Array 1 147862-149171 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNPN01000001.1 Escherichia coli 2-177-06_S4_C2 e217706S4C2.contig.0_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 147862 29 96.6 32 ....C........................ ACGGTCGAATTAACCTGTAATTTATATCTGGT 147923 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 147984 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 148045 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 148106 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 148167 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 148228 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 148289 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 148350 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAAGGG 148411 29 89.7 32 ....C...........G........C... CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 148472 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 148533 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 148594 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 148655 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 148716 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 148777 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 148838 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 148899 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 148960 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 149021 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 149082 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 149143 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTTATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 174871-175935 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNPN01000001.1 Escherichia coli 2-177-06_S4_C2 e217706S4C2.contig.0_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 174871 29 100.0 32 ............................. GCCACGATCGGCGATCTGGTTTACGCGTTGCT 174932 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 174993 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 175054 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 175115 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 175176 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 175237 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 175298 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 175359 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 175420 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 175481 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 175542 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 175603 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 175663 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 175724 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 175785 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 175846 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 175907 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //