAAGAAATTGGAAACAGAGAAAAGATTAGAGTAAAGCCGGTGCTGCTCGGCAGAGGCCAGGCAGCGCTGTTGGTGCTCAGGCCACTCCTGGAGGGCTAGTTTTTGTTGTTCCTGGAGAAGGGTTTGTAGGTCTGAGTCTGCAGGCAGCTCGCCTTGCAAAACCTGCAAATCGTTAAAGCGGCCCAGTTGATCCTGCAAGCACTTCAGGGTTGCTATCCAATCTTGCATGGTTTCCCCGTAAAAGGGCGCAAAAAACTCCACCTGATAGCGCAGCCGTTTGGTGGCCTTGCGCAGCTCGTGCAGTTGCTCAGCTTGGGCTTCCGTTGCGGGGAAAGCAGGGATCCGCCAGCCTGGCTGCAGCAGCCACTGGGCCAGCAGAGGAGTCAGCAAGTGGGGCAAGCTTTCCGGCAAAGGCAGCTCCGCCTGGGGCTTATAGCGGGGGTGAGCCAGCCACTGCTCGCAGGCAGCTTGAAACGCCAGGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 5 1429247-1428062 **** Predicted by CRISPRDetect 2.4 *** >NC_007776.1 Synechococcus sp. JA-2-3B'a(2-13), complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 1429246 37 100.0 34 ..................................... TGCTCCACAGTGAGGTTGCTTGGCGGCGAACCGG 1429175 37 100.0 37 ..................................... AGTAAACGGTAAACTCTACAGAAACTTACCTCCACCC 1429101 37 100.0 41 ..................................... AGACGCGACGTCGCGTGGATCCCCAATGCCGCCGACCGGAC 1429023 37 100.0 38 ..................................... CCTATCGTACCAGCGACCACCGCTACCGTCAACACCAT 1428948 37 100.0 46 ..................................... GGCTCCGGTTTCTAGGTGCCGAAAGACAGTAACCTGGTACACCGAG 1428865 37 100.0 43 ..................................... GCGGAATCCGCGGGCTTTCGCCTTGCGGATCCGCTCCTTCGCT 1428785 37 100.0 37 ..................................... ACCTGCTCTAAAAAATAAAGGAGTGCCTGAGGTAGGC 1428711 37 100.0 36 ..................................... GCCTGAGGTAGGCACTCCTTATATAAGACTAGTTCA 1428638 37 100.0 37 ..................................... ATGTTCTTTCCATTTGTTGGTACAGAATATTGCTGTC 1428564 37 100.0 42 ..................................... GGGAGACTTCCCGCAGACCGAACGGCTTCGACAGGTGAACAC 1428485 37 100.0 38 ..................................... TACTCATACCGCCCTTTTTGCACCCCTCTCGGGCGTAC 1428410 37 100.0 43 ..................................... ATAAAATACCCACCAGCGTGGGCAGTGGCGGGTAGCACGCTAA 1428330 37 100.0 44 ..................................... TATCGCCACGGCTACCTAAACCCCGCTCCACGTTAAGGTAATGA 1428249 37 100.0 39 ..................................... CACAGTTGCGGATTTAGCAACCTTACGGTTAAACTTCCT 1428173 37 100.0 38 ..................................... CCGTTACAGTACACCTTTTCACCGTCGAAGTATGGCTC 1428098 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 16 37 100.0 40 GTTGATCCCTACCTTTTCCCCGCAAGGGGACGGAAAC # Left flank : GGCCCCCGCTTTTTGGTAGTCCTCATCCGTGAAGCCCGCCCCCTGGCCTGCTTGGGTTTCCACCCACACCTGATGCCCCTGTTCGGTTAAGACCCGCACCGCCGCCGGTGTCAGCCCGACACGGAACTCTTGCTCTTTGATCTCTTTGGGCACGCCAATTCGCATAGGGATCCCCGTAGGGCTGCTTTCCAGTCTAGACAGACTCTCTCCCCGATGGGATCCCTGGCCTGAGCAGGAGAGCGAAAATTGTAAAGTTTTGTGCGCGATCTGTCGGGGCAAGCAATCGCCAGGCTAATTTTGTTAGCTCAAGATTTCAAGGGCAAACCTAGATCTCTTGCCATGATTGGCACGAAAACAAGACATAACAGCCTCAGAAAGCCCAATTTTCTTGCTTGCGCTTATCCCCAAGAGCAATGTTAACATCTATGTCACGAAGTCTCCGTACTCCCTCGCGAACGCACCTTGAAAACTGCATGGATTCAAGCTTTTCCGGGGGTAGG # Right flank : CTGAGCTACGCGAGGCGAGAGGAGAGAGAAAGGAAAGTTGATCCCTGCCTTCTTCGAGACATCCTTGAGAACTGAGACTGGCGGATTCTAGGGTGGATCCCTAGCGCAGGAAACGGGCCAGCAGCACCAGTCCGATGCCGCCGAACAAGATGTTGAAGCTCCAGGCTGCCGCCCAAGGGGGAAGGGCTCCCACTTCTCCCAAGCTGCGAGACACGCTCAGAACCACGTAGTAGCCAAACACCAACAGGATCCCGAAGACGACGCCCCCGTAGCGTCCCACCCGCCGCGCGGTGGTGGATCCCAGGGGGAGCGAAATCAGCACGGCAAAAAAGCTGGCCAAGGGCAGGGAGAAGCGCATGTGGAACTCGGTGCGCAGAGCCTGAGTATTGAGATTGGAGCGGGCCAGGCGGGAAATCCGCTCTGCCAGCTCCGGCAAGCTCAACTCGCTGGGGGGAACCGGCGGCTGCATCAGGGCAGCCAGATCCTGGGAAACTTGCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATCCCTACCTTTTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 6 2016367-2018657 **** Predicted by CRISPRDetect 2.4 *** >NC_007776.1 Synechococcus sp. JA-2-3B'a(2-13), complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 2016367 36 100.0 36 .................................... GCAATTGCAGGGGTAGAACACCCCCGCATCGTGGAT 2016439 36 100.0 38 .................................... TTGTTCTTTGGTATACTTGGCGTCTAAGTCACTGAGGT 2016513 36 100.0 39 .................................... AGTCTTACCCTCCACCGACTGGTGGTTCTGCTCGCCGAA 2016588 36 100.0 40 .................................... ATCCTGGACCCGGAATACGACGACGAGCCCGTCATTTTTG 2016664 36 100.0 39 .................................... GTAAATCTTTGGGCTCCAAAGTGCCCCCATTACCCACCC 2016739 36 100.0 39 .................................... GTAGAGCTATTAAAGTAACAGCTACAACCTCTCCTGGAA 2016814 36 100.0 41 .................................... CCTTGATTACGGCCTCGATTTGGCTAACCCAACGACGTGCA 2016891 36 100.0 38 .................................... AAAATATAGGTATGTCAATATAGATACAACCATTTGAA 2016965 36 100.0 42 .................................... ATGAGGTGTATAGGCCAAACTCGTTCGATCTATCCTCGCGGG 2017043 36 100.0 40 .................................... TACCACAAGGTGTATACCAATGAAGTAGAGTACCTCGAGC 2017119 36 100.0 38 .................................... ACAAGACATGACTAGCCTCCAAAGGAGTAGATTTTCAA 2017193 36 100.0 41 .................................... ACTTTTAAAACTTTTTTAAAAGATCATCTTAGCTGACCCTT 2017270 36 100.0 41 .................................... CTCTAAGTGCAACCAACTTGCTATATTCCCGTTGTAGGTCT 2017347 36 100.0 43 .................................... ACTGTTCCAAATCAGGAACGTAAAACGAGACGGAAATGTATCC 2017426 36 100.0 41 .................................... TCACCGAGGTTTGAAGATTGGTGTCTCGGTTATTCAGACAG 2017503 36 100.0 36 .................................... TCATCGGTCTCACGCAGACTATTGGTAACCAGCCGT 2017575 36 100.0 37 .................................... CTCAAGGGCGGCTTTATAGCCGTTTCTTTCTACATCC 2017648 36 100.0 40 .................................... AGCCAGCTCTTAGCCAACTGAATTTGTTTGTCATTGAGTT 2017724 36 100.0 38 .................................... CATTGCACAAAGCCCCCGGCGGAGAAGATTTGCATCGC 2017798 36 100.0 38 .................................... TAGATTAGCTGGACCATCCGGAGAGCTTCCCGGATGGT 2017872 36 100.0 36 .................................... AGGATGACTTTGGAGAAATAGCTCAGCTATTTCCAT 2017944 36 100.0 43 .................................... TGTACTACAGTCCTGACAAAGGGCTGTACGAAGGGCCAACGGT 2018023 36 100.0 37 .................................... TTTTTGAAGGAACAGCCAAACCTACAGTGAATTTGCA 2018096 36 100.0 39 .................................... GACGGATCCCTCGTCTCTATATTCTTCCAGCTCTTCTAA 2018171 36 100.0 35 .................................... TTGTTGTCTTGGTTGATCTGGAAAAGTAAGAGGGT 2018242 36 100.0 45 .................................... GTTAGTCCCTGAATAAGGGAGGAGGATGGCATGAATGCAGCTCTA 2018323 36 100.0 38 .................................... TAACGTGTTGAAAGCCGGATGAATCTCCTTCTTCAACA 2018397 36 100.0 36 .................................... ACGAGTACGATACGTTCCATAACAAACCTCCCTTTC 2018469 36 100.0 43 .................................... GATCAAGTCTAACCCAATTCGGGTAGACCGACTGTGTTGCAAG 2018548 36 100.0 38 .................................... TTGGGGATTAGGATCTTCCCTTCCAGGAAGACTTTTTT 2018622 36 94.4 0 .....................T.............A | ========== ====== ====== ====== ==================================== ============================================= ================== 31 36 99.8 39 GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Left flank : GCGGGATCTGATCCTGAGCGTGCCAGGCGTGCTCGACTGCCATGACATCACTTCCCGCGGCATCCCAGGGGAAATGGTCTTTATCGAGATGCACCTGGTGGTGGAGCCACAGGACATTGAGTCCGCCCACCGCCTCACTGAGGAAGTCGAACACCTCCTGCAAGGGCGCTACGGGCCGGCGCGGATCCTCATCCACCTGGAGCCTCGCTCCCATATCGAGCAACCCTAGCAGGAGCTCGCCACCTGCCAACAGATAGCCTAGCCAAACCTCAGGGATCCTGATGTTTCCAAAAGAACACCAAAACGGTATCAACGCCTCTGCGAGCGTCCCTCAAAATCTCGGAAAAGCCTATTCTTTCGTCGGATCCCTCGACGCCTTGTGCCACAAGGCTTTCCGGCCCCAAAACCCCCTCGCCGAAACTCTTTTTGCCCCCTTTTTTCCGGATCCCTCGCAAACGGGTCTTGCATCCCTTGCCCTGCTTGGCTTTAATAGGGGTGGA # Right flank : AGAGAAAATCGAAATCAAACGAAACTGGGCCTGGTTATCAGGCGGGCAGCGAAAGCAACGGCTGAAACGCTCCAGAAATCGGCCTGCTGGCTGGGGAAAGTCTGGGAAAGTGAGGTCTGGATCCCCGGCAGCCACCGCTGCCCAAAAGTAGCGCAATTGTGGGGCCAAGGCTTGTGCCTGTTCCAAAGGCAAATTCAGCGGTGCGGAGGTTAAAAACTTAACCACCGCTGGTTCACTGCGCTGGGCCATCCATTCTCGCGAGAACGCCTGCAAATCGGGCCAATCCGGCAGGGATCCCACCCGGTAGCTCTGGATATGGACTTGGATTCCGGTCTCTCGATCCGACCGGATCTCGACAAGGCGGTAGGGGTGGGGAAAGCTGACCAAAGAGCCGGTGGTAATGTCGTAAACCCCCCCTCGTCGGGCGATGTGCTGGATGTGCAGATGTCCGGTGAACACCAGTTGCACCCCATAAGCTTGCAGCAGCCGCCGCAACTGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //