Array 1 8882-7471 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCCZ010000029.1 Flavobacterium psychrophilum strain 2501 contig00029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 8881 46 71.7 29 A.AA.T....A.ACC...CGGGT....................... TTTTGTTTTCGTCAAATTCCCCATTTGTG T [8877] 8805 46 100.0 30 .............................................. ATTAATGCGCTAATTATCGAAGGTAGCACT 8729 46 100.0 30 .............................................. AGGACGATTATAAATTTATGCTAAATATTA 8653 46 100.0 30 .............................................. AGATATATCTAATACTAGAGCGTACGACAG 8577 46 100.0 30 .............................................. AAAAACAATATCGAAAAACTGAAAGAGAAT 8501 46 100.0 30 .............................................. ATTTAATGTAATTGTACCCGAACCAGCTCC 8425 46 100.0 30 .............................................. TATATCCGTGTTTGAATACACATTGCCACC 8349 46 100.0 29 .............................................. CGTTTTCGCACGTGAAATCAAAGTACTAT 8274 46 100.0 30 .............................................. TTTTAAAAAATGGTTAAGTAGGAAAACTTA 8198 46 100.0 30 .............................................. TCCAGTAAGCGAGATGTCGTATATCAAAGT 8122 46 100.0 30 .............................................. AGCCAATGCCTTGTGTCCTGTTATGTGTTC 8046 46 100.0 30 .............................................. TAATAAGTTGCTCGTTTCCGTTTATTCCGT 7970 46 100.0 30 .............................................. AGTAGGTAATGTATTCACAATAGACACATT 7894 46 100.0 29 .............................................. AAAACGAAATACATACAGCGCACGCATTC 7819 46 97.8 30 ............................C................. AGGCACTTCTTTAGACTTAAATAAGTCTTT 7743 46 100.0 29 .............................................. AGTAATAGATGGGGGGTTTGAATGCCGTA 7668 46 100.0 30 .............................................. TCATCATCTGATGAAAATTGCTGTTCAATA 7592 46 100.0 30 .............................................. AAGCAAAATAAAATAAAAGAAATATTTAGC 7516 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 19 46 98.4 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : CAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTTTGCGGGATAGTGTCATCA # Right flank : ATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTATGTACTTCGGCATTTTCTCTGCTGGCACAAAATCGTATATAGATCGAAAACTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTAGGTAAGTCAAAAAAAACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCAA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 530-149 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCCZ010000062.1 Flavobacterium psychrophilum strain 2501 contig00062, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================= ================== 529 36 100.0 33 .................................... GCGTGCAAAAGACCCATCTCCAATAGTAGTCAC 460 36 100.0 33 .................................... ATCTGCAAAAGCCTCATCTCCAATAGTAGTCAC 391 36 97.2 33 ........A........................... ATCTGCAAAAGCCTGATCTCCAATAGTAGTCAC 322 36 100.0 33 .................................... ACTGAAAAAAGCACCATTTTCAATATCAGTCAC 253 36 97.2 33 ......................A............. GCCTACAAAAACATAATCTCCAATAGTAGTCAC 184 36 77.8 0 ............G..G..C.........TT.TTG.. | ========== ====== ====== ====== ==================================== ================================= ================== 6 36 95.4 33 AGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : TCA # Right flank : AATGTTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTTCTGCTGCTCCAGTAAAATTAGCGTTTCTAGCTACCTTAACAGTAAAAGGAGCTGTTGAAGAAGTAACAGTATAT # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 430-122 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCCZ010000067.1 Flavobacterium psychrophilum strain 2501 contig00067, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 429 32 100.0 37 ................................ CCAGAACAACCGGCAAAAGCACCTCGATTAATAGTAA 360 32 100.0 37 ................................ CCAGAACAATTGAAAAAAGCCTCATCTCCAATAGAGG 291 32 96.9 37 ......................A......... CCAGAACAGCCTCCAAAAACATAATCTCCAATAGAGG 222 32 90.6 37 .............G..G.....G......... TCAGGACAATCGGAAAAAGTATAATTTCCAATAGTAG 153 32 90.6 0 .......G.....G..G............... | ========== ====== ====== ====== ================================ ===================================== ================== 5 32 95.6 37 TCACAGAATTAGGAATTGTAACTGATGTTAAA # Left flank : | # Right flank : ATTATTGCAATCTTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTTCTGCTGCTCCAGTAAAATTAGCGTTTCTAGCTACCTTAA # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCACAGAATTAGGAATTGTAACTGATGTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.88%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //