Array 1 138026-138773 **** Predicted by CRISPRDetect 2.4 *** >NZ_SITI01000123.1 Hafnia alvei strain PCM_1209 1298, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 138026 28 100.0 32 ............................ ATCCCAAAAATGATTTGCACAAACATAAAGGC 138086 28 100.0 32 ............................ AATCGCTGAAAGGATTGAAGTTCACACAAACA 138146 28 100.0 32 ............................ GCATAACATTGCTATTCTTGGTACATCCGCAG 138206 28 100.0 32 ............................ CGCAAACTAGCCCTACAGATAAAAATCACGGC 138266 28 100.0 32 ............................ TTTGTGCGGGTTAAAGCAGCACCATGCGGGGA 138326 28 100.0 32 ............................ ACAAACACGATTCTAAAGCGTTTTTATAAAAC 138386 28 100.0 32 ............................ ACTGATGCTTCTTGTGTCATATCATTCTGATT 138446 28 100.0 32 ............................ TGTGAGGCTAGCGTATAGACAGCGTTCAAGAT 138506 28 100.0 32 ............................ AGGCACATGGAGAATACAAACAGCCAGTCTAG 138566 28 100.0 32 ............................ AACAATTGGTGAAGTTGCCGAATTAATGGGAT 138626 28 100.0 32 ............................ TCTGCGGGATGCATTGAGACAGTCACCGGCAT 138686 28 100.0 32 ............................ TTTAAACAACGGCTCTATCCCGGATGGACGAA 138746 28 67.9 0 .C.......T.......T..A.A.TTCC | ========== ====== ====== ====== ============================ ================================ ================== 13 28 97.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGATTTGATTGGGATACGCTTGGCCCCGTATTAGGCAAGGTGTATGAGGAGATCGACGAAGTGATGGATGAAGCGCAGCAGGCGGTGGTGGATGAGGAAAAGCTAGGCGAAGAAATTGGCGATCTGCTGTTTGCAACGGTGAATTTATCGCGTCACTTAGGCCATAAAGCTGAAAACGCCCTACAGGCAGCCAACCGCAAATTTGAACGTCGTTTCCGTGCAGTAGAAGATGCAGTGCGCGCCTCGGGCAAAACCATGGAAGAAGCCACGCTTGACGAAATGGAAGCGCATTGGCAGCAGGTGAAAAAGGCTGAAGGTAAATAGTCAAAATCGCGTTGGTTAAAGTGAAAAGGGCTGACGTGCTGCGTTAGCCTTTTTTTTCTGCCTACTAGTAACTGATTGATTTTAAACAGGCTGAGAATAACGCGCAGAAAAAGGGTATTTTGAATTTATTGCGCGAAATCGCTTTATTTTCACTCAGCTAGTCATAAAATCCAGCA # Right flank : CTCGCCACTCTATTTTTTACCATCTGGTTGCAAAATTCCTCGTGTGCCTAGTAGAAACAGCAACGTCATTAGTGCCATAGCCAGTAGACCTGCTTGGCTAACACGGGCTCGAGATTGTTGGTAAAGCTTGGTGATAGTGGGTAAGTCTTGTTTGGTTGCTCCAGACTGCACTAACAGGTTGCTGAATCCTTGATCGCTGAGATAGGGAAACACGGTCATATTTTGTATGGTAATGCGGGTCTGAGGTGTGACGGTGATGTCTGCGGCGATGTTGTTGAGGGCTGAAGATGAAGTTGTGATGGAAAACCCCTGCTATTGGGCTGCTGCCGGGGCATTCTCATGTTTAGGGGTGCACATTAACGCCGTAGGCGTTGATGACGATGGGCTACTAACGCATCAGCTCGCGCAGATCCCTAAAGCTAAAATGGCCTATGTATGCCCCTCTTGCCAATATCCAACGGGGGTCACCATGTCATTGCCCCGTCGATTAGAACTGCTGA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 152727-153114 **** Predicted by CRISPRDetect 2.4 *** >NZ_SITI01000127.1 Hafnia alvei strain PCM_1209 1302, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 152727 28 100.0 33 ............................ TGCCAGCTGAGTCTGAAAATATTTTTTGCTCAA 152788 28 100.0 32 ............................ GCCGTTACGATTCACTGTTCCGGTTTCGTTTA 152848 28 100.0 32 ............................ ATCGCAGGCCGCGACACTGAAATTTACGACGC 152908 28 100.0 32 ............................ ATTTGCTGGGACGGCGGTATTAACTAGCGTTC 152968 28 100.0 32 ............................ CGACGGACAGATCATTAAGTGCGGTAACTTCA 153028 28 100.0 31 ............................ GTGTTGCGCACACCCTGTGCCAGTTCGCGAA 153087 28 78.6 0 ...........C.........CA.A.CT | ========== ====== ====== ====== ============================ ================================= ================== 7 28 96.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTGACTTTCACTGGCAAGGTGCGCAACCATAATCTTGGCGATAACGTCAGCGCATTGACCTTAGAGCACTATCCTGGGATGACAGAAAAAGCGTTAAATGAAATTGTGGCAGAAGCCCGTTCGCGCTGGCCTCTACAGCGTATTTCGCTGATCCACCGCATTGGCGCCATGTATCCCGGCGATGAAATTGTATTCGTTGGCGTGACCAGCGCACATCGCAGCATGGCCTTTGATGCCGCCGAGTTCATTATGGACTACCTCAAAACCCGCGCGCCATTCTGGAAACGAGAAGCCACCGAGCAGGGCGACCGCTGGGTCGACGCCCGCGACAGTGACCAACAAGCGGCAAAACGCTGGTAAGTTCTTTCAACCCTTTTTTCTGCCCTCACGATAACTCATTGATTTTTCACTCCTCCAATGAACCGTAAGAAAAAAGGGTTAAATTCCCCAAAATGAGCTACCGATCTGATTAATCGACGCTTTCTGCGAATATCCTACA # Right flank : TATCTTCTGCCTCATTTTCACTATACTTATTTCAGCGCTGCACCTTTATTGCAGTATTCGAGCTAACTTTCGCTGAGGTAAGGGGCTAATTTGATTTGGTTTGAGCAAGGTCTTTATTTGCGGGTTGAGGAGTTGGAAAATGGGCCACGGCCTTTGCCGCTGCGTAGCGGGTTTAGTCGTGAAATAGCCTATCGGGCGCTAGGCGTGTTTAATCCCTCTGAATCATCGGATGCTTACTACATATTATCTAACGATCGGGATGAAATATGGTTTATCTGCAATCGACACCTGCGAACGGTTGCGCTTTTACCTGATACCACCGACTTTAGGCGTCCGATTGTCTATTGAGTATGGGTGTGGTTGTAGTAATTTTATCTGTTTTAATTTGGATATAACTTTTTGTTAAGGACTTTAACGATACAAAAACTGCTCATTGTCACCTTGTACCCGAGTTATTTTCCACCCATCCTGCCAGACGAGCCAGAGAATGAGATGTTGCT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //