Array 1 4030-2171 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOGR01000004.1 Klebsiella pneumoniae strain GM5 NODE_4_length_519458_cov_31.918819, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4029 28 100.0 33 ............................ CCACCCGAACACCGTGCAGCTCAACCTGAGCAC 3968 28 100.0 33 ............................ TTTGCAACAATATACCACTTCCCGACCTTTGAT 3907 28 100.0 33 ............................ TAGGTTTTTGTTGTCTGATTGAATGGGTTGTCA 3846 28 100.0 33 ............................ TGCTTCTATTAACCTGTTTCTGTAGCTTAAACC 3785 28 100.0 33 ............................ TGATGTGGGAGTGTGGTGTAAAAAACTCTCTTT 3724 28 100.0 33 ............................ TCTTATGCACGGTGTTGGATACGAACCACTCCA 3663 28 100.0 33 ............................ TACCCCATTTCTGTCTTTTGTAAGCTCCATCAC 3602 28 100.0 33 ............................ TATTAATGCTTACGTTTCGTGGTTTGAGGATGA 3541 28 100.0 33 ............................ CGTCGTGAATTACGGCAATACGCTGGACCGCAA 3480 28 100.0 33 ............................ CAGTACCGCCAGCAGCGCCTTGATGCCATGTGG 3419 28 100.0 33 ............................ TTAACTATGCAGCGTAACCGTGCTTTCGTCTCA 3358 28 100.0 33 ............................ CTGCAAAAGCAAAATGTTGCTCTGTCAGGTGCA 3297 28 100.0 33 ............................ TATCAATCTCTGAAATCATTTTGTCTATTTTGT 3236 28 100.0 33 ............................ CGCGACGACCTCGTCATCCTCCCCGCTGCGGCT 3175 28 100.0 33 ............................ TATCAATCTCTGAAATCATTTTGTCTATTTTGT 3114 28 100.0 33 ............................ CGCGACGACCTCGTCATCCTCCCCGCTGCGGCT 3053 28 100.0 33 ............................ TACACCCAGCTCTTTGACGCAAAGGCTCAGGAG 2992 28 100.0 33 ............................ TCCTTGGTTCGTTTCTTCTGATGTTTGCAAGGC G [2975] 2930 28 100.0 33 ............................ CTGGTTGACGTATGCCGTGATGCTGCTGGTAGG 2869 28 100.0 33 ............................ CATTCGAGTCAGTAAAAGCGTCTAGTGCTGACG 2808 28 100.0 33 ............................ CGCTGTATGCCCCCCATCCTTCGCAAGCACTAC 2747 28 100.0 33 ............................ CGATGACAACTTTGCCTACTTCGCTGCGCTGGC 2686 28 100.0 33 ............................ TTCCTCTTCTTCCTGACAATCAGCGCAGCGCTG 2625 28 100.0 33 ............................ TGCGGGTGGATGACAATAACGCCTGGCGCGCCG 2564 28 100.0 33 ............................ CCTGTTAAGGATGACGCGGGGAAATGGGTTATC 2503 28 100.0 33 ............................ TCGATGGCGAGCTGCTGGTGAAAAAGTCGATAC 2442 28 100.0 33 ............................ TCCAGGCCAGATCTGTTTGGGTTGGTGTCGAAG 2381 28 100.0 33 ............................ TGAAGGTGAGCGCCAAAAGGAGTGGAAGCATGC 2320 28 100.0 33 ............................ CGGCTGCGTTATCCGGCAGCACGAACTGGACCT 2259 28 100.0 33 ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT 2198 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 31 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCTTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGTTACAAATTGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13361-12783 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOGR01000004.1 Klebsiella pneumoniae strain GM5 NODE_4_length_519458_cov_31.918819, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 13360 28 96.4 33 .............A.............. TATGGGTTGCAGTGTAAGAGCGGCAAACGAAGC 13299 28 96.4 33 .............A.............. CGGCTCTTTTTTATCTCCTTCATCCTTCGCTAT 13238 28 100.0 33 ............................ TGATCGGCGTGCCGTTTGTTGGACCCGAAATAG 13177 28 100.0 33 ............................ CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 13116 28 100.0 33 ............................ TATCGTGCAGAGTCACAACCTGACGGGATTATC 13055 28 100.0 33 ............................ TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 12994 28 100.0 33 ............................ TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 12933 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [12924] 12871 28 92.9 33 ............T.T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 12810 28 89.3 0 ............T......A.......T | ========== ====== ====== ====== ============================ ================================= ================== 10 28 97.5 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACACACGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //