Array 1 97-2879 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCFC010000140.1 Flavobacterium psychrophilum strain 9471 s contig00140, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 97 46 89.1 30 TGC.G...G..................................... AACCAAGTTCACAAGTACAAGACAAATTAT T,TC [101,106] 176 46 100.0 30 .............................................. AAAACAGAAGTGCAAATTAGCAAGGAAGTA 252 46 100.0 30 .............................................. TGGTTTGTTCCTTCGGATTTATGAGATGGT 328 46 100.0 30 .............................................. TAAAGAAGGTACTAACGTACCTGTGGGTTT 404 46 100.0 30 .............................................. ATATATTTGTACCATAAACAAACAAACTCA 480 46 100.0 30 .............................................. AAAATAAACCAAGCGTGTCAGACGATTTAG 556 46 100.0 30 .............................................. ATTGAATTAAAAATGCTTCAAGACACCGCT 632 46 100.0 30 .............................................. CCAAATGAATAACCAAACAACGTTGAACCT 708 46 100.0 30 .............................................. CTCACGCCTGAAGTTCTCATAGGCATTAAT 784 46 100.0 30 .............................................. TTACGAGCCAATTAACAGTAAAAAATACTA 860 46 100.0 29 .............................................. CCTCATTCCTGCTTCATCTGGATCCATAC 935 46 100.0 30 .............................................. AATATGCAACTTACGGATTGTTTCTTCGTC 1011 46 100.0 30 .............................................. ATTTGAATTATTATTTCAATCTGAAAGAGT 1087 46 100.0 29 .............................................. AATTTTCTAGTTCCGTTAATGCCTCTTTC 1162 46 100.0 30 .............................................. ATAGTTTAAAAAAAATATTTGCAAAACCAA 1238 46 100.0 30 .............................................. GAAGCGGTGGTTATTCCAGAAGTAAAGCCT 1314 46 100.0 30 .............................................. ATGGAGAGAATTACAAACCACACAAACCAA 1390 46 100.0 30 .............................................. CAACGCCAGCAAGCACAACACCAGCACCAC 1466 46 100.0 29 .............................................. ACGTTCAGAATTTCACAACAGAATTGTTG 1541 46 100.0 30 .............................................. GAACTTCTAAAAAAAGAAACAGAGTACATC 1617 46 100.0 30 .............................................. TCATTAACCGACACCGTTATATTTCCGCCA 1693 46 100.0 30 .............................................. TGTATGCTAAATACCAATCTGAGGGTTACA 1769 46 100.0 30 .............................................. TAGAGGCTAATGCGTGGCATGGTGCTACAG 1845 46 100.0 30 .............................................. TGACTGGGCAAAAGTAGCCGTAATAGACAC 1921 46 100.0 30 .............................................. TGATTTTCTTGAATATAGTATTTAGCACGT 1997 46 100.0 31 .............................................. GGAACCATATTTGTTATTAAATATGTATCAT 2074 46 100.0 30 .............................................. GCTAATATGTGGCTCCTTAATGGCACACGA 2150 46 100.0 30 .............................................. GCAAACCGAGTTAGAAATCGATTCGATGGT 2226 46 100.0 30 .............................................. GAGTTCTCAGTCATCTGTCTTTTGTCGCCA 2302 46 100.0 30 .............................................. GGCATAAAATGATTTATGAAGTCTATTTGA 2378 46 100.0 30 .............................................. ACGCCTGTCACTATGTCGTCGTATATTTCT 2454 46 100.0 30 .............................................. ATTTCATCTATTTGCCTTAACTCACTATCA 2530 46 100.0 30 .............................................. TTACAAAAGCAGAAGAATCTGATTCTTTAT 2606 46 100.0 30 .............................................. GGTTTGCTTGAGCAGTTCTTCTCTGTGAAC 2682 46 100.0 30 .............................................. TTAATTCTGCGAATGGATTATGCCGAATTC 2758 46 100.0 30 .............................................. AAAATTCAGATTTCAATGAGTACATTTTTT 2834 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =============================== ================== 37 46 99.7 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : ACAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTTT # Right flank : ATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1897-1442 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCFC010000171.1 Flavobacterium psychrophilum strain 9471 s contig00171, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ================================== ================== 1896 38 100.0 31 ...................................... ATCTGCAAAAGCCTCATCTCCAATAGTAGTC 1827 38 100.0 31 ...................................... GCGTGCAAAAGACTCATCTCCAATAGTAGTC 1758 38 100.0 31 ...................................... ACTGAAAAAAGCACCATTTTCAATATCAGTC 1689 38 100.0 31 ...................................... AGCTGAAAAAACACCCCTTCTAATAGTAGTT 1620 38 94.7 31 ...................T....A............. GCCTGCAAAAGACCCTTCTCCGATAGTAGTC 1551 38 97.4 34 ............................G......... TCTATCAAAAGCAGCATCTCCGATAGATGTAACG 1479 38 76.3 0 GT.TTG.....G.......T..........TT...... | ========== ====== ====== ====== ====================================== ================================== ================== 7 38 95.5 32 ACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : AGT # Right flank : AAGCGCAAAAGCATTCTCTCCGATAGATCTAACGAAATTCCCAACGTTAACCGACGTTAAACCTTGACAGGAAAAAAACGCAGATTCTCCAATAGCAGTCACAATATAGTTTTCTGAATTATAAGTTACTATTTCTGGTATTACCGCAACTCCACTAAAATCAGGGTTTCTAGCCACCTTAGCAGTAAAGGGAGCTTCTGAAGAAGTAATGGTATATCTTATATGGTTTGCTGTAAAATCTTGTGCTATTCCTAAAAAAGGAATTAAAATGACAAATAATAATTTTTTCATGTTTTTTGTTTTTAATTATTGTATAATAATTGTTTTTGTTGCCTTACCTTGGTTTGTCATTACTTCTACAAAGTAATTTCCTTTTGCAAAGCTTGAAACATTTATTTCTGAATGATTAGTTGTTTTTATTAACTGCCCTAATGTGTTGTAAAAATTCACTTTTTCTAATTGTAAGCCCTCTTGCAAGGCTATGTTTAAAATTTCTGAAA # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 116-1752 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCFC010000174.1 Flavobacterium psychrophilum strain 9471 s contig00174, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 116 46 69.6 29 TAAT.T....A.ACC...CGGGT....................... TTTTGTTTTCGTCAAATTCCCCATTTGTG 191 46 100.0 30 .............................................. ATTAATGCGCTAATTATCGAAGGTAGCACT 267 46 100.0 30 .............................................. AGGACGATTATAAATTTATGCTAAATATTA 343 46 100.0 30 .............................................. AGATATATCTAATACTAGAGCGTACGACAG 419 46 100.0 30 .............................................. AAAAACAATATCGAAAAACTGAAAGAGAAT 495 46 100.0 30 .............................................. ATTTAATGTAATTGTACCCGAACCAGCTCC 571 46 100.0 30 .............................................. TATATCCGTGTTTGAATACACATTGCCACC 647 46 100.0 29 .............................................. CGTTTTCGCACGTGAAATCAAAGTACTAT 722 46 100.0 30 .............................................. TTTTAAAAAATGGTTAAGTAGGAAAACTTA 798 46 100.0 30 .............................................. TCCAGTAAGCGAGATGTCGTATATCAAAGT 874 46 100.0 30 .............................................. AGCCAATGCCTTGTGTCCTGTTATGTGTTC 950 46 100.0 30 .............................................. AAAAGATTTAGCAACATAGATGATTGTTTT 1026 46 100.0 29 .............................................. TTTTACTTTTTATTTAAAGCAACTGTAAT 1101 46 100.0 30 .............................................. TAATAAGTTGCTCGTTTCCGTTTATTCCGT 1177 46 100.0 30 .............................................. AGTAGGTAATGTATTCACAATAGACACATT 1253 46 100.0 29 .............................................. AAAACGAAATACATACAGCGCACGCATTC 1328 46 97.8 30 ............................C................. AGGCACTTCTTTAGACTTAAATAAGTCTTT 1404 46 100.0 29 .............................................. AGTAATAGATGGGGGGTTTGAATGCCGTA 1479 46 100.0 30 .............................................. TCATCATCTGATGAAAATTGCTGTTCAATA 1555 46 100.0 30 .............................................. AAGCAAAATAAAATAAAAGAAATATTTAGC 1631 46 100.0 30 .............................................. GTTAAATACCGCAATGACCGCAAACCCTAT 1707 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 22 46 98.5 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : CAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTTTGCGGGATAGTGTCATCAAAT # Right flank : ATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 444-127 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCFC010000341.1 Flavobacterium psychrophilum strain 9471 s contig00341, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ============================ ================== 443 41 100.0 28 ......................................... CTGAAAAAAGCACCATTTTCAATATCAG 374 41 100.0 28 ......................................... TCTGCAAAAGCATTCTCTCGAATAGTAG 305 41 97.6 28 .................................T....... CCGCCAAAAGCACCTCGATTAATAGTAA 236 41 97.6 28 ....................................G.... TCTGCAAAAACATAATCTCCAATAGTAG 167 41 78.0 0 ................G..G..C.........TT.TTG..T | ========== ====== ====== ====== ========================================= ============================ ================== 5 41 94.6 28 TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAA # Left flank : | # Right flank : TTGTATAAAAGCAGATTCTCCAATAGCAGTCACAATATAGTTTTTTGAATTATAAGTTACTATTTCTGGTATTTCTGCTGCTCCAGTAAAATTAGCGTTTCTAGCTACCTTAACAGTAAAAGGAGCT # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 1-248 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCFC010000376.1 Flavobacterium psychrophilum strain 9471 s contig00376, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ============================ ================== 1 41 100.0 28 ......................................... ATCTGCAAAAGCCTCATCTCCAATAGTA 70 41 100.0 28 ......................................... CCTGAGAAAAGCACCATGTTCAATATCA 139 41 97.6 28 ...........................A............. GCCAAAAAAAGCAAAATTTTCAATAGCA 208 41 82.9 0 .................A.....C.........TT.TTG.. | ========== ====== ====== ====== ========================================= ============================ ================== 4 41 95.1 28 GTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : | # Right flank : ATGTTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTT # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //