Array 1 15372-14488 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUAU01000037.1 Lactobacillus crispatus strain NCK2487 NODE_37_length_15397_cov_47.129383, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15371 29 100.0 32 ............................. GAACGACGGTATGAAAGACAAAACTACTACTC 15310 29 96.6 32 ............................C ATTCTTATGTGATTTCTTTGATTCTCGAGGAG 15249 29 96.6 32 ............................C AGAATTGCTAAAGGTAGAAAAGTGATAGACAT 15188 29 100.0 32 ............................. CAACCGCAACCGCGTCAATGTTCTTGTATTCG 15127 29 100.0 32 ............................. GATATTCTTGTGGTAATTGGTGTACCTGTTGA 15066 29 96.6 32 ............................C GTATGGGTAAATTTGATCTGTCAGATCGTCTA 15005 29 100.0 32 ............................. TATCCGCATCTGTGAGCATTTTAGTCCCATTA 14944 29 96.6 32 ............................C CATTAACATTCGATTTTATTTCATCTGTTAAG 14883 29 100.0 32 ............................. ATGACGACAGTAAAAAATCCACCACGAACAGT 14822 29 100.0 32 ............................. AGTCCTTCATAAAGACCACTTACAAAGTCGTC 14761 29 96.6 32 ............................A ATACAGGCTTGTGCACCAATAGCAGCGCCAAG 14700 29 100.0 32 ............................. GGTTTGCTTTTACGTAAGACTGACCCAGCTAC 14639 29 100.0 32 ............................. CTTCAAACCGATAACCCTCGGACCATCTAGCA 14578 29 96.6 32 ........................C.... ATGCAGAGTGGCGTGCATGTCATGATTACAGG 14517 29 82.8 0 ..G..........A...........AA.A | C [14492] ========== ====== ====== ====== ============================= ================================ ================== 15 29 97.5 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : TGTTGTTATATTGGGATTTGTTTAC # Right flank : GCAGTCTTTTTGTACTATAGACTATTTATGATACTATGATATCTTCATCAGAATATCTATAAAAAATGAATTTTAAATACTAAAGGAGTCATGATATGGCACGTGAACTAAAAGAAGTTCAGGGTATTATCTTTAAAAGGCAGAAATATAAAGAAGCAGATTTATTAGCCAAAATTATGACTAAACAAGATGGAATTATGACTCTGATTGTTAAAGGAGCCCTGAGGCCTAAATCAAGATTAAGTGCAGCAACATTAAATTTTTCTATTGGTACTTACGTAATTTATACGAGCGGAAAGGGCTTAAGTAATTTACGCACATATAAAGAGGCAAGGCAGTTTGATGGCTTATATAATGATTTAACCAAGAACGCTTATATTTCTTTTATTTTTGATTTAATTGATCACGCCTTTGTAGAATATCAGCCAATTGGTAAATATTATGATTTAGCTTTATTTGCTTTGAAAAAAATAGATAGTGGCGTTGATGCAGAAATGATT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15729-16182 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUAU01000032.1 Lactobacillus crispatus strain NCK2487 NODE_32_length_20222_cov_38.838697, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15729 28 100.0 33 ............................ CACTGGACCTTGGTCCAACTTCAATAGCTACAA 15790 28 100.0 33 ............................ TACGTTTGTAGGACGCACCACGTCAATAGTGAA 15851 28 100.0 33 ............................ TGATTTTGCAGGAATTGTTCTTGATATTGGGAA 15912 28 100.0 33 ............................ CGCCAGAGGATTTGTTCTCCACCGCTACGGTTG 15973 28 100.0 33 ............................ CAATTTCTTCCTTCGACATGTCCTTAAGAGCAT 16034 28 89.3 33 ...........ACA.............. TGACAGCTCTGCTGTAGTGATCGAATCAGACAA 16095 28 89.3 32 ...........ACA.............. TCCGACGGGGTACCCCGCGGCTGTCCATCATC 16155 28 71.4 0 ...........ACA........CT.AAT | ========== ====== ====== ====== ============================ ================================= ================== 8 28 93.7 33 GTATTCTCCACGAGTGTGGAGGTGATCC # Left flank : GTTTACACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCACCCACAGCATATTATCGATGGAATTCAGAATCGAATGCATCGTGGAATCACTATTTTGCACGATGCTGAAGGTGCATATAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGTCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGATTTATAAATGAAATTTGAATCCTAGGGGCACTTTGGGAGCAAAACTATTCAAAAAGAAGCAGAAATGCTTCTTTTTTATTTGGAGTGGCTTTTTGTAATTATGGCTTTATTATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGAGATGTTGATATATCGTGGATCATTTAGT # Right flank : TAGCTGCTCTGAAAAATATGTTCTATAGAGTGACTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCCTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGAGAATCGGAGCTAAGAGGTGACAAATATGCCGAAAGCCCATAAAATTAACTCATACTGGCAAAAATACTAAATGGTCATTAAAGT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGAGTGTGGAGGTGATCC # Alternate repeat : GTATTCTCCACACATGTGGAGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 18731-20222 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUAU01000032.1 Lactobacillus crispatus strain NCK2487 NODE_32_length_20222_cov_38.838697, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18731 29 100.0 32 ............................. AATATCTGCTTGTGAATTTAAGATGATATCTT 18792 29 100.0 32 ............................. GTTGGATTAATTTTGTAAGTCGGATCTTTAGG 18853 29 96.6 32 ............................C CAGCAGCCTCTAATTCTTCAAGACCAGTCATT 18914 29 96.6 32 ............................C CCAACTTACCAATTTTGCTAAAGGTATCATGA 18975 29 100.0 32 ............................. CACCTTGGCACTTTAAAGCAAACAATGTATCA 19036 29 96.6 32 ............................C TTTAAGCTACCTAAGTCGGAAAATCCAACGTT 19097 29 100.0 32 ............................. GATGTAGCACTGCCGTGGCTCTTCAAGATACG 19158 29 100.0 32 ............................. CTTAGACCGCCACCAGTGGTCTTTTTTGTAGA 19219 29 100.0 32 ............................. CATATTTCCGGTGTTAATTGCTAATGTTTCTG 19280 29 100.0 32 ............................. CAGGAAAACTATTATCCAAGCACCAAAATTGC 19341 29 100.0 32 ............................. AAAGGCTAGCCGTTGTGGGTTTTCATTTTCCC 19402 29 100.0 32 ............................. ATACCAAGCCGAGCATCAATGTGCCGATACAA 19463 29 96.6 32 ............................C GGGTTTTTGACTTGATAGGATAGCGCGTGTAT 19524 29 100.0 32 ............................. GAACAAACCAAACACTAGAATTTTAGATTATG 19585 29 100.0 32 ............................. AGCGTAACTGTTTACAAGACCGAAAAAGGATA 19646 29 96.6 32 ............................C CTTCAATAGATACATTCATAACGCTTACTACT 19707 29 100.0 32 ............................. TCTGATATCAGTCATTATTTATTCTCCTTCTT 19768 29 100.0 32 ............................. ATAAAATTATTAAACCAAGCAAGGAACAGGCA 19829 29 96.6 32 ............................C AAATTAGCGAACTAACAGCAAGCGATTTTACA 19890 29 100.0 32 ............................. GGGGCGGCTAACTTTATTGTGGTACACAATCA 19951 29 100.0 32 ............................. GATTCTAGCGATTCAATTTTACGAGCGGGTAA 20012 29 100.0 32 ............................. AAAGTTGACATTTGTGAAATACGTGAACGGTA 20073 29 100.0 32 ............................. GGAAAAGGCTTTAATAATTGATGCTTTAGGTA 20134 29 100.0 32 ............................. AGTTCTTTGCCTTGCGAATGCGCTCATACTCT 20195 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.0 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGTTCTGATTTTTATCTCCTCTCTTAATTCACCTAAGCTATTGTAGCTCAGCAGTTTTACGAGAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATAGGTATATGTGAATATGCTTTTGGTTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGCAAGAAAGATTGGCAGACAAATAATATTTTTCTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCTAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : | # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28-915 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUAU01000066.1 Lactobacillus crispatus strain NCK2487 NODE_66_length_6134_cov_38.886988, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 28 29 100.0 32 ............................. ACACAATTGCAACAACAAAATGACAATTTGCA 89 29 96.6 32 ............................T GATCAACAAATTTGTCATTCATAGCTAGTTCT 150 29 96.6 32 ............................T CGAGTCACCAGCAATGAACATTTGATTATGTG 211 29 100.0 33 ............................. ATTCCGGCTCTATTGATGAACAACGTGGACGAT 273 29 96.6 32 ............................T ACCAAAACGGCAAAATACTTGTTTAACCACAG 334 29 100.0 33 ............................. ATATCCATATCATATGCTAAAGTCACACTCTTA 396 29 100.0 32 ............................. AGTAGCCTTGTATACCCAAGCTTCAGTTTGAC 457 29 100.0 32 ............................. TAAAACCGCGGCTTTGAGAGATATGGGTTTAT 518 29 100.0 33 ............................. ATCAAACAAACTTTCATCTTTACCAATCACGTA 580 29 96.6 32 ............................T GAAATTCGTAACCGTTGTTCTATGGAGGGATC 641 29 96.6 32 ............................T TACCACTTAAATCATCACCCATTTCAATTACA 702 29 86.2 32 A..........AC...............T AGTGCAAGTGACATGACAACAGTAAACATGCT 763 29 86.2 33 A..........AC...............T ATCTTTCTTTTGTTTTTTAGTTACGTGTGTGTA 825 29 93.1 32 ...........AC................ AATCTAGTTTATGATACAATAAACACAGATAT 886 29 79.3 0 ...........AC....T......T.A.T | A [907] ========== ====== ====== ====== ============================= ================================= ================== 15 29 95.2 32 GTATTCTCCACGTATGTGGAGGTGATCCC # Left flank : TTTGCCTTGCGAATGCGCTCATACTCTG # Right flank : TGTCCTTGAGCGCACAGATAAATAGCCTGTAAACGCCGGTATGCCAGTATTTTTGATAGATGAAAAGTGTACTAATTCCTCTTTTGGTGATTGGAATTAGTACACTTTTTGCTTGTTGAGCTAGAGGGTCGAGTGGATAACGTGCTGGATTTTTAGGTTGTATAGATAAGTGCCCGTTTTGGGGAGTTGAGTTGGTTAAGTTGATGAGAGAAGCAGTAATGGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAAAGATTTAATCAATTTTTGTAAAATGCTTTTATGCTAGATTTATATCGCAATAATCAAATGGAAGGATGAGAAATATGGTTGACTATATTGCAAAAATTAAACCAATAAATGCGGATAAAATTGAAACACAGGCGCATGGAATAGCAACATTCAGTGAAAATGGTAATAGCCTTCATATTCATGTGGAAATGTTTGATACGCCTGCCAATATTGAACATTGGGAAC # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //