Array 1 183194-180544 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEPUP010000002.1 Klebsiella pneumoniae strain k21 NODE_2_length_729642_cov_51.554528, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 183193 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 183132 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 183071 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 183010 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 182948 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 182887 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 182826 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 182765 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 182704 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 182643 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 182582 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 182521 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 182460 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 182399 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 182338 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 182277 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 182216 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 182155 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 182094 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 182033 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 181972 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 181911 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 181850 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 181789 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 181728 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 181667 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 181606 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 181545 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 181484 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 181423 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 181362 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 181301 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 181240 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 181179 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 181118 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 181057 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 180996 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 180935 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 180874 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 180813 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 180752 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 180691 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 180630 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 180572 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1154-456 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEPUP010000046.1 Klebsiella pneumoniae strain k21 NODE_46_length_3667_cov_66.689548, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1153 29 100.0 32 ............................. CAACCTCAATTCCTAATGGCTGTCTAAGGAAA 1092 29 100.0 32 ............................. CAGGGTTTGCCCTTTTGCACCGCGCAGCGGTC 1031 29 96.6 32 ............A................ AGCAACGTTTCCGGATTATATGGCTGGAACGT 970 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 909 29 93.1 32 ............CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 848 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 787 29 93.1 32 ............CA............... CAGCGTCTGAACGGACGAAACATCCCTGTTGA 726 28 93.1 32 .....-.......C............... CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 666 29 93.1 32 ............CA............... GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 605 29 96.6 32 ..............A.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 544 29 89.7 32 ............CA...........A... CACTACCAGATCCGAATGGACACCCGTAATGA 483 28 82.8 0 ............CAC........-....A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 94.8 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTGCGCCGGGAGACCGGTTAGAGATCAAGGGGTGAAAGTCCCCGACCATTGAAGGACCAGCAATCCACAAGGTCCCCGAGTCATGCGTTGCATACCGCGAGGTATGGGGCGAAGCGTTGACA # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //