Array 1 138884-135694 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUU01000001.1 Thermococcus sp. 18S1 NODE_1_length_1989976_cov_34.486576, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 138883 30 100.0 36 .............................. TTTGAGTAGCTCCACGCTATCCGTAACGCTCACCGC 138817 30 100.0 38 .............................. CTTTTCTTTCATCTCCTCCTCGCGGTGCAGTCATAACC 138749 30 100.0 38 .............................. CAAAGTAAACGTGGGGTTCTAACTGGCCCCAGTGAATC 138681 30 100.0 36 .............................. TTCACCGTCGAGGCCTGGACGTATGAGCTAATAGCC 138615 30 100.0 35 .............................. TTAGTTTTAAGTTTAAGGCAGTCAAAAGGGCGTAC 138550 30 100.0 37 .............................. GGACAATATTAGACCGCTGGACAACATCCGGTTCAAC 138483 30 100.0 38 .............................. GCGTAATGGTGATAAACTCCTGCGTTATCCTGCCGTCA 138415 30 100.0 37 .............................. CGGTAGCCTGTTCGGCATGATAATCGACGGGCTTTCA 138348 30 100.0 36 .............................. GATTGATGCCGTCGCCCGCCCCGAGGATTATAACGC 138282 30 100.0 37 .............................. TGCTTTTGAGGTCCTGAGAGGTCGTCTTTGTCGGGAT 138215 30 100.0 38 .............................. TTGTTTTCTATGATGGGGGGGTCGGTGCTGATAACTAA 138147 30 100.0 37 .............................. GTTGAGGAGTAGTCGCCGCTGTACCTGCCAGGGCCGA 138080 30 100.0 37 .............................. CGAGGGCCGAGGCAACGAGAGTGGCTGGAGTAACTGT 138013 30 100.0 38 .............................. TCGTTGGAGTGATGTCCGTCCTGTCCTCATGGTCCTTT 137945 30 100.0 36 .............................. AGCCATAGCTCCTATCAACACCCACGCCAACGCCAT 137879 30 100.0 37 .............................. AATACCAGAGTAGTACTCACGGATGAACAGATGGAAC 137812 30 100.0 37 .............................. CGCGGATCGCCAAAGTAGTATTATCAACATACCAGCC 137745 30 100.0 37 .............................. GGGTACTCTTGACGTGCAGGTTGAAACTCAGACCCAG 137678 30 100.0 36 .............................. TATTAAACCTATCAATCGTTTACTATGATAGTAAAC 137612 30 100.0 37 .............................. TCGAGGAGGTCGAGACGAAAATCGAGGATACTCTCGG 137545 30 100.0 36 .............................. AGGGATAAGGTCCCCGTCGTAGAGGGGAGTAAATTA 137479 30 100.0 36 .............................. GAGACCGACGGGAAGGACCCACTACTCGCGAGTATC 137413 30 100.0 38 .............................. GTTCGCGCGCTTCTTCCATGAAGCTCTGCACCGTGTAG 137345 30 100.0 40 .............................. GAGGTAAAGGTCGAGGTAGCGGATGCCCTGTTCCTTGAGC 137275 30 100.0 38 .............................. GAAGAGGCCCCGGCTAGATTTGCAAAAGCGGTTGTCCA 137207 30 100.0 37 .............................. CCACTTCTCACGTCAGAGTATGGCCCTTATAATACAC 137140 30 100.0 37 .............................. TTTTCATAGACCCCTATGAAAAAGCCGCCGCTATGGG 137073 30 100.0 39 .............................. ACATTGTCTGACGTTACACATATTTACAGAAGCTCTAAA 137004 30 100.0 37 .............................. GTCTTTCACCGTCGAGATGAAGAGCGGGCTCACCAAA 136937 30 100.0 38 .............................. GGACTACGCAGCCCAACGTGGTTATGAAGTCGTCAGGA 136869 30 100.0 37 .............................. GACTGAGCAAGAAGGCAACACCATCGAGGGACTGATT 136802 30 100.0 39 .............................. CTTCGCTTTGTTCGTCGGCGTAAATCTCCCGCCATTCAA 136733 30 100.0 36 .............................. TCCCGTACTCCCACGGGTGTTCGGGCACTATTCCCA 136667 30 100.0 42 .............................. TCGTAAAAATGTTAAAATCAGATGTTGGAGGGGGTATGACAA 136595 30 100.0 36 .............................. CTTTACGAGGCTGGCCTGCCGGCGGCTCTTCTTTAT 136529 30 100.0 40 .............................. ACAAGAGACCTTCATTACATTGCATTGGACTCTGGTCCAC 136459 30 100.0 37 .............................. CATGATAACAACAAGCGCGGAGACCTTCGCGAGGGCC 136392 30 96.7 37 ................A............. CTGAAGATTCAGCTGCGCAGGGTCCAGGGCGTGAAGG 136325 30 96.7 37 ................A............. CAGGAAACCGAACTCGTGCAGAGGCTCTTAGGGCTTG 136258 30 96.7 37 ................A............. TTTTTTTGTGTGGGTGTGTCGGGGCCTTATGGTCCCG 136191 30 96.7 37 ................A............. GAGGGTCGCGAGGGCGATGCGGGCTGCAATGCAGTTC 136124 30 96.7 37 ................A............. GGTGCCCAGCTTAAGGCCAATCTCCTTTGCCTTCTCG 136057 30 96.7 35 ................A............. CGGGAATCACGGCGATAACCACCGCGATTGTTACC 135992 30 96.7 37 ................A............. CAAGGGTGAGGTTGTTGATGCTTTGGAGCTTGAGAAT 135925 30 96.7 38 ................A............. GACACGGGCGGCTGGTTCGACCTTAGTGGTGTGCTTGA 135857 30 96.7 36 ................A............. AGAGATTTGGAAGCGAAACTTCAAAGTCTCGTGAGT 135791 30 100.0 37 .............................. TGAGGGACTGGTCGCTTCTCCGCGTCCGCGCTCTTGA 135724 30 83.3 0 .........C...C.CC.......C..... | A [135707] ========== ====== ====== ====== ============================== ========================================== ================== 48 30 99.0 37 GTTGCAATAAGACTCTGGGAGAATTGAAAG # Left flank : ATCTGGAAGTTGAGGGAGCTCGGGTTTGAGGTCCTATCACGCTGAGGTTTCGCCGTTCTAAGTTTTCTCTGCCATAACTCCCGGAATTTTGAAAAGCCCTTTTCCCCACTCTCTGGAAGGTGATTATTTGAGGCCAGAAACTGTGCCCACATGTTACTGTTATGCCAAGTCACTATAACGAAAATTTTTCGAAGATTGAAATACCGGCGACACGGGGGCGGGAACATGGATATTTCCACCATAAGCGAGTCTTTTCCAGTCTATGGAGGGTTTCTCAGCCTGTTTTAAATTCCGAGCCCTTTGAAGTCCGGGGAAATCTCATGCACATCTTTGTTCGCCCGAGAATTGCAGCCGTTTCATCCGCCCGATAGCTCAACGGGCTCACCTAGTTGCCAGAATTGAGCGCCTGTCGCTGTTCTCCTAACGGGGACTTCCAGAAATGCTTAAATATCGGAAGTTCCTCAAAGCTTTACTGGGCAAAGCGGGGGAAATTCCCGCCT # Right flank : ACCGGGAAACATCAAGAAGATTTGCTACTCACAGGAACTCCCCGAACAGGAGGTCCTCCCTCGTTCCACCCGCCTTCCTGAATACTCTCTCGCTCCAGGAAACGCCGCCCACCTCCCCAGGGGAGTGGGCATCGCTCGCGAAGGTGAGCTTTATCCCGCGCCTTATGCACTCACGGATGAAGTCGATGTCCGGTACCCGGTAGCGGGAGCTTATCTCAAAGGCCTTGCCCCCAGCCTCCGCCAGCTCGAGTATTTCCTCCAGCTCGTTGGCGGACGGGAAGCCGATGTAGGGGAAGCTGGCCCCGAAGTGGCCGATGATGTCAACGTTGTCGTCTTCGAGGGCGAGCTTCACCAGTTCCACGTATTCCTCCGGCCTCTCTAGCCACTCGTGGACGCTCGCTATCACGTAGTCGAGCTTCTCCGCCATGAAGTCCGGGACATCGACGCCCCCAGGAGTTATGTTGCCCTCCACCCCGGCCAGAATCGTCAGCTCCGCGTCC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTGGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 1293666-1287313 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUU01000001.1 Thermococcus sp. 18S1 NODE_1_length_1989976_cov_34.486576, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 1293665 30 100.0 38 .............................. GTGGATTAAATACTCGTCTGGAACCGCCGCCTCTGGTC 1293597 30 100.0 36 .............................. GATATCGATACCTCTAACAAATGGTTAGAATTTGAG 1293531 30 100.0 38 .............................. CCAGACCGGGGCCGCGATAGACCTGAAGACCGGCTTCA 1293463 30 100.0 38 .............................. GATTCGGCCAACAGAGACCAGTTAGGGTTGCACTTTGA 1293395 30 100.0 36 .............................. AATACCTCATCGGTAACTCTGCACTCCACCATCGTG 1293329 30 100.0 38 .............................. ATGTATAGCGTATCGCCACCCTCAATATACTCTAGCGT 1293261 30 100.0 36 .............................. CAAAGACGGTCGGCTGAGGCGGTCGCGGCGTGTTCG 1293195 30 100.0 38 .............................. GCTAACGTGGGTTGGGATGAATGGGTGGACACGACGGA 1293127 30 100.0 40 .............................. GGCTCTATGCGCTGAACAAGGCCCTCGGCCTGGGCAGCGA 1293057 30 100.0 38 .............................. ATACCACCCAACAGAGGGGGTCGCAACCACATACATTT 1292989 30 100.0 37 .............................. ACAGTCTTTACGGGAGTGGTGTACGTTTCCCCAGCGT 1292922 30 100.0 38 .............................. GCTAAAAAGAAGGACAAGAAGAAGTACGAGCGGAAAGA 1292854 30 100.0 35 .............................. CATTTTAGCGGCAACGATAGCGGACAACTTCATGG 1292789 30 100.0 36 .............................. ACGTTCCGGCGTGGTTGGAGCGACTAAGAGTTGATA 1292723 30 100.0 36 .............................. ACTGCAAAATGGTTCATTTACGAAGATATGCAAAGC 1292657 30 100.0 36 .............................. CACAAGGATAAATGACACGCTTATCGCTACGGTTAC 1292591 30 100.0 36 .............................. TTTTTACCACCGCGAATACCGTTTCGTCCGTTCCCA 1292525 30 100.0 38 .............................. CGGGGAGCGAGGATTTCTCACAGAGTTCTGGGTTCCGG 1292457 30 100.0 43 .............................. CGGGAGCTTGAGGGGTCAAGTACTTTTCTCAGACGCGCAGCTT 1292384 30 100.0 38 .............................. CGGGGAGCGAGGATTTCTCACAGAGTTCTGGGTTCCGG 1292316 30 100.0 43 .............................. CGGGAGCTTGAGGGGTCAAGTACTTTTCTCAGACGCGCAGCTT 1292243 30 100.0 36 .............................. GGAGGTGAGAGCATGAGTGAGGAGTTCAAGAAGTAT 1292177 30 100.0 39 .............................. GTAACCCCTGCTATCCTCGAGGATCTTGAGCCGGCTCAT 1292108 30 100.0 38 .............................. TTCCCCTCGACGGTCGAGGAGAGCACAAGCGTCAGCGG 1292040 30 100.0 38 .............................. CTGTGGGAAGGAGGTAAGGCAGTTCTATGAAGACTATC 1291972 30 100.0 35 .............................. CTGGAAGGTGCGCATGGATGCATGGAGGAGCGTTG 1291907 30 100.0 37 .............................. TTTTCCGCGCCCCCCCGAGCGTGATGAAAGACCCGGG 1291840 30 100.0 37 .............................. GTTGTCGTTGCGGTTGACATCAAAAGTGACGGTGTAG 1291773 30 100.0 38 .............................. AAAGCCCGTTCTGGAGTTCCCGGCCCCCGAAAGCCCGC 1291705 30 100.0 37 .............................. AAGATTAAAAATTTCAGATCGTCGCTACCACAGTATG 1291638 30 100.0 36 .............................. AGCCTTATGGTGACCTCATCGCTGTCACCGAGGCGC 1291572 30 100.0 36 .............................. GTTGATATTGACGTGAATATCGTCGCGTTCATCGAG 1291506 30 100.0 37 .............................. CCATGGTTATCACAGAGCTGATAGCAGTCATAAGGTA 1291439 30 100.0 38 .............................. CTGTTGAAGGGGCGGGTGAGCCTTACCACGGGGTACCC 1291371 30 100.0 36 .............................. GGGTTTCATGGAACAGTTTGCCGCCTTCCTTACCCT 1291305 30 100.0 36 .............................. GCGTGACGGCAGTATCGTAGGGGAGCGGGAGGAACC 1291239 30 100.0 36 .............................. AACTTCGACTGGGAGCGGTGGGGACTCGAACCTGAA 1291173 30 100.0 39 .............................. GTGGTAGTCACCCAATCATCCGGCACAGCCTTATCCCGC 1291104 30 100.0 37 .............................. GAGAACATGCAGGGGTTTCACGCTCCTTATTTGCTTT 1291037 30 100.0 38 .............................. CCCCCCCCTACAGGAGGATTAAGCTCCAACTCATAAAC 1290969 30 100.0 36 .............................. GCTTCAGGGCGATGTAGCCCGCGACCGGGATGCCGG 1290903 30 100.0 38 .............................. CAAGTCGGCATACATCTGGTCGGAGTTCTTTTATACTG 1290835 30 100.0 38 .............................. GAATAAGCAAGCTTCGAGAGAGTTTAAAGAGCTGAAAA 1290767 30 100.0 36 .............................. GGCGGGCCCTGGGAAGATTGAAAGGGGGGTTGGAGA 1290701 30 100.0 37 .............................. CAAACATGTTTTTAGTTATCAGCGCCCCCTGCTTCAA 1290634 30 100.0 36 .............................. CGCTGTTCGGAGCAGCAGTCTACGGCGTTAGCAAGA 1290568 30 100.0 40 .............................. TGGCGGTGTTATCGGACGCGGTAGGGTTTTCGGAAATGAT 1290498 30 100.0 39 .............................. CAGTGCTGACATTTTAACAGCATGCTCATCACCAACCGA 1290429 30 100.0 37 .............................. GACGAAGATCGTGTTCTACGCCGCAACGAATGCGCAT 1290362 30 100.0 36 .............................. GAATATCATAATTACATAGGTGTTGAAGTGTTTACG 1290296 30 100.0 37 .............................. GAACCCTTTAGAGAAAAAAACTTTTCCCCTTTATAAA 1290229 30 100.0 36 .............................. TGTTATCATCATAACGCTTTGAGACCTCAATAACGA 1290163 30 100.0 38 .............................. ACGATGGCCCCGGCTCTGGTTTATGTTCTTGTTAAGAA 1290095 30 100.0 36 .............................. GCACTCACCTTATACCCGTCCCACGGGCGCTTATAA 1290029 30 100.0 37 .............................. CCGGTAATCTGCTTGATCTCCTTTACACGATAGCGGC 1289962 30 100.0 36 .............................. ACGAGCGCGTACTAAACAGAATCATGGAGCAGGTCG 1289896 30 100.0 36 .............................. CAATCCTCCTAAGCTTCATGATAACGTAGAGGCCGT 1289830 30 100.0 38 .............................. CTCTTCGACCGTCGAGGGCAATGGGGGTATCTATGCCT 1289762 30 100.0 39 .............................. CTTGAATCCGTGGTTAAAGCGGACGTAAAGGGGGCAAAG 1289693 30 96.7 43 ............T................. ATTTTAATGGCGCGGTGCCTAAACTTCTTCCATGAAAAGGCAA 1289620 30 100.0 37 .............................. TGTTGCGTATTTTGATAGTGCGGACGGTTTAAGATGG 1289553 30 100.0 36 .............................. TGCGCAAGCAACAAATGGAAGTTGTGAACATGTTGC 1289487 30 100.0 38 .............................. TTTACATTTTTCTGAAGAGCATGGCGGCACAGCACGCG 1289419 30 100.0 36 .............................. GGCCTCATCTGCGTAGCTTTTAAACAGCGGGATGAG 1289353 30 100.0 38 .............................. CCAGGTATCCGTTGTGGCCTGCTTCCCCCTTGTGGGGC 1289285 30 100.0 37 .............................. GTCAGGTCGAACGTTGTCCCTGTCCAAACCAAGACAT 1289218 30 100.0 38 .............................. TCTTCATCGTGGGGCTTTCGGGGGGAACGGTGACTCCC 1289150 30 100.0 37 .............................. TGAGGTCACTGAGGGGTATGGGGATGGCCTGAACAGA 1289083 30 100.0 38 .............................. CACAAGGATAAATGACACGCTTATCGCTACGGTTACGA 1289015 30 100.0 38 .............................. AGGGGCGCGGAAAGGAGGAGGCAGTGCTCTACCTCGAC 1288947 30 100.0 36 .............................. TGCTCCTTAAGCGCTTCTAACGCTTCCTTTTGCAGT 1288881 30 100.0 36 .............................. CAGAACGCAATAATAGAAGCGTACGGAAAGGATGAG 1288815 30 100.0 40 .............................. GGCCTGGGCTGCGGCTGAGGCTCCTGCTGCACCTGCCTGG 1288745 30 100.0 38 .............................. CGATACCCGAACGCCCCAGCACCCGCATATCCAAAGCC 1288677 30 100.0 36 .............................. GGAGAAAGATACGTAGACCTCACTGAGGAGGTCGGG 1288611 30 100.0 39 .............................. CGGCCTCTATGTCCCTGATGCTGACCTTCCTCTCCTTCC 1288542 30 96.7 38 ................G............. CGCTGTGGTTCAAGTAACATCATACACGACCCTAGCCG 1288474 30 100.0 38 .............................. CTATCCTGCCCTCTTCGAGGGCCCTCGCGGCGGCCTGT 1288406 30 100.0 36 .............................. GAACTAAGGAAGGAGCTTGAAAAGCTCGATTGGGGG 1288340 30 100.0 39 .............................. GATGTCACTCGAGATGACCATTCACCTCACCTTCTCAAG 1288271 30 100.0 38 .............................. AACGGCCATCTACCATTAAAACATGAAACGCGTTCGCT 1288203 30 100.0 35 .............................. GTGCTCCTCGGCAGTCTTTGCAGCCTCGGAAGGGT 1288138 30 100.0 37 .............................. CTTACTGCCGTCCTGTATATGGAGCTGGATGAGGATG 1288071 30 100.0 36 .............................. TGGTCGTTGGGAGCAAAGGTGGCAACCTTCTCATCG 1288005 30 100.0 36 .............................. TACGGGGGTGGACGGGACGGTTTTAGACGCGAAACC 1287939 30 96.7 35 ...............C.............. CATAAAGATAGACGGCGGCACAATCGAGGTGAAGT 1287874 30 96.7 36 ...............C.............. TCATCTGGGCGAACTTCTCGTCGTCGTTGGACTGGA 1287808 30 93.3 36 ...............C.A............ ACGAGAGCTACGGCGAGGCCGTCGAGAAGCTCAAGA 1287742 30 96.7 37 ...............C.............. GTTGAGGCGGAGTCGTGGACGGACAAAATTGCTGACG 1287675 30 96.7 37 ...............C.............. CACAAACATGCTTTGAACGCTTTTTCGACGCGGTAGC 1287608 30 100.0 38 .............................. GAACCTCAAACTCGATCCGGGCCTTTCCGTACTCCTCC 1287540 30 96.7 35 ...............C.............. CGAGTGGCAGGAAGCCGTCCGGATCGCTGTACCCA 1287475 30 96.7 37 ...............C.............. ATATCCAGTTTGGTGGCTATTTCGTCGTCCATGGCCT 1287408 30 96.7 36 ...............C.............. GTCGGCGCGGTCGTTATTACTTTCGCATAAGGGTGT 1287342 30 86.7 0 .............C.C.A...........A | ========== ====== ====== ====== ============================== =========================================== ================== 95 30 99.5 37 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : GAACCGGAGCTTTTAGGGGTTGTGATAGTGTGGTATCACATTCAAATACTCAAAATTCGCCAAAAACGGACGTTCGGGGCAGGTATTCAAAAATTAAGCCCGATTAGCGCAGGGGAAGTCTTAAATAACCCAATGTTATTATATCACATCCCGTTATTAAATTTTCTTCCAATGTAACGAAATTTTTTTCAGAAACGGCAGAAACGGCATGGTGGGACCAGAAATAGGCCACACTCCAGGGAAATGAGTTGCTTGGCCTATTGAAGGAGTATAAGTCCAGATTTGGACAAATAGAGCGAGAAAAAGGCGCGGGAACCCACAGTGAATGAGCGCGACCCATACGAACGTGCCCGAATCTTTCCCCAAAGGCCTCGGATCTCGGGGGAGAAAGCCCGAATTGATGGTTCCAACGGGTTTCCCAAAAACCCCTCCAAAGAAAGGCTTATAAAAATAAACGCGTTTTATTTCTTTACAGGGCAAAAGAAAGTAAAAGCCGCCCT # Right flank : TAAAGGATCAGAGTCTACTCCCTCTGCGCAAGCTCCATCTCGAAGACCCTCTCGAAAACCGCCTTGTGGTTTCCGAAGGCCTCGAACATTCTGCCGGAGTAGTTCTCGGAGGCGGTTTCGAGGAACAGCCGCAGGTTTCTGCTTATCTCGTCGCTCATGGGGACGTGAAGGGGCGATGGTTCGTAGTAGTCGAGGCCCTTCATGAGGGCCGTTGAGAAGTACCAGAGCGTTTTCCTGACCTTTCTGCCCTTTATCGTGGAGAAACTTGCCTCCATGCAGTTGAACGCCGCGTGAAGGAGGACTATCATGTCGATCTCGACGCCGCGCTCCAGGAGCTTCTTCCTGCCGGCGTCCTTTCTGAGGTCCGTTATCCTGTAGCCGCTTCTCGTCTGCTCATCGTAGGGCACCTCAATGCCGTAGATGCCCTCCACCCTGGGGTCGTAGACAAGGACCTCGGTTCCGCCGACGATGTAGAGCTTTCCGTCGCGAACCTCGACGAC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 3 1646813-1646181 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUU01000001.1 Thermococcus sp. 18S1 NODE_1_length_1989976_cov_34.486576, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1646812 30 100.0 37 .............................. AATCGGAACCTCAGCGAGGGCATCTGGGTCGATTGGG 1646745 30 100.0 37 .............................. CACTGTGGGGCCGTGTTTGATTTTTACCTCGGCCAAC 1646678 30 100.0 37 .............................. TATGTCCAACGAGGTAAAAGAGAACCAAGACCATGAA 1646611 30 100.0 38 .............................. GGCGGTTCTTGTGCTTGATGCAAAGCACCCGCCCACGA 1646543 30 100.0 37 .............................. TTTTGTAGCTAGTGACCGCGTAAACTTCCAATTCCAT 1646476 30 100.0 37 .............................. TGATAGACTGGGATAACCGGGGTTCCGTTTACCCCCT 1646409 30 100.0 36 .............................. TTCTTTACTGAACTCGACCTTTACAGGTATTGTTGA 1646343 30 100.0 37 .............................. TTTTCTGCGAGTAGGCGCTGGTAAGCAAAGATTGACT 1646276 30 96.7 36 .............................C GGCTTCAGCTTGTACTGCTTGCCGAGCTTCTCTACG 1646210 30 96.7 0 ................A............. | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 99.3 37 GTTGCAATAAGACTCTGGGAGAATTGAAAG # Left flank : GTACAACCCAAGGATAAGGTACTGATTCGTTCCCATCACGCTGATTTTTCCCTTTTCTGGATTTCCGGACACGTTATGTCGTTTTATCCTGAACAAACCCCCGCATGGGTCCGGGAATCCTGTTCTCGCAGTTCCAGAAATGTAACATCCGGTAATCCTAACACTTTTTGAATATGACGAATTTTCTTCGAATTTTGGGGTGGAGACATTAGAACGCTGGCTGGAACTGTTCCTCCGTGAAAATCTGTTCTTCTTGAAAATGTGGACATTCAAAATGACTGCGGCCGATTTAACGGGCCGTATGGGGTCGGGAAGTCTCCGACACATACACTGCCCCCATTAACAGGGTGCCGTGATGCGTTTTCTGCCCGTGTTCATCCCGCAGCGGCCGCGCTTCTTGGAGACCGGATCGGGGAACCCAAAGGGGGCTTTCTGCAAAAAGGTTTTATATCAAAGCGCCCATTAAACTCCATTGGAGAAACGGGGCAAAAAACTGCCCT # Right flank : GCGATCCAGACCTCGTGCTCGATGGTGGCATTGTCCATGTTGCAATAAGACCCCCATGAACCAAGAAACAAAATCAAAGGGAGCTCACTCCCATTCTCCCATATCGAAGGGATACTTGGTTTTCAGCACCGCTATCGTCATCAGTCCGGCGCCGATGTACTCCATTATGATGTCCCGGATCTTGTTGTTTATCGGCTCGTCCACGTGGGGCAGTATGGTGAGCGAGGCGGCGAGCTCTATGAACTCCCACAGGACGCCGATTACGAGGAGCGCCGCCATCGAGTATTTGACGATCGTCTTAGCGCTCCAGCCCTTGTTGTTGAGCCTGGAGTATTCGAGAGCCACCTTGGCGAATATCGTCCACATCATCAGGCCGCCAAGGGAGTGGCCGATGATGTCGCCGTTCTCGTAGACGTTGTAGAGGTCAACGTTGAGTATGGGAACGTTGAGGAGCGTCACGTGGAAGAGGAAGAATATCGCAACGATTATCATGACGCCGT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTGGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 4 1730373-1731678 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUU01000001.1 Thermococcus sp. 18S1 NODE_1_length_1989976_cov_34.486576, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================ ================== 1730373 29 100.0 38 ............................. TCCCCGAGGGGGTGGTTCCTGGTAAAACTCCTTTCATA 1730440 29 100.0 43 ............................. TTCATGTAATAAGTCCCAAGGTAGCTTTTACCCGCAGGAACGG 1730512 29 100.0 46 ............................. GGCATACTTCCTGGTGGACTTCCCCCGGGTAGTCTGTGCCTGTACC 1730587 29 100.0 48 ............................. TGGATCCGGTGCGTGTGATTAGGGCGGTGAGGTTTTCAGTGAAGTATG 1730664 29 100.0 37 ............................. CTCAAACAAAGAGAAGAAACCCTCCCCCCTAATCCTA 1730730 29 100.0 40 ............................. TTCTGAATGGAATTTCGATCCCTTCGTTGTAATCCATTGA 1730799 29 100.0 38 ............................. CGAGTATGAGTGGTCTGAATATGAAGGCCGGACGAGAC 1730866 29 100.0 40 ............................. TAGGAGAAGCGGCCTGGATTCTAGGAAACAAACTCATCAA 1730935 29 100.0 39 ............................. CTGCATGCTTCTTTGCGTCGGGCCACATCCGTGGGTCAA 1731003 29 100.0 43 ............................. TGGAATGAAGACCGGACAGGCACTCGCCACGAGTGTACGCACG 1731075 29 100.0 40 ............................. CTACCTTATACACTGGCAACTCCCTTTTGATATCGGTTAT 1731144 29 100.0 45 ............................. CACAATGGCTTCCTCTGTGACAGGCATTACTGGTTTTGCTGTAAG 1731218 29 100.0 41 ............................. GCGCCAGAACGCGCCCCCTTCTTTACCCCCTCGGGACCAGT 1731288 29 100.0 43 ............................. GCGGCAAGTATGAAGTACACACCAAAAATTGTGCTTATGACAC 1731360 29 100.0 43 ............................. CGAGTATGAAGTACGCAAGAAAAATCATTATGAATTTCATCCC 1731432 29 100.0 42 ............................. CCGTGTGGATCGCCCAGGTTATTGTTGCAATCATACTACCAA 1731503 29 100.0 45 ............................. TCGAGTTTGCGTAGTTCGGGAACTTTGCGATGATGTCGCTGACAT 1731577 29 96.6 44 ............................C TCGGCAACCTGACTATTTGATATATACGCCATCTTTTTCGACCT 1731650 29 89.7 0 .....................CC.....C | ========== ====== ====== ====== ============================= ================================================ ================== 19 29 99.3 42 GTTTACGCAGAACATTGTTGTTTGGAAAG # Left flank : GTAAAACGCTTGGTCATCATAGGTTGTAAAACCGCCCGGCCGGCGAGAAAGGGCTACCAGAGCGGCGTTTTGAAAACACTGCTATTTAAACGCTGTCTTCAACAAAAGAAGCAATTTTAGATGACTCCAGAATTTCGGGCATTTTCGTGGTTTCTCTGCGGGAACACCGAGTTCTTGCCGGTTCCCATATATCAGTTTTCGGCGTTGAAGCTTTCTCCAGGGGTTTGGGGCGCTCCCGTGCCAAACTTTTACAGGTGGTAAGGCGCTTGATGTTGTTAGGTATTAAAACCGACGAGGGGCGTTTTTCGGGCCAGTTGGGGACGGTGGTGCGTTTTCCGGGGCAGGAGGGAGTTTTGGTTCTATGGTTAGCGTTTCCGGGTGGGGACACCCGACATTTCCGGTTCAAAACGGCCCCCGTGCGAAAAGCCCTCCCGCGAGAGCAAGGTTTATAAGGAGTTACCACGTATTCCCTTTCGTCCCCGGAAGCTTCCCGGGGCATG # Right flank : CCCGCCTTTGTCATGGCTGATGTGCGGGGTGGTCCCTAAACTTGATGGCTGGTTCGTTTGGTTCGGTGAAAACATGGCCGCCGCCACGAACCGCACCACTTCCGTGGACGGACGCGGAAAAGTTTATATACGCTGACTGAGCATAGTTTGTCCGGTGCTTCGGCGCATGAAGTATCCCCTCTTTATTACCCAGCATGGTGAACTCAGACGCGAGGAGAACGCGCTCGTTTTTTCCGGGGAACTCGTAAAGAAAGTCCTGCCGCTGGGGCAGATCAACGAGATCCACTGCCTCGCGAGGGTCTCCCTCACGAGCGGTGCTATTGACCTCCTCAGTGAAGCGGGAATCCCTGTTCATTTCTACACAATCCGGGGAGATTACAAGGGTTCGTTCATAAACGACGCCTCGCCGAGGGGTAGGCTCCACCTGGCCCAGGCCGAACATTACATCGACCCCGGGAAGAGGCTCCATATAGCCAGGGAAGTCGTGAGGGGGATACAGA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACGCAGAACATTGTTGTTTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 5 1742449-1743122 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUU01000001.1 Thermococcus sp. 18S1 NODE_1_length_1989976_cov_34.486576, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 1742449 29 100.0 35 ............................. CAATCTGAATATTATAAACTTCAACGTCCTCCACC 1742513 29 100.0 41 ............................. ATCACCCTCACCGTCAAAGCCCTCGAAGGGAACAAAACAAA 1742583 29 100.0 43 ............................. TTCTGACTTCCTTGAGGATCCTCCCACGACCCCCTTTTCCTAG 1742655 29 100.0 45 ............................. CCGCAACTCCTCCAAAACCTTCCGCTCATAATACCTCCTATCAAA 1742729 29 100.0 42 ............................. GCGTACCGGTGCCACCTCACTATCTGCCACACGATGTTCATA 1742800 29 100.0 45 ............................. TTCTTGAGCGATCTTCAAAGTGCTTAGTGCGGTCAGAGCTGTAGC 1742874 29 100.0 47 ............................. GTCCCCTGAGTTAGAGGTGGCCTTTATCTCAAAGCTTCTTCCAGAGG 1742950 29 100.0 44 ............................. TTGGAATCGCGGCTTTGAGGATCTTCTCCCGAAGGCTAGCTTTC 1743023 29 100.0 42 ............................. TGAGGAGCATGTGGAATCTATTCCTGAACCCTTCCCCCTCTC 1743094 29 79.3 0 ......................CG.GGTT | ========== ====== ====== ====== ============================= =============================================== ================== 10 29 97.9 43 GTTTACGCAGAACATAGTTGTCTAGAAAC # Left flank : AGTAAAGCGCTGGCTCTCCAGAGATTGTAAAATTTTGGGAATTTTGAAAAACGCTTTTAAGAACTGTTTTAAAGCAAAAAAGAGCTTTAAGGGCGTTTTTAGTCTCGTTAATCTTTTTTCTTCGAGTTTTAAAATCCAAGCGTTGGGGTTCCTTTTTCAGGTTTTTAAAGGCTTTTCCGGGAATCCCGATTACGGATTCTTGATATTCAAGCTGTTTTTGAAGTTTGGAGTTGCTCCCCTCTGAACTTTTGTTCGTCGTAAGGCGCTTGACTAAAGGCGATGTTAACACCTGCGGGAGGACTTCTTCCAGCGGTTTGAGGGATTTAACGGGTGTTATAGAGCGGAGGGGCAGTTGTTTTTCTCTGTTTTTTCTGGCGCGTTTCTTTCTTTCGGCATGGCTGTTTCAACGTCTCCTGGATTGAATTCGTCTCTCGTGAGCGCAACGTTTTTAAGGGGTTGTTTCCTATTTCTATTTGCCTCGGAAAGCTTCCTGAGGTATG # Right flank : TATGGTTTTACCCGTACGCGCTGGTTAGCGCACCCTTTTTGATACTTAGAGTATTGAAAACCGAAAACCTTTTCTTTGGTGGGGGAAATTCCCAAATTCGCGGGGGTGGAATGTTGAAGTTGGAGAAGCTCAGGAGAACCCTCGGCTTTGTCATCCTCCTGCTCTCGAGCCTCACCTACCTCTCCCTCACCGACACGGCGGATCTGAACTTTGCAACTGCCATCGGCCTTCTCCTGCTGGCCTTCGCCTGGACCGACTACTTCTCATTCATAATCTACGTCTTCCTGGCCTTCGGGGCCATAGCCGGCTTCTTCATCGGGAACCTCGACGGCGTCCTCTACGGCATCCCCACGGGCCTGGCCTTCGTGCTCTTCGCGGCCCTGGTGAGCCACAACCGGGAGAGGCTCGCGACGCTCGTCTTCCTCCTCTCCCTCCCCCTTGCCCTGGCCAACTCCTACCTCTACCCAGTGTCAAGCCCCATAAACTGGGCGCTCGTGGGC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACGCAGAACATAGTTGTCTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //