Array 1 14945-15650 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDBT01000012.1 Faecalicatena contorta strain D5-21 Scaffold12_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 14945 33 100.0 35 ................................. ATCGTTAGCTTTTGTTTTTCATCGCAAACGATCAT 15013 33 100.0 35 ................................. TTTGGAACTTCTGATATTAAAGAAGAATTTGATGA 15081 33 100.0 34 ................................. AGATACAAACGGGGCGGGTTTATCCCGCTCCTTT 15148 33 100.0 35 ................................. GTCAAAATCATCTTTGAGACGTTCAACGTCTTTTT 15216 33 100.0 33 ................................. CCAAAGTATGACAACTCCAAATTATACAGCTAT 15282 33 100.0 34 ................................. ACACGATGAACTACCAAAAATTTTATCCCACAAC 15349 33 100.0 33 ................................. CCAAATCTGTACGAGATTGAAATAGATGAAAAG 15415 33 100.0 34 ................................. CAGAGCCTGGAAGAAGCCACGATAAAAGTAAACT 15482 33 100.0 35 ................................. GATTTTACCATATTGCGAAGAGTACAGAGGAGAAC 15550 33 97.0 35 ......................C.......... AATCATGTAGATCAAAGTCAGATTGGGGTCCTCAA 15618 33 93.9 0 ...........................C....A | ========== ====== ====== ====== ================================= =================================== ================== 11 33 99.2 34 GTCACCGCTTGCGTATGCGGTGTGGATTGAAAT # Left flank : ATATATGGGAATAAAATATATTCATGACAAATGTCATGTGGTTTTATAGTATAGAAACCTCTTTTGAAATTTCCAATATCATAAAAATTAGCGGGGGATGCAAACGTCGTGATAAGGTATTGAAGTATTGTTAGAAGTTTCCAGTTTTTTACATGGAAGTTTGCCGTACTTATTGATATAGTAGATATGGTGTAGCAGCTGTTTGAAGAAGCAGGAATAACAAGGATAGATGAAGCTGTAAAATGCATGGTGGAAATATATGGATTAGGGGCTAAAACAGCATTGGGGTATGGCGTAGGATAAATGCAGTAAGTGTTAAAAACAATAAAGTGCGAATCAGTAGCGGACAGGAATTTCCCGGGAGATTCGCACCTTAAAAATAAGGAGCGGAAGGGGATACAGATGGAAAAAATACAAATTTAATGAGATGAATCAATTGATTTTGTGGTAAATGTATATTATTATGATCTTGAAGTAAAGCAAATTTATTTAGTTTTGCT # Right flank : AAAATAAGATTACCAGCTAACCCACCGGGAAAAGCCATAGTCACCATCCAAGTACCTCGAATAATAATTAATTTGCTTTTAAGCTGAGATAAATTTTCGATGTACTAAGTATGGTTTAAAATCTTCTTGATATATCCTCTGCATCTATTCTTTTGTCGTAAGATAAATGAGACGCCACAGCAAAAAATATTACATGCTATTTTTAACATGTTATAGGCAAGAATTCCCCTTCCTCTTTAGGTGGGGATGAATTGCAATTAGCCTATCGGCGAAAATAGCTATATACCATATCTGGTACAGAAGATTTTTTCTGAAATCTAATATCAAATTCTTTGATAAAATTCTTTTCTAAACTATGGACGAACACTTGTTCTGTTATGGCAAGCATGATATAATGTAACCAGTCGATAAATTGAAGGAGTGGTGAATGTAACGGAATTAGACCGTAATGCACATTCAGCATATTTGCTCTGTTACCATCTGATTATGGTAGTAAAATC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCGCTTGCGTATGCGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACCGCTTGCGTATGCGGTGTGGATCGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.80,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 158787-160703 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDBT01000001.1 Faecalicatena contorta strain D5-21 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 158787 31 100.0 33 ............................... ATTTTGACATTTAAGTATCTCTTAAATAATCCT 158851 31 100.0 34 ............................... TGCGGGCTTGTTTGTTACAGAATTACCTTTGATC 158916 31 100.0 35 ............................... ACACTATGAATTACCAGAAATATTATCCGACAAGT 158982 31 100.0 34 ............................... ACACTATGAATTACCAGAAATATTATCCGACAAG 159047 31 100.0 33 ............................... CTCCTAATTCTGACCGCGTAACATTCAAAATGT 159111 31 100.0 34 ............................... TTTCGTGAAAGTATGGTAATTTCCGAGCATGATC 159176 31 100.0 34 ............................... CCGTATGTACAATGTAATTTTACTGTTTGTGGAG 159241 31 100.0 33 ............................... AGATACAAACGGGGCGGGTTTATCCCGCTCCTT 159305 31 100.0 35 ............................... ATAAAGTCTGGATGTTATGATTACCCTGCCAATTC 159371 31 100.0 36 ............................... AGCGGACATTTTAAATGTTACGCGAAACGAATTAGG 159438 31 100.0 35 ............................... GAAACGAGCCATTTATTTTCGCAAACAAAAATTTC 159504 31 100.0 33 ............................... GTTATATTTTTCCGTTTCTGAAGAATTTAATTT 159568 31 100.0 33 ............................... ATTTGTAGAATATGTTTCAAAAGGATCAAAGTC 159632 31 100.0 35 ............................... CCAAAGTATGACAACTCCAAATTATACAGCTATCC 159698 31 100.0 34 ............................... ATACAACTGTATAGATTTAATTATGAGTTGTCCT 159763 31 100.0 36 ............................... ACACTATGAATTATCAGAAATTTTATCCCACAACTG 159830 31 100.0 36 ............................... TCCACCTATCGTACACTGTAAAAATAAGTCCCCTGC 159897 31 100.0 34 ............................... AAAAAGCGTTAACTCAAGAAATCTTTGATCGATT 159962 31 100.0 33 ............................... ATCACCAAAAACTCGTCATAATTTGCCGCCGTG 160026 31 100.0 33 ............................... CTTTTTATTATATATATATTATAACACAAAACG 160090 31 100.0 34 ............................... TCCTTATCTTGGTTTTATATAATATTTTGTTGCA 160155 31 100.0 35 ............................... GTCTTTGTGTTGCGCATCTTTTTTAACCATATACC 160221 31 100.0 33 ............................... ATTGCAATCCACTCCCCCACTAATACCGGGCAC 160285 31 100.0 33 ............................... TGATGTGGGTGTCCTTTGCGACACCTACTTTTT 160349 31 100.0 33 ............................... GCCATTATTTTATCCAAAAGTATTTTCATACTT 160413 31 100.0 33 ............................... ACAGGGTATGAATTCAATGGCGCAGTATTTTAT 160477 31 100.0 34 ............................... CACAACAGACTTGACAGCAGCAAAAGTATTATTC 160542 31 96.8 33 ................G.............. CAACCACTACTGATCAAGCGCTATATCTAACTA 160606 31 96.8 36 ................G.............. AGCTCATGTATAGCATAGAACCATTTCCCTGAAACT 160673 31 77.4 0 ........CGT.TG........A.......C | ========== ====== ====== ====== =============================== ==================================== ================== 30 31 99.0 34 GTCGCTCCTTCGCAGGAGCGTGGATTGAAAT # Left flank : ACGGTTACGACCTGTGGTGTCGGATACCGTAACTATGCAAGTGGTGCGGCTAAAAAGATAAAGATAAAAGGAGCGGACTATCTTGGAAACTTTCAATGCCGTGGATTTGATACATTTGGGGTGTTTGGGAAGTTTGGGGGAATAGCGAAGAAGCATCCTGATAGGAAGGATATGGAGAATGCAAGGCAGTTTATTAAGGGAATAATTAATGCATGAGCGGTATTTCTTAGAAATGAAATATATCATTGAATCGACTAAAACAAATCGCAACATGGGAAAAAGCGACGGTTCCAGAGCTGTGTGATTAAAGGGCATAGTAGAGATTTTAAGTGCGAATGTCAAGTAAACATAAATCCCTTAGGAGATTCGCACCAAAAAAACGTGAAAATCTGAATGGTTTGAAGTGAATGCGAAAGGAAAAGCTTGCTTAAAGAGAATAGAGTGGGTATAATTGTCTAATAGGAATGAGAGGACAAAGGGGATATTTGTGCAATTTTGCT # Right flank : CCAATTACAAAATACGAGGGCCCAAAGAAAGGCAAAAGACATGACAAATGAATTTTACAAATATGAGCTCTCAAAAGAAATTTTGGAGTCGTTAAATGGACTGGGTTACAAAGAACCCACAAGTATACAACAGAAGGTTATTTTACCTATGCTTGCCGGAAAAAATGTTGTTGTGAAAGCCCCTACCGGCAGCGGCAAGACAGCAGCATTTGCCATACCTATCTGCGAAAGTATCAGCTGGGAAGAAAACGCACCACAAGCACTAATTATTGAGCCAACCAGGGAACTTGCAGTCCAGGTCAGCGAGGAAATGTTTTATATCGGAAGAAAAAAGCGGCTGAAGGTTCCGGCACTATTCGGTGGATTTCCGATCGACAAGCAAATCCAGACCTTGCGGCAGAAGACTCATATTGTGACAGGGACACCGGGGCGTATTATAGATCATTTGGGCAGGGAAAGTCTGAAGCTGGATATGGTGAAATGGCTGGTAATAGATGAAG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTCGCAGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 1 3509-46 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDBT01000028.1 Faecalicatena contorta strain D5-21 Scaffold27_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 3508 32 100.0 33 ................................ GTTGCGATAAATTGGTAACCATAATTTATCGCT 3443 32 100.0 33 ................................ ATGACCAAAAACTCGTCATAATTTGCCGCCGTG 3378 32 100.0 35 ................................ TCCTTTTAAATAGATCGGTTTCAGCTTTTTCTGGA 3311 32 100.0 34 ................................ CCTGCCATGACAAAAATGCCTGTCTAAGCTGGTC 3245 32 100.0 35 ................................ ATTGTAAAATTACGTGCGTAAGATGTTATGTAGCT 3178 32 100.0 33 ................................ CAAATTTATATGAAATTGAAATGGATCAAAAGT 3113 32 100.0 33 ................................ AGTCAATCCATGTTACTATAGCAAGAGGTCAGG 3048 32 100.0 34 ................................ AATTTTATTCTGAACGTAACCATAACGAGTAAAA 2982 32 100.0 33 ................................ TATAAAAGTTTCGTTGTCATTAAGATAAACATT 2917 32 100.0 34 ................................ CTGTAAATTGTGTTACGCTCCCTTTTGCAACACT 2851 32 100.0 34 ................................ AATGTCTTGTTCCATATCTTCGCTCATTCCGCCA 2785 32 100.0 34 ................................ ATTTATAGTCGATTTTTTATTACGAGAAGGATAT 2719 32 100.0 33 ................................ AACACAGCAAAAGTGATCAGAACTGAAGAAGTT 2654 32 100.0 34 ................................ TATATAGCTGTACGGATAGCTATATAATTTAGAA 2588 32 100.0 34 ................................ CGCAACAAAAGCGTTATCAGAAATTGACAACTGG 2522 32 100.0 33 ................................ CACACGTGGTAAAAATAATTCCAGTACAATCCC 2457 32 100.0 34 ................................ TACATGGTCAAAAAACGGATTGTGATATGACCAA 2391 32 100.0 35 ................................ ATCACCAAAAACTCATCGTAATTTGCCCCCGTGTA 2324 32 100.0 36 ................................ ATGGTGTGAAAGGCGGTCTGAACGTCTGGGATTCTC 2256 32 100.0 34 ................................ ACGTGAAACATTTTCGATGTCTTCTGCTTGCCCA 2190 32 100.0 33 ................................ TATTATCCAACTGAATCTCATAACAATGTGCAT 2125 32 100.0 36 ................................ CCTGGGATTGAGGTTATAGTATACAAGAAGAAATTT 2057 32 100.0 33 ................................ TGCTGATGTCTCCGCGGATTGTGCTGAGACTTT 1992 32 100.0 35 ................................ ATTTTTTATCGTTTTGTGTTATAATGTATATAGAA 1925 32 100.0 36 ................................ ACAGCATGAATTACCAAAAATTTTATCCTACAACTG 1857 32 100.0 34 ................................ TATATAGCTGTAAGGATAGCTATATAACTTGGAA 1791 32 100.0 33 ................................ AGTCGATCCATGTAACCATAGCAAGGGGGCAGG 1726 32 100.0 34 ................................ TTGTTGTAACTGTTGATACTGTTTGACAAAGCGA 1660 32 100.0 35 ................................ TTTCGCGCCATTTTAGCCTCCTGTCCACGGGTTAT 1593 32 100.0 35 ................................ CATGCTATGAATTATCAGAAATATTATCCGACAAC 1526 32 100.0 33 ................................ CAATCGGAAACTAACCACTACTGTCCCGATGAA 1461 32 100.0 35 ................................ AAATTTTATCTTAAGTAGTATCGACAATTGGTGGA 1394 32 100.0 34 ................................ AGAAATTTATGAATATATTGATCAACAGGATAAA 1328 32 100.0 34 ................................ TGTCAGATATTTTTTAGCGTAAAAATCATATTGG 1262 32 100.0 35 ................................ TGCTGATGTCTCCGCGGATTGTGCTGAGACTTTGT 1195 32 100.0 34 ................................ TTTCGTGCCATTTTAGCCTCCTGTCCACGGATTA 1129 32 100.0 34 ................................ TAGAGATATAAAGCCATTGTTTTTTAACAATGGG 1063 32 100.0 33 ................................ TGCTGATGTCTCCGCGGATTGTGCTGAGACTTT 998 32 100.0 34 ................................ CCAAATCTGTATGAGATTGAAATAGATGAAAAGT 932 32 100.0 33 ................................ TGCTGATGTCTCCGCGGATTGTGCTGAGACTTT 867 32 100.0 34 ................................ CGTTTATTCCATTAGCGATGTTAAATGCATCGCC 801 32 100.0 34 ................................ ACACAATGAATTATCAAAAATTTTATCCTACAAC 735 32 100.0 34 ................................ TGTTGATTTCATCCGCCCCCTGTCGGCGTGAATT 669 32 100.0 34 ................................ CTCTAATCTCTCAGCGTACTCTGGTCGGATTGTT 603 32 100.0 35 ................................ AATAACTTTTGCGGAAGTTAACGGAACAAAGCTTG 536 32 100.0 33 ................................ ATCCGTGTTATCAGTTCCGAAAACCATTACGTT 471 32 100.0 33 ................................ ATCGTTAGCTTTTGTTTTTCGTCACAAACGATC 406 32 100.0 35 ................................ GAACGATAATTCTCATCAAAAATTGGGTAATTTCT 339 32 100.0 33 ................................ CAAAATTTTTGTTTTGAAACATAATGTAATCAC 274 32 100.0 34 ................................ TGGTTTTATAATAAATTGATTACCATTATAACCC 208 32 100.0 33 ................................ AAAGCGATAAATTGGCAACCATAATTTATCGCT 143 32 100.0 34 ................................ ATCCGTGTTATCAGTTCCGAAAACCATTACGTTG 77 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 53 32 100.0 34 GTCACTCCCTGCGTGGGAGTGTGGATTGAAAT # Left flank : TTTATTGCACAGACTGTAATGAAACATGATGGTTTCAGACATTCAGTATCCACTTCGTTTCATGCTATCCGTGCGCTAATGGCGTACGGCACTATCCATCATAGATGAATTTCAATGAGCCGGATACGTAACAGTTATGCCTAAACTATTACCTTACGATAACAGTATAATAATATTACGGTAGGAGCATGTAGTTCATTTAGGGACTGCACCATGGAGACCTTGGGGAATATAATTATCAGTAAACTGTCAAAATATAGAAAATATTAAAAGAAAATTGCTGATGGGAATGTTCTGATAGTATTTATGGTGTTTTAGGTGCGAATGTGAAGTGAACATAAATTCCCCGGGAGATTCGCACCATATAAATCTATAAAATGTTATATTGAGACGAGAAAAAAAGCGAGTTTGAGCTAAAACAGTTGTAATTTCTAGGAAAATGCTATAGAATTTTAGGAGAAATGTATAATTATCATGTGTAAAAATTGTGCAATTCTGCT # Right flank : TTGGTTTTATAATAAATTGATTACCATTATAACCCGTCACTCCCTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTGCGTGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : NA // Array 2 16170-13754 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDBT01000028.1 Faecalicatena contorta strain D5-21 Scaffold27_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 16169 33 100.0 32 ................................. CGTGAAACATTTTCTGCTTCTTCTACTTGTCC 16104 33 97.0 35 ................................T GCTCATGGTCATCTGCTTTAAATGTTAATTTTACT 16036 33 97.0 35 ................................G GACGTACCGATTGAACGTAAGTATTCTATGGACGT 15968 33 97.0 33 ................................T CAAAATGTTTATCTTAATGACAACGAAACTTTT 15902 33 100.0 34 ................................. TAGTGTGAAAAGCCGCCTGTACATCTGGGATTCT 15835 33 97.0 32 ................................C CTCCCTGCGCAGATATTGAAAATCATTATACT 15770 33 97.0 33 ................................T CATTTCGTCAACGTCTATTTTCTTGTACTATTT 15704 33 100.0 32 ................................. CGTGAAACATTTTCATCTGCATTATCAGTTCC 15639 33 100.0 33 ................................. CCTACAACTGCTACTGTTGCAAAAGGGAGTGTA 15573 33 100.0 32 ................................. TTTTGCGTAAAAATTTTGTTGCCCCAGGCGTC 15508 33 97.0 32 ................................C TCTAATCTCTCAGCGTACTCTGGTCGGATTGT 15443 33 97.0 34 ................................T CAGATGAAGAATTTGAGGAAGAATAATTATGTTT 15376 33 97.0 33 ................................C ATCAATAACTGACTATTAGATTTTGAGTCATTT 15310 33 97.0 34 ................................C GTTTTCTACTTGCGTCCCTGTCCACGTTCCAATC 15243 33 100.0 33 ................................. TAAAGACGTGATGTTATGATTACTCTACCAATA 15177 33 100.0 33 ................................. AAACAAAAATTTTGGGTCAAAGTGGTTTTATGC 15111 33 97.0 34 ................................G TTGCAATCCACACCCCCACTTATTCCGGGCACAC 15044 33 97.0 33 ................................C GTGTCTCCTTTTAGCAACGCGATTTTGTTTACA 14978 33 100.0 32 ................................. TCGAAAATAGGGTAATCATTTAAACCCAAATC 14913 33 97.0 34 ................................T ACATGATCAAAAAACGGATTGTGATATGACCAAT 14846 33 97.0 33 ................................C AATACAGTCCCTCGGCGTTGTACACCTCGGTCA 14780 33 100.0 33 ................................. TCGAGAGTTTTTGATTCTCGTCACAAACTATTA 14714 33 97.0 34 ................................C AGATGCGGTTCTTTTCGATGCTCAATTTATCTGC 14647 33 97.0 33 ................................T GGACGAGTTCCAATCGGAAACGAATCACTATTG 14581 33 97.0 33 ................................T CCAGTGATGAGGTATCAATTGTCGGGATTTCTT 14515 33 97.0 34 ................................T GCTGATGTCTCCGCGGATTGTGCTGAGACTTTGT 14448 33 97.0 32 ................................T GACGAATATGGATGTCGGGCAGTATGAAAATG 14383 33 100.0 33 ................................. CACTATGAATTATCAGAAATTTTATCCTACAAC 14317 33 97.0 32 ................................T TTTGACAACTGCTGGATCATACGTGCCCCCGG 14252 33 100.0 34 ................................. CACAATGAATTACCAAAAATTTTATCCTACAACT 14185 33 97.0 33 ................................G ATTCATTACGCCAAAAATGGCGTGCACATAGTG 14119 33 97.0 32 ................................T TTACGACACATTGATGCCCAATGCTGAATACC 14054 33 100.0 34 ................................. CGGATAAAAAATATGCCCCCTATGTGGAATTCGG 13987 33 100.0 34 ................................. TGTTTGCTAGTTTCCTGATCATGGGGACTGTAAA 13920 33 100.0 33 ................................. TTCCAGTAGCGCTCATTTTCGGACATTTTATTC 13854 33 97.0 35 ................................C CGGTATTATTACGAAAATAGACTACAGGGCCAACA 13786 33 90.9 0 ........C..........T............C | ========== ====== ====== ====== ================================= =================================== ================== 37 33 98.0 33 GTCGCTCCTTGCGTGGGAGCGTGGATTGAAATA # Left flank : TATTGTCAAATCCGGTTTTGAAATATTTATATAAAATATCGGATATGGAAGCATTTGGTCATAGCTATTCCTTTGATTACCGGGCATTTATATCTGTGTCAGTATGCGCTTTGGTTGTTTGTGTATTGCTTTCTATGGGAATCTTAAAAGAATGGAAGACAAAGCGGATAATTGAAGGGATAGGTAAGTTTGAATGAGAGGATGAAGAGGAGAGAAATATATCGGGAAAACGCTCATTATTTATGATGAAATAGAAGAGAAAGTAATGCAAAGTGATATCAGGGTGGGATAACCTTCTGGTAAATTCCGGATATGGCCAGGTGCGAATGTGAAGTGAACATAAATTCCCGGGGAGATTCGCACCAGATAAAAGGGGGAAATTTGATAAAGAGACGAGAAAAAAGATGATTTGACCGGAAAGAATTGTAATTTTTAGGCGTATGGTATAAAATTTAGAAGTAAAGTAGAATTTTCGTGTATGAAATCTGTGCAATTTTGCT # Right flank : ACACTTTCCTTTTCCTGATCCAGCATCTACCTGTGCTGACAGTGATGGTCACTTCCTACACAGCTACAAGGTACTCGATCTCGATATGAGGGCATAAGTTGAGCAAGGCTAAGAAAAGGCGATCTCCTTTACAGTACTATCGTTGGATTTGTTATGTTCACTATATTAGAAAAAAGGAGGAACTTAATGAGATATTTAGCCCATATTGAAGAAGATTCAGGAGAACAAACGTTAAAGGAGCATTTGATAAATGTAGCCGATTTATCAGCAGAATTTGCAAAGTCCTTTGACTGTTATGATTGGGGCTATTGTTGTGGTATGCTGCATGATATTGGAAAATATTCCGAGGAATTTCAGCAACGCCTGGCAGGCAGCAATATACGTGTTGACCATTCTACCGCTGGAGCAAAATTATGCTATGAAACAGGCGGCATGTATGGCTTTCTTAGTTACTGTATAGCTGGGCATCATACAGGCTTGCCAGATACGGGAGAGGACTC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.52, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTGCGTGGGAGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.60,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 46-3038 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDBT01000026.1 Faecalicatena contorta strain D5-21 Scaffold25_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 46 32 100.0 33 ................................ GATTTTTTTCGATGCTCAATTTATCCGCGATAA 111 32 100.0 34 ................................ ATTTATTATCGTTTTGTGGTATAATAGATATAGA 177 32 100.0 33 ................................ AGTCGATCCATGTAACAATAGCAAGGGGACAGG 242 32 100.0 35 ................................ ACACTATGAATTATCAGAAATTTTATCCCACAACT 309 32 100.0 33 ................................ AAAACTAAACAAAAAAATCCTTAATCACTATTA 374 32 100.0 34 ................................ ATGACCAAAAACTCGTCATAGTTTGCGCCGGTGT 440 32 100.0 35 ................................ ACGTCACTATAGCAAGAGGTCAGGGAAAACAATAT 507 32 100.0 33 ................................ TATCCCACAACTGTTAGTAATGACCAGCTTAGA 572 32 100.0 33 ................................ ATATTGCTCGTTTGTAGAATATGTTTCAAATGG 637 32 100.0 35 ................................ TGCTGATGTCTCCGCGGACTGTGCTGAGACTTTGT 704 32 100.0 34 ................................ ATTACAGTCTACACCCCCACTAATACCTGACACA 770 32 100.0 34 ................................ GCATGCTTTCGGCTTCATCTTTATGTTGTGCGTC 836 32 100.0 33 ................................ ACACGATGACGTTTTTGCAGTTGTTTGAAACAA 901 32 100.0 33 ................................ TGCTGATGTCTCCGCGGACTGTGCTGAGACTTT 966 32 100.0 34 ................................ ATAACCTCAAATTTGACGGATCGTTTATAGTTGA 1032 32 100.0 34 ................................ ACACCATGAATTATCAGAAATTTTATCCTACGAC 1098 32 100.0 34 ................................ CATAGACTCAATATCTGTGTTTATTGTAGCTATA 1164 32 100.0 34 ................................ TGCTGATATTTTAAACGTAACCCGTAGTGAGATA 1230 32 100.0 34 ................................ CCCTTTGAAATTTTTTGCAAATTTTTGGTACAAA 1296 32 100.0 33 ................................ TGCTACAAGTGCTTTAACTAAAATTGATAATTG 1361 32 100.0 34 ................................ ATAGTGATAAATCGGCAACCATAATTTATCACTT 1427 32 100.0 34 ................................ AGGCGGCCTTTCACACAATGAATTATCAGAAATT 1493 32 100.0 34 ................................ CAGTACAGCCCCTCGGCGTTATACACCTCGGTCA 1559 32 100.0 33 ................................ TGCTGATGTTTCCGCGGATTGTGCTGAGACTTT 1624 32 100.0 34 ................................ ACAATGAAAAAAGTGACAATAAAGACTATAACAA 1690 32 100.0 33 ................................ ACGTGAAACATCTGAAAGTGGGGGTGATCTGGA 1755 32 100.0 34 ................................ TGCTGACGTTTCTGCGGATTGAGCTGATACTTTG 1821 32 100.0 34 ................................ CATCAATAACCACTTTGCTGCCCTGGATCTGCAC 1887 32 100.0 34 ................................ CTCATTTTTAATCATCCTTTCTGCCCCAGCCCAT 1953 32 100.0 34 ................................ ATCAAAAATCGGATAATCGTTCAGACCCAAATCG 2019 32 100.0 36 ................................ TGTACCACTAGGTTTTGTAGTTGCTGACGCTCCACT 2087 32 100.0 35 ................................ TCCTTTTAAAAAGGTCAGTTTCGGCTTTTTCCGGG 2154 32 100.0 34 ................................ CTAAATTGAGGTATAATTTGAATTGTATCACTGG 2220 32 100.0 33 ................................ AGCTCGCGAATCAATCAACTGTGCAATTGCTTC 2285 32 100.0 34 ................................ ATAAGTATATCGAGGTATGTTGAGGAAAATGGTA 2351 32 100.0 33 ................................ TCTCCGATTTCCCCGCTCTTAAACATCTTCTCG 2416 32 100.0 34 ................................ TGTTTATTTCATCCGCTCCCTGTCGGCGCGAATT 2482 32 100.0 33 ................................ ATCGAAAATGGGGTAATCATTCAGCCCCAAATC 2547 32 100.0 34 ................................ AAAATTGTACCAAATTTCCCCTTCGAAAATTTTT 2613 32 100.0 34 ................................ TGATATCTACCAATGCTCTACAATCTTCATTGGA 2679 32 100.0 34 ................................ CAAGATGTACTTGGGACTAAGCTGACAAATGCCC 2745 32 96.9 33 ...................C............ AGAACAAAATAATCCGGCAGATTACGTCCTACG 2810 32 87.5 34 ...G....T..T.......C............ ACCGGCAGGGACAAACGGAACGTGTTATCATCCA 2876 32 93.8 33 ...G....T....................... CATATAACACTTTATCTTCATCAATAAGTACTT 2941 32 100.0 34 ................................ GGCAGTTTCTGGTGCTTTTTCCTTTTCTTTTTTG 3007 32 90.6 0 ..........................A.CC.. | ========== ====== ====== ====== ================================ ==================================== ================== 46 32 99.3 34 GTCACTCCCTGCGTGGGAGTGTGGATTGAAAT # Left flank : GGATTGAAATATGACCAAAAATTCATCGTAATTTGCCGCCGTGTAG # Right flank : TATAGAATCCACACTGATAAACAAAATAAGGTAGACTGTCCGAAAGCGCTAGTAGCCAGGAAAACCATTAGCTGTAAGGCGGATTTACCATAAGAGGGGGATTAGCTTTGCTTGAATTTTAGATTGATTTATGAGGTTTTGTTTCAGATTGTGTGTGGATCATATTCATCAACATGAACGTCGCAGTTTTTGGGGCAGTACAGCAGATAGTATTGTCCATAGAGCTTGCGACATAATAGAGAACTACGGCTTTTTTAAGTGTATCCCCTTATGAGTGGTTGAGCTCATTGGATGTCTTTTCATCACGGTGCCTTCATTCATCATGATTATAGCGATATATGGCAGTTTTTTGAGCTACCTTACTGAAATTGCTGCGATCTGCTTTTGCAGGAGAGCAGAGCCAGAGTGTTGGAAAGCGTTTTAACAAGAATTATTTATTGTCTATCGGAGGGTGCTATTATTGTGCTTGTCTGTATTATCTTTTCTGTGTTTGCGGCTTA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTGCGTGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : NA // Array 2 4887-7376 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDBT01000026.1 Faecalicatena contorta strain D5-21 Scaffold25_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 4887 32 100.0 33 ................................ GATGTCTTCTGCTTGCCCAAAAACCATAACGTT 4952 32 100.0 34 ................................ CAACTGACAACCTCCGTGTGAGTCACAACATAAT 5018 32 100.0 34 ................................ TGATTATGCTTCTCAAAATGTTTATCTTAATGAC 5084 32 100.0 34 ................................ CGCATATTCTGGGCGTATGGTTTTCCATTTTAAT 5150 32 100.0 35 ................................ CTGTACAGTTGTAAATAAAATTGCATTAGAAAACG 5217 32 100.0 35 ................................ ATTACAAGACCCATTTTCAGAAAACTACGCAACAA 5284 32 100.0 35 ................................ GTACATAGATTGTCATGAAAACCACGAGTGGATTG 5351 32 100.0 34 ................................ AATCTTTCATTAATATGATTGCCTCGGCTTTAAA 5417 32 100.0 33 ................................ TCCGTCCCACTCATCCAACAGGGCTTTTACTGT 5482 32 100.0 33 ................................ TCAATTTCGCCGTTTTCTAACGCAATTTTATTT 5547 32 100.0 34 ................................ GATTTTGTTCTGAACGTAACCATAACGAGTAAAA 5613 32 100.0 33 ................................ ATGCTGAGTTTTTGGTTCTCGTCGCACACTATC 5678 32 100.0 34 ................................ AGATACAAACGGGGCGGGTTTATCCCGCTCCTTT 5744 32 100.0 34 ................................ TTCTATTGTATCGTTAAAATCTTCTTTTACTTCG 5810 32 100.0 34 ................................ TATGACTCTCGAAAAGTTTATTGAAAATGCTGAA 5876 32 100.0 35 ................................ CAATTGAAAAAAAATATTCTATGACTCTCGAAAAG 5943 32 100.0 34 ................................ ACCTCCTTTACCATAATTGCATAAACAACTCATC 6009 32 100.0 36 ................................ CCCGTATTCCAGCAAGCCTTTTTTAAATCCCGCCCA 6077 32 100.0 34 ................................ ATTGTGTGAAAGGCCGCCTGAACGTCTGGTATTC 6143 32 100.0 35 ................................ CTATTATGAATTTACACAAAATATAGAAACCTCAT 6210 32 100.0 34 ................................ ATTATAGAAAATGTACTAGTGTCCCCTGCATCGA 6276 32 100.0 38 ................................ TGTTCTGTTTCCGACGCATAAGTATATTTCCGGTTTGT 6346 32 100.0 34 ................................ TGCGGATGTCTCCGCGGATTGTGCTGAGACTTTG 6412 32 100.0 34 ................................ CCATTTGAGCGTTATCCCGTTTATGCCGTTAGCG 6478 32 100.0 34 ................................ TGCTGATGTTTCCGCGGATTGTGCTGAGACTTTG 6544 32 100.0 33 ................................ TATATAGCTGTACGGATAACTGTATAATTTAGA 6609 32 100.0 33 ................................ TTTTCGATGCTCAATTTATCTGCAATAAATGGG 6674 32 100.0 34 ................................ AGATACAAATGGGGCGGGTTTATCCCGCTCCTTT 6740 32 100.0 35 ................................ GTTGCAGTCCACGCCCCCACTAATACCCGGTACAC 6807 32 100.0 35 ................................ AGTCGATCCATGTAACCATAGCAAGGGGGCAGGGA 6874 32 100.0 34 ................................ AAAGCGATAAATTGGCAACCATAATTTATCGCTT 6940 32 100.0 40 ................................ GATTCCGGGATGCCCGTTTTAATTGCAAAGGGGTCTGACC 7012 32 100.0 34 ................................ TCATATTCCGCTGTTCGCACCATATTCGGGTTTG 7078 32 100.0 36 ................................ AGAAAACTACGCGACAACCTCACAAAAGACGAACGC 7146 32 100.0 35 ................................ CGTCTATATATTACTGGACGTATTGGACGAGGAGA 7213 32 100.0 35 ................................ ACCCTCAATTTTTTCTGAGCGATAAATCGGAAGCC 7280 32 96.9 33 ........................G....... CCCACAGAAGTTACGACCGAATGGAAAAGATAC 7345 32 68.8 0 ...........TA.CA..ACA..A.AC..... | ========== ====== ====== ====== ================================ ======================================== ================== 38 32 99.1 34 GTCACTCCCTGCGTGGGAGTGTGGATTGAAAT # Left flank : TCGTCACTCTATGCCAGGTGGCGTTTTTTCGTCAAGCAGTGGTTCCCTATATTGACTGATTACAGCTTGATATAGGGGCTTTTTTAAATTATTATCTGTTTTATTATTGATGAACAGAAACAGATGGACGGAGCTGTGTGTAAAATATAGGTACTTATAGGTGTATTTTTCACCGCAACGGCTACGGAGCTGAAGGCTCTGTCATAAAGTCTGTATTTATTTTTCGTATCCTGTAACATTATCTTATTATGTCAAGGCACTGATGTTTACCTACTTACGATGCGAGTAAAATGGTAAGAATATTATACGAATTATAAGGTGCGAATGCTAAGTGGACATAAATTTCCTGGGAGATTCGCACCAAATAAACGTGTAAATTGTAATATAAAATACAAAAGAAGTGGGGATTTGTGCGAAAAGAATTGTAATATCTAAGAGAATGGTATAAAATTTTAGGAGAAAAGCATAATTCTCTTGTGTGTAAATTGTGTGATTTTGCC # Right flank : TTTTTAATGTATATAATGGAGTTGAATGAAGCAGGACTATATTAGAAGCATTTTATTTAATTAGGGCAGTTCTAACAAAAAGAACCGTTTTTTCACTTATGTTCTAATTTGATTAGCGATATTATATATAGCTCAATAGACCCGAACATAATGTGTAATAGCAGAGAAATTGACTATCGGATAGAAGATTATATGAGTAAAGCATTTGAGTGTAATATGCTTACGTTAGAGCATCAGAGTTTTGTTTATAAAACTATTTGAAAAACAAACAAGAATAGTTTACGTAAACGTTCAATAGTGAATGCGTCCAATAAAGAAACTGCTCATAAGGATGGCATACACCCAATGTGTTATTAAAAGCAGATGATGCGTCAATAATTGTCAGGCATCATTTTGTTTAAATGAAAATAAATTAAGCTGGAGGGCCACTTTGAAAGAAAGATTAAAACAAGTAATGTCAGCAGAGGCGCATGTCATACAAAAGATGTCGGAGGAGATTG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTGCGTGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA //