Array 1 256646-255686 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABEQG010000001.1 Gluconacetobacter diazotrophicus strain LMG 7603 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 256645 36 100.0 30 .................................... CCTGATACGACGCCCATGTCGCCGTGTTGC 256579 36 100.0 30 .................................... TGCGCATTGTCCATCGCCTGCGCCTGCTGA 256513 36 100.0 30 .................................... CTATACAACAGCCTTGGCAGCTATCAGGCG 256447 36 100.0 30 .................................... CATCGTCAGCGACATATCGGGAAACATTTG 256381 36 100.0 30 .................................... GCAAGATAACGGCCTTCGGCCACACGAAGA 256315 36 100.0 30 .................................... TTCATGATGCGGACGGGTGATATGCTGTGG 256249 36 100.0 30 .................................... GATCTGAATGCTGCAACGGCCCCCGTCACC 256183 36 100.0 30 .................................... GCAGATTTCGATACCGGCAACGACGGTCTT 256117 36 100.0 30 .................................... GAGCGGAGGCAGCTTGTGGCCCAATATGGC 256051 36 100.0 30 .................................... GATCGCGCATGATGGCCGGATCAACGCTCA 255985 36 100.0 30 .................................... CCTCGTTGCTCGCGCGCGGGTGCAGGGCTG 255919 36 100.0 30 .................................... ATCGAGCGCCGGCCGGACGTCGTTGTCGCC 255853 36 100.0 30 .................................... TGCACGATCGAGCATATCGACGATTGACTG 255787 36 100.0 30 .................................... CATGGTGTCGAGCTTGCTCGGCGCGTTCTC 255721 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 100.0 30 AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC # Left flank : ACCGTCCTGGCCGCAACCGAAGCGGTAGCCATGTCCGTGGTGCGCGCCATCGAGCATGGCAGTGCCGCGCTTCTCTCGACTCCAACTCTGAAAGCCCGGGATTGACGGTGCGCGATGAAAGCCGAGGACATCCGGTTCATGTGGCTTCTCGTATTTTTCGACCTTCCGGTTCGCACCAAAGAGCAGCGACGACGCGCCAGTCGCTTTCGCCATTTCCTCAAGGATGACGGCTTCTTGATGTTGCAATTTTCGGTTTACGCACGCATCTGCCGAGGACAGGACGCTGTGGAAAAGCATGTTCGGCGGGTGCGGTCGAATCTTCCAAAGGAAGGTAGCGTTCGGACACTACAAATCACGGACAGGCAATACGGACGGATGGAATTGATGCTGGGCCTTGCGCCAAAAACCGAGCGAATCGGACCTTCTCAGATGGTGCTGTTGTGATTTCGGCGTCAAAAAACGCGGAAATCACAACAGTTCCAATTACTTCCCTGCAAGGT # Right flank : TGCTCTTAGCTGTGCCGGTGGATTTTGTGGGCACGAAGAACTCATGATTTTCATCCAATTCTTCCGGGTTTTCCACGCTGCTGGGCGGGTTCCCTCTGGCGCGGCGGGGCCGGTGTCGCTACATCGCCCTGCATGATCGACCGTGACGCCATCGCCGCCGCCATTCCCATGCCCATCCTGGTCGCGCCGCAGGCCATCCTGCGGCAGAAGGCGCGCCCCGTCCGGCCCGAGGATGCGGCGGGCGTGCGCGATGCCCTGCCGCGCATGTTCGCCGCCATGTACCAGGCCCCGGGGATCGGCCTGGCGGCCCCGCAGGTCGGGATGGGCCTGCGATTTGCCATCGTGGATTTGGGCGAGGAAGGCGAGCGCCAGCCGCTGATCCTGATCAACCCGGACGTGATCGCGGAATCGGACAGCCTGGCCTCGCGCGAGGAAGGGTGCCTGTCCCTGCCCAACCAATATGCCGAGGTGATCCGCCCCGACCGTGTCCGCGTGCGCTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 30827-29005 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABEQG010000027.1 Gluconacetobacter diazotrophicus strain LMG 7603 contig00027, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 30826 32 100.0 35 ................................ CCCGGATTGACGGGCGCCGTGAGCACTCAATCAAC 30759 32 100.0 34 ................................ CCCGTGCTGTTGGTGATTTTGATGTGCGTCATGC 30693 32 100.0 34 ................................ CTGTTGACGAGGAAGACTGAGAAGTGGGGGACGT 30627 32 100.0 33 ................................ CGCGTTCCGGGGCAGCCGGGCATCCGCCAGATC 30562 32 100.0 34 ................................ GCTGCGGATCGATCAGCAGGCGCGTGAGCCCCTT 30496 32 100.0 34 ................................ GGATGATATCGCCAAGGACGACGACGAGCGGGCT 30430 32 100.0 35 ................................ ATCGTCAGCCAGATCTCGGAGCCCGGCGCGCGGAT 30363 32 100.0 34 ................................ CCGTTGACCATGGTGAAGATGGCCGGCCGCCAGG 30297 32 100.0 35 ................................ GAATAGTCGGCACCGATCAGCTTGTATCCCGGCGT 30230 32 100.0 34 ................................ GCGCCATCGCCTGGCGGCCGGCCATCTTCACCAT 30164 32 100.0 36 ................................ ACGGCGGTCTGCATCATGTCGGTGGGTGCCGAGGTC 30096 32 100.0 35 ................................ TTGAGCATTGTTTCGATCTCGCCAATCGGTCGCAT 30029 32 100.0 34 ................................ ACATTAATGGCCAGCTCATTCGCGCCGCTCTCTA 29963 32 100.0 35 ................................ AAGAACGGCGAATGGGATGAGGCCGGCTATCAGTC 29896 32 100.0 34 ................................ ATGCCCTGTTTGCTGGCCGGCGAGCGGCGCCAAG 29830 32 100.0 33 ................................ ACGACATTCTCAGGCGACGCGCAAGCGGGAAAA 29765 32 100.0 34 ................................ CCAGCGGTAGCTGTCGTAGCCCATGACCTCGGTC 29699 32 100.0 33 ................................ TTGAAAATCATCGGGCGCACGTTGTCAGGGGAC 29634 32 100.0 34 ................................ CGGGCTCGATCTCGATACCTTTGGCGTGCAGGAT 29568 32 100.0 34 ................................ CGCTGCGCGCGATCAGGTAGCCGTTGGAGATCTT 29502 32 100.0 35 ................................ TAGTCGCGGCGATGCTGCTAAGCATCGTCTTGCCG 29435 32 100.0 34 ................................ CCGCATCGGCAGCGCAGGCGTCCTCGACCTCAGC 29369 32 100.0 35 ................................ CCGTTTTGTCTGGCCCAATACGTTCAGCGTGGACG 29302 32 100.0 35 ................................ TGATACGTTTTCGACATGGGAAACACAGCAAGAGC 29235 32 100.0 35 ................................ CCCTCAAACGCAAGACGGCTGATCGGCTCTGCATA 29168 32 100.0 34 ................................ GATGTCCTCCTGCACCATGCGGAGGATCGCACCC 29102 32 96.9 34 .........C...................... GCCGACCGCGTCGGACAGGAGTCGCAAGGTTGTC 29036 32 81.2 0 .........CAC....A....G.....A.... | ========== ====== ====== ====== ================================ ==================================== ================== 28 32 99.2 34 GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC # Left flank : TACCCAGCATTCGTGTGGAAATAGGCGATGCTGGTGCTGATTACCTATGATGTAAACACCGAGGATGCGGCAGGCCGTAGACGGCTACGGCGCGTAGCACGCGCCTGCCTCGATTTCGGCCAGCGCGTGCAATATTCGGTGTTTGAATGCGAGGTGGACCCCGCACGCTGGACGGCCCTGCGGGCGCGCCTGATCGCAGAGACCGACACCACAAAGGACAGCCTGCGCTTCTATCAGCTTGGAGCGAAAGGAAAGCAGCGGGTGGAACATATCGGTGCAAAGCCCGTCCTGGACCTGGATGGACCGCTTCTGTTCTGATCCTGCGCGATACGAAAGCTGTTGGGCAAACCCCTGCCGATTCGCGCATCTACCATGTGGTTTCCTATCAATGTGTTATGCCCCAACGCAGATCGCTTGCCATACTCACTGCACCAATCTGGCGATGGTTCGCGGAACAGACCCATTTTCCCTTTTCTTGACAAGATGATAGTATGCGCGCC # Right flank : ACGGCAAGAATGCGCCTCGCATGCAGGGGCATAGATCGAAGCTATACAAGGACTCGGGTTCACTTCAGCGACCATCCCGAGAGAAGCTGCTGTCGGTCTACCCATCCAGCGACTGCAATTCGAACAGGCGGCGATACAGGCCGCCGTCCTGGGTGATCAGCTGGGCGTGCGATCCGTCTTCGCGCAGTTCGCCGTGGGCGAAGACCAGGATGCGGTCCAGGCCGACCACGGTGGACAGGCGGTGGGCGATGACCAGTACCGTGCGGCCGACCATCAGGCGTTCCATCGCATCCTGCACCAGGATTTCCGATTCCGAGTCCAGGCTGGACGTAGCCTCGTCGAAGATCAGGATCGGGGCGTTGGCCAGGAAGGCGCGGGCGATGGCCACACGCTGGCGTTCGCCGCCCGACAGCTTGACGCCGCGTTCGCCCACCATGGTGGCGTAACCCTTGGGCAGGCGTTCGATGAAGCCCGCCGCGTTGGCCTGGCGGGCCGCTTCC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //