Array 1 189436-186786 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKYP010000003.1 Klebsiella pneumoniae strain 2566 NODE_3_length_735885_cov_76.998861, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 189435 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 189374 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 189313 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 189252 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 189190 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 189129 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 189068 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 189007 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 188946 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 188885 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 188824 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 188763 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 188702 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 188641 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 188580 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 188519 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 188458 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 188397 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 188336 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 188275 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 188214 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 188153 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 188092 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 188031 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 187970 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 187909 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 187848 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 187787 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 187726 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 187665 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 187604 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 187543 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 187482 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 187421 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 187360 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 187299 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 187238 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 187177 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 187116 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 187055 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 186994 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 186933 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 186872 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 186814 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1459-456 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKYP010000040.1 Klebsiella pneumoniae strain 2566 NODE_40_length_3972_cov_83.132120, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1458 29 100.0 32 ............................. CAACCTCAATTCCTAATGGCTGTCTAAGGAAA 1397 29 100.0 32 ............................. CAGGGTTTGCCCTTTTGCACCGCGCAGCGGTC 1336 29 96.6 32 ............A................ AGCAACGTTTCCGGATTATATGGCTGGAACGT 1275 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 1214 29 100.0 32 ............................. TGGTGTTGTCCACGGTCACCCGCTGGCTGGAA 1153 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 1092 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 1031 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 970 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 909 29 93.1 32 ............CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 848 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 787 29 93.1 32 ............CA............... CAGCGTCTGAACGGACGAAACATCCCTGTTGA 726 28 93.1 32 ..........-..C............... CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 666 29 93.1 32 ............CA............... GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 605 29 96.6 32 ..............A.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 544 29 89.7 32 ............CA...........A... CACTACCAGATCCGAATGGACACCCGTAATGA 483 28 82.8 0 ............CAC........-....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 94.9 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTGCGCCGGGAGACCGGTTAGAGATCAAGGGGTGAAAGTCCCCGACCATTGAAGGACCAGCAATCCACAAGGTCCCCGAGTCATGCGTTGCATACCGCGAGGTATGGGGCGAAGCGTTGACA # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //