Array 1 74741-76019 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLK01000131.1 Fischerella muscicola PCC 7414 contig00131, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 74741 37 100.0 37 ..................................... TTTAGCGGAATAAAAATAAAGTTCATCGTAGAGAAAA 74815 37 100.0 37 ..................................... TCTTCTTATTAAGAAATGCTTGTAGAACAAGCTTTTG 74889 37 100.0 36 ..................................... TCTGCGAAGTTTCCAAAGCTGGGGCGCTAACTGATA 74962 37 100.0 35 ..................................... CAGTCAGGACTTATCATCATCAGGTAGCGGGTGCT 75034 37 100.0 36 ..................................... TAGGACGGCCGACTGGATAGCTGTATCGATAGCCTC 75107 37 100.0 35 ..................................... CATCCTTGTGCTTGAGCCGGCTCGCTATCCGGAAC 75179 37 100.0 36 ..................................... AATCCTATCCGCGTTAGGTTTTGGTTTTCGTGGCAT 75252 37 100.0 37 ..................................... GTGACGGGTTCGTATTAGCTTCGTGTCTTCGTATGTC 75326 37 100.0 35 ..................................... CTCAGCAAGCACCTCTAACAGGTACTTGCATTTAA 75398 37 100.0 36 ..................................... ATTCTTTAGAGTGAATCCCCAGCTTTGTTATCTGGA 75471 37 100.0 34 ..................................... AGTGTGTATGCCGCGGACACTCCAGAATTTGGAC 75542 37 100.0 33 ..................................... GTAGAACAAGCCACCAAATAGAGAGCCAAATAC 75612 37 100.0 36 ..................................... TCTACATCCGTTCTCAGGACAAACCCGAAAGATAAT 75685 37 100.0 36 ..................................... TCTGTCGGGAGTAGTGCAACGCGTGTTCAAACCTGT 75758 37 100.0 36 ..................................... AATTAACCCTATCTTTTTAAAAGAATTGAGTTAATT 75831 37 100.0 39 ..................................... ATCACAAACATTGACTGCTTTTCGTTGAACCAGCAAAGT 75907 37 100.0 39 ..................................... TACTCGGTAAGCTGTGAACGGGTAAGGAACCATTTGATG 75983 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 18 37 100.0 36 GTTGCAACTTACACAAATCCCTATTAGGGATTGAAAC # Left flank : CCAATACTGATAGTCTTTTTATCTGCCACTACCACGGCCATCACTATCGATATTAGCAATATGCTGCCCAAACGCTGGAAATTTCATAAGATGCTCCCTAATGACCTATCTAATATCATCTACAAAAATGAGTGGGAATAACAGGATCACTGAGCTAGCATTTGGCATTTTGGCAGAAAATGAACTTACAGGCTTTTTTTGGTCAGATATTAATTAATGATCATCAATGGGAAATGTTGAGTTTCTGTAATTGCGCCAACCTGTAGGTGTTTTACACACAAAGGAAAATGTTATGCTTGAAAGCTTTGTCTGTTCTGGGTTTGAACCATTCACATCAAAACAGAGGTTCGCGCAATGTCTGAAACTTCTACCAGTAAAGCTTTTGAGCCGATTTTTTCCAAGCCACTCTTGACACTGCGATCGCTCAAACGCTATATTTATTCCAGGTCTGCACTACTGAACCTTGAAAACCAAATACAGCAAGGCTTCTAGATCAAACA # Right flank : TGTATTCAGTCCAAACCTCTTTGAAATCCGGCAAGTTGCAACTTACAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTACACAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 36-793 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLK01000132.1 Fischerella muscicola PCC 7414 contig00132, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 36 37 100.0 34 ..................................... TTTTGCAGAGTCCGTAGGTTCATTCTTAGTTAAG 107 37 100.0 36 ..................................... ACTTACCACTGGTTAGACTCCTAGTAGTAGTTTTCT 180 37 100.0 36 ..................................... GCCTCGTCCCCGGCGCAAGATTTGGGAGTTTACAGG 253 37 100.0 33 ..................................... CCAAGCAGGGTCTAGTTTAATTTTTTTGTCAAC 323 37 100.0 35 ..................................... TATACCAATATTTAGAAAACAAGAAGCTGAAGGAT 395 37 100.0 35 ..................................... TGCGTACATTTCTCACTTGCTCTGATGGCACAACA 467 37 97.3 34 ....................................A TGCTATGAATCATCTGCTTTGATTTATCAGCAAC 538 37 100.0 37 ..................................... AGGAATTCGCTAAAAAATGTTTTCCCCGTTCCTGGAG 612 37 100.0 38 ..................................... GCCCATCAAATGGCTCTCAAGTGCAGCCAGGCTTACGA 687 37 100.0 33 ..................................... TCATCTTTAATTTCAATGCGATCGCTCTGTTTT 757 36 73.0 0 AC..T..A.A.................A..-A..G.G | T [782] ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 97.3 35 GTTGCAACTTACACAAATCCCTATTAGGGATTGAAAC # Left flank : CACTCCAGACATTTTCATTTTTTTAGCCAATAAGCG # Right flank : GAGAGTAAGGTTTGTTCATAGCGACTACCTTCTGCTCTCAGCCTTCTACCTTCAAGTGGTATATTCAGCGTTAATTTTCACGTAGTCATAACTTAAATCACAACCCCAAGCTTTACCGGAACCATGACCGTTACCAATACTTACAGAAATTAACACGGTATCTTCCTTAAGATACGCACCCGCAGCTGCTTTTTGTAGATATTCACTTGCTGCTTTGCGATCAAAAGCTAGGGGTTGACCATTTTCCATCATTAAAAAATTCCCTAACTGAATTCTAAGGTTCTCTTGTTCAAAAGGTACACCCGCACGTCCGGCAGCCGCCGCAATGCGTCCCCAGTTAGGATCACGGCCAAAAATCGCAGATTTGACTAAAGATGAACCAGCAATAGTTTTGGCAATTTGACGTGCTGCTTGTTCATCCTGTGTGCCAGTGACTTGCACTTCCACTAGACAAGTTGCACCCTCTCCATCACGAGCGATCGCTTTTGCTAAATGCTGGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTACACAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 612-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLK01000155.1 Fischerella muscicola PCC 7414 contig00155, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 611 35 100.0 38 ................................... ATTAAGCACAGCTGCTCCAGCACCAGCACCAGCACCAG 538 35 100.0 38 ................................... ATAAGTTCCCAGATCTGTCCGCTATGGACAAAGGTCAA 465 35 100.0 37 ................................... GCTGCTGCTGCATACTTCCTCCCTGACGCAAGAACTC 393 35 100.0 40 ................................... TTCAGAGAGCCGCTCGTCTGGTTTGCCGCAAGGATCAGAT 318 35 100.0 35 ................................... TCTCTACCAGTGACTCCCACATTCTGCTTAAATTC 248 35 100.0 38 ................................... TTAGTTGTACCAACTACAAACCCACATCCAAACAAATC 175 35 100.0 35 ................................... TATAAGCAAAGCTACGGTCAATCCCAGCACAATTG 105 35 100.0 38 ................................... TTCATCAAGCAGTTGCGTAAGCAACTGTAGTTCTTCTT 32 32 88.6 0 ...............................G--- | ========== ====== ====== ====== =================================== ======================================== ================== 9 35 98.7 38 GTTTTAAATCACTTACCCCTCACGGGGATGAAAAC # Left flank : TTGAAAAAGTTTCTCAAGCACTGGGAAGAAAAGCTGCAATCTGAGTTAACGCACCCAAATACAGGATATAAAGTTAGCTTTCGCAGGTGTTTAGAGTTACAAGTGCGGGAGTATGTAGCTTGTCTGATGGGAGAGGTGAAGATATATAGACCAATGATTTGGAAACCTTAATAGAGAGATTGCATTGTGTTGGTTGCTATGCTATTGTTTACACCAACACCTGTACCTTGAAAACTTAATCAATACATATTCTCTGCTTGTAACCTGATAGTTAGTTTCCTTAAGGCATTTTGTTAAGAAGTGTAAACTGAGGGGGTCGTCTAACAGACCAAAGGCTGATTGTTTCGTTGATCCCCTCAGATAACTTAATGTGTCAGGGTTTGAGTTACTTGCAGACTCTAGTTATTGTCAATAATAGTGGTTTATTGACAGGTAAAATAGACCCCCCTCAGTTTTACAGTTCTGTAAGCTTTATTTGGCAAGCTTTCTGTAAGAGTAGA # Right flank : G # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAAATCACTTACCCCTCACGGGGATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 4870-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLK01000166.1 Fischerella muscicola PCC 7414 contig00166, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 4869 37 100.0 34 ..................................... GTACAAAAGTACGTTGTACGCCAGGCCCACAAAA 4798 37 100.0 34 ..................................... ACTGTGCGATCGCCTCCAGGAATTAGTCCCGGAT 4727 37 100.0 33 ..................................... AAGTCTTTTTTTAAATAATATGCTTATTGATGC 4657 37 100.0 35 ..................................... CGCTATTATATTTTAAAAGGCAAAGACGGAAGTGT 4585 37 100.0 37 ..................................... TTTTCCAAAAAATTTTAAAAGCTCAGCCAGATATTTT 4511 37 100.0 35 ..................................... AGTGTTATAAAAATCAAAATATCACAGAATTACTG 4439 37 100.0 36 ..................................... CCCGCTATTGGCGATGTCGTGCCATTAATTTATTGC 4366 37 100.0 33 ..................................... CTTATTACAAGTGCTTGCCGAGAATCCAGAAAA 4296 37 100.0 39 ..................................... GCAAACTGATCACTTTGATAATATTTTTGATCTTTCAGA 4220 37 100.0 35 ..................................... GCAAGCGGTAAGAGTCCACGTAAAGCATCCAAAGC 4148 37 100.0 35 ..................................... CGTATTCTCTTTTAAGCTTGTGTAAATTTGCACAT 4076 37 100.0 35 ..................................... CAGCAAATTAATAATTCTGCTGGTTTTCCAGAAAT 4004 37 100.0 34 ..................................... TTTTTAGTGGGAGAAAAAGAAATTTCTCCTCATC 3933 37 100.0 33 ..................................... GCTCGCACTAATTGCGATCTAATTCACGATAAA 3863 37 100.0 34 ..................................... GAATGATTTTTGTTAATTCACTCGTCCGCATGTG 3792 37 100.0 37 ..................................... TATCTTTTGGACTTCCTCAGGGAACCAATCCAACTGA 3718 37 100.0 34 ..................................... TTTATTGAAAATACCTTTTGGAGGTTAAAAGCCT 3647 37 100.0 39 ..................................... TATTGTGTAAGAGTCCAAATTCCCAGGCGTGAAATAATC 3571 37 100.0 40 ..................................... TTTGGTATTTGCCTTGTATTAGCTGTACCAATAATTTCAG 3494 37 100.0 35 ..................................... CTTTTTACCCAGTATCAGAAATTATACGGAATCAA 3422 37 100.0 37 ..................................... GACGAACCGATTATTAGGCCAATTAAGAATGACTTAG 3348 37 100.0 36 ..................................... GACTTCTCCTCCCGCTAGAAGCAGGAGGATTCTAAA 3275 37 100.0 34 ..................................... TGTTTGGTGGATAGATAAAAACGGATGGGCTAAG 3204 37 100.0 37 ..................................... AAGCCCTTCTTGCCAGAAAAAGCGAAATGCTGGAGAA 3130 37 100.0 41 ..................................... GAACAACTGGTAATTAACAAAGCACCAACATTTCCAGATAA 3052 37 100.0 34 ..................................... CGAATACAAGATCTTCGTAATAAAGCGTTTTGGC 2981 37 100.0 33 ..................................... TTATGAAGTGCGCCACAGCATCTTAAGATTAGC 2911 37 100.0 35 ..................................... GGAGTGCCTTGGCAATTATCTCTGCTGCTGCTTGG 2839 37 100.0 39 ..................................... AATTTCTTCCAGTTTCCATTGAACTTTTGTGATTACTTC 2763 37 100.0 36 ..................................... CCAAGATCCTGAATATGATGGATCTTTGGAGTTGCC 2690 37 100.0 35 ..................................... GCTAACAACTCCTTGTACTCAGGATGCAGCAGATT 2618 37 100.0 32 ..................................... ATCATAGTGCTCATAATGAAATTGATATTCTT 2549 37 100.0 34 ..................................... AAACGCTTTCTCTAAACCACTGTAAGCGTGACAA 2478 37 100.0 33 ..................................... GACTGTTTTAGGTAATTTGGATTCAGCTAGTAA 2408 37 97.3 40 ...A................................. GATAGCGACTAAAGCCTCCCCTGATGCAGATATCAGCAGA 2331 37 97.3 38 ...A................................. TAATTCCCAACTCAGTAGGTCGGAGGGTTTGGGCTGTA 2256 37 97.3 37 ...A................................. GGCAAACCTCTATTCTCAGGCAGCAGCTAGGTTTGGC 2182 37 97.3 35 ...A................................. GGGATCTCCACTGCCAGGCCCAGTAATTTCCCGCA 2110 37 97.3 40 ...A................................. GGGTGGCATCCGACTTAGCCCCTTGGTTATCTGCCTCATG 2033 37 97.3 37 ...A................................. GCTCAATGAGTTTTTCAGCATTTTCACCACCACCAAA 1959 37 97.3 37 ...A................................. TCTTGAACGGAGAAAATATTCAAAACTTGCAGTTCTC 1885 37 97.3 34 ...A................................. GATTATTTTCACGACAACAGCACCTTACACAAAA 1814 37 97.3 42 ...A................................. GTTGCTTGCGCTGTTTCTCACCTTCCTTAATTTGATTGATAA 1735 37 97.3 39 ...A................................. ACCAGGGGGCGGGACTACGATAGATTCGGTGGTCTGGGC 1659 37 97.3 33 ...A................................. TTTCGATGGCTACGACGTGCCAGATCTCCTTAA 1589 37 97.3 36 ...A................................. GGAAGAGGGAACTTCCAGCGCGCGGGCTTCCCGCCT 1516 37 97.3 38 ...A................................. TTTATGAACTACCCCTGGCGAGGGCGAAGTAGCCTTTA 1441 37 97.3 38 ...A................................. ATTAGTTATCGCCCGAATCGTTGGAAGACGGAACTTCC 1366 37 97.3 35 ...A................................. TGTGTGGGATTGTGACTTTTCTGCCACTGCCTCTT 1294 37 97.3 36 ...A................................. AAATCTGACACCGCATTAACCAAACGCACTAAAGGG 1221 37 97.3 35 ...A................................. TTCCTAAAATTCTCGCCATGAAGCTTTGTAACCAA 1149 37 97.3 34 ...A................................. GGCTACCCCCAATCGAGTCAAATAAGGCTTGGTA 1078 37 97.3 34 ...A................................. TCTAGGAGTAGCTGCATTTCTCCCACCCCTACCA 1007 37 97.3 36 ...A................................. CAGTATCGCCTTCTCTCTATCATCTTGAGTAATTGT 934 37 97.3 35 ...A................................. ATTGCCTTTACAATTCACCTCCATCGAGCCATACA 862 37 97.3 37 ...A................................. CCTCTGGCGCCTATTCATCACCCATCGGATCCCCTGT 788 37 100.0 35 ..................................... ACTGTCTGGCGTCTGGGCCGGACATGACGCGTATG 716 37 100.0 37 ..................................... GCTATATGCCTCTTTAGCTTTCTCCCAGACGTGTGGG 642 37 100.0 32 ..................................... CCTTTGAGCTTTGTTTCAATAATGCCCATAGC 573 37 100.0 37 ..................................... TCACTGACCACTTCATGCAAGATTTCTTTAAGTCGAG 499 37 100.0 37 ..................................... CCAGCCTTGAATCATGTACAAAAAGCAGATGTATTTA 425 37 100.0 33 ..................................... TGCTTCAAACTTCAACACCGAGTACCTCAACTC 355 37 100.0 36 ..................................... CGCTGACACAGCAGGTAGCAAGGAGGCTACTGTTAA 282 37 100.0 34 ..................................... CAATTCCGCCAATATCACAAGTTGGGTGAGGATG 211 37 100.0 33 ..................................... AGGTGGAAAATCTTAAGATTACTGCTCACATGG 141 37 100.0 37 ..................................... AACTCAATTGCCCTAATCAAATCGTTGGGGCGATCGC 67 37 97.3 0 ...A................................. | ========== ====== ====== ====== ===================================== ========================================== ================== 67 37 99.1 36 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : CGCTGTGCAAACTCTTTTAGCAAACGGGACATTATAAATTTACTCCTCAATCAATGCACTTTCCTTATTTTCGGTTATTTCGGGAGCATCCCAATTTTTAAAAGTTAGCTGGCGAATATAATTCACTGCTACACAAACAAAGCTCCAAAGTTCTGATCCGAGGAAGCCTCCGCTCAGACTTCTCTGTGCCCACGCAGGCTACAATTAGTCTGCCTACAATAAGTAGCATCACCTGCAAAAAAATACAATTTGCGCAAATGAGTAGGTGTTTTTGTGAACATGTCAAAAATATGGGCTGAAACCATTACTCTGACTGCTTTTGAACCATATTGTAGCGATAGGGAGGTTTGCGGCATCGCCAAAAAGTTTGCTATGACTAAATTTGAAGGATTTTTGCTCAAACATCACTTGACATCCCAACGGCTGAAAAGCTATATTTCCTCTAGGTCTGCACCACTGAACCTTGAAAATCAAATACAGCAAGCCTTTCAAAACGAGCG # Right flank : CAACCGACACGTGACCCATAACCCTATATAA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : GTTACAACTTCAATTAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 1 94899-92739 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLK01000189.1 Fischerella muscicola PCC 7414 contig00189, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 94898 37 100.0 38 ..................................... ATTTTTTTCTCCTAGTCACATCTCTATTATATATATAG 94823 37 100.0 36 ..................................... CCTTTCTTGGGGATCAAAATCTTTACCACCAGTAAA 94750 37 100.0 36 ..................................... GACCACTTGCCCGGGCTTACGGCGGAAAGTGTAGAA 94677 37 100.0 37 ..................................... TGGAGGTCTGGGGGGCGCTCCAGCTGGCTTCACTACC 94603 37 100.0 35 ..................................... CTGGAGTGTACTGGCTACTTTCTGGGCTTTACTTA 94531 37 100.0 35 ..................................... CCCTTTGAGGTCACCCACAGGGAACTTAGCGTCAC 94459 37 100.0 35 ..................................... GTCTGTTTGTGCTGAATATCTTTAATCTGGTTATT 94387 37 100.0 37 ..................................... TCCTGGTATCTGATGCGGTCAAGAGACACGATGCGGG 94313 37 100.0 36 ..................................... GGCTGGGCTTTCTCGGCTTGCCATCACTTTCTCCTA 94240 37 100.0 34 ..................................... TTAGGTGCCATAATACGCCTCTTTAGCCCGCTCC 94169 37 100.0 39 ..................................... AATTCCCAAAGAGCTATCTCCAGCGGAAAGAGCCTCCAA 94093 37 100.0 36 ..................................... GCGCCCACCCTCGCCTTGGAAGAACGAGCCTTGTTC 94020 37 100.0 34 ..................................... CATTATGTAATCGAAACGGTGCCTCATTTGATTG 93949 37 100.0 33 ..................................... GTTGCCATCTGTGGCACTCAGCGAGGCGGCAAA 93879 37 100.0 41 ..................................... TATCTCGGTAAAACAGAGACAAACCCAGGCATTCAAATAGC 93801 37 100.0 38 ..................................... TCCGTAATATAGTCCATTTTGGCCTCCTCTATGTCTAT 93726 37 100.0 36 ..................................... TGGGTAGCCTTGGGGTATCCTAGTGGAGGCCTTGGG 93653 37 100.0 35 ..................................... GATGGCTCCTATACTTAGGTTGTTGTTATTGTTGT 93581 37 100.0 38 ..................................... GAAATTAATTGATGAATCTTGAAACATTGTTTTGCTCC 93506 37 100.0 39 ..................................... AAGCGCTATTAGCTTATTAGATTGAGAATCGCTTATTTG 93430 37 100.0 37 ..................................... TGTGGATTTTTGAAGAGTACCCGCAGGTCGGGGTTAA 93356 37 100.0 35 ..................................... GGCCTTACAAGCGGCTGTAACTCAACTTCAGCAAG 93284 37 100.0 36 ..................................... AACTATGTTTGGCGGGATTCTAGAAGAAAACAATGG 93211 37 100.0 36 ..................................... TGAAGTGCGATCGCGCTAACTCCGGTACATTGACGC 93138 37 100.0 37 ..................................... ACCGCGATAATAGACGGTGATGCCTTCTACTTCCCTG 93064 37 100.0 36 ..................................... TTCATTGTAAGACTTTAGTTGCCCTAAAGCCAAAAT 92991 37 100.0 36 ..................................... GTGAAAATAACAGAGAAATAAAGGAGTGATGAAATG 92918 37 100.0 35 ..................................... CCGCACCCTCTGATACTGGTACGCTTAAATTGAAT 92846 37 97.3 34 ..................A.................. CGATTTTGATTATCGAAAAGGCGTTAGCTGTTGC 92775 37 91.9 0 .......T................C........G... | ========== ====== ====== ====== ===================================== ========================================= ================== 30 37 99.6 36 GTTGCAACTTACACAAATCCCTATTAGGGATTGAAAC # Left flank : TTCAAAGTTGTCTGATAATTTATTGGACAACCTCAGAGAAATGATTTAAAGCTGGCTATCTACTCAACCTACCGACAACTTGATTGCATTCCTAAGTAACCTTTGTGTAAAGTTATGGTGTTTTTAAACGCAGAGGGACGCAAAGTTAGCGCTGAGGTTCGCAGAGTTTTTCAGAATTATATTCGTTACGAGTTTGTGAAATTTTGTACTAAGGTTGTTGAGGATAATAGGGAATGTTGAGTTTCTGTAGTTGCGCCAACCTGTAGGTGTTTTATATAAAGACTCAAATTTTCTGCCTGAAAGCTATGGCTGTTGCGGGTTTGAACCATTCACATCAAAACAGAGGTTTGCGCTATGTCTGAAACTCTTACCAGTAAAGCTTTTGAGGCAATTTTTTTCAAGTCACTCTTGACACTGCGATCGCTCAAAAGCTATATTTACTCCAGGTCTGCACCACTGAACCTTGAAAATCAAATACAGCAAGGCTTCCAAATTGAGCA # Right flank : TTATAAAGAAGGCTTGTTGAAAGCAATAAAAGTTACTATAAAAGCTCTTCACTTTTTACCCTTCTGCCTTCTGCCTTCTGTCTTCTGTCTTCTGCCTCCTATAACACTCCTTTAGAACTGGGGATCAACCCTGCACGACGGGGATCAATCTCTATCGCCATCCGCATTGCCCTCGCAAATGCCTTAAATGTGGCTTCTATAATGTGATGAGAATTAATCCCATCTAACTGGCGAATGTGCAATGTCATCTGGCTATTACCAGCCAAGGCTACAAAAAATTCTCGTACTAGCTGGGTGTCATAAGTTCCAACGCGCTGGGTAGGGATTTGCAAACCGTAGCTGAGATGGGGACGACCCGAAAAATCGAGTGCTACCTGAATTAAGGCTTCATCAAGAGGTGCAAGAAAGTTACCAAAGCGGACAATGCCTTTTTTGTCACCTAATGCTTTACTGATTGCTTGTCCTAAGGTAATGCCTACATCTTCGTTGGTGTGGTGGTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTACACAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 1-174 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLK01000268.1 Fischerella muscicola PCC 7414 contig00268, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1 27 73.0 34 ----------........................... ATCCACACACCGGACATACCCAACGCATAGGAAT 62 37 100.0 39 ..................................... CGTTTGTGGGAATCATCAGAAGTGGTGGCTCCGCTGCGC 138 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 3 37 91.0 37 GTTGCAACTAAAATAAATCCCTATTAGGGATTGAAAC # Left flank : | # Right flank : CAAACCATATGTTGACCGCGCTTATCGACTGGAGTTTAGAC # Questionable array : NO Score: 7.91 # Score Detail : 1:0, 2:3, 3:3, 4:0.55, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTAAAATAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 1 8247-7987 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLK01000204.1 Fischerella muscicola PCC 7414 contig00204, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 8246 37 100.0 36 ..................................... GCGTTGACGGCGCGCGAGGCATAGACCGTCACGTGC 8173 37 100.0 38 ..................................... TTCAATAAAAAATTGCCAGCTGATGCCAGTGCAGAGTT 8098 37 97.3 38 ...G................................. GACGAGAAATTTTGCTCATAATATCCGCTGCATCGTCA 8023 37 89.2 0 ...G......A............C...T......... | ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 96.6 38 GTTACAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : ATAAAGTCG # Right flank : TTAATTGCAAGAAGTTTGAGATATAGCATTCCTAAATCATTCGCCAGAGACAAGAACCCCGACTTTTTGGAAAAGTCGGGGTTCTGGGCTTTGCGATTCTCACAGAATGATATAGAAGTGCCATAGATAAACCAGAAGCGATCGCCCCATCGCCCCTGCTAACCACTAACAACCAACAAACATGCTGTCGTAAGGAACGTAAAAGCTGTCTTGACAAAGCGATCGCTTCAAAAGAGGAAGATATACACAATCTGATGCTTAGCAAAAGGTGGGTAGTATTTTAGGTTGTGGGCGACTGTTGAGTAGGATTTGTATAGGCGATCGCTAAACTTTTCGGAGAGGGCGTCGATGGGCTTGTAGGTTGAAAATAGTTGTTTATTTCTAAAATTTTTAGTTTAAATCACGCACCTCTTCTAGAAATCAAGATGACAAATCGAGTAATTTTCATTGGATTATCACTATTTGTATACGGAATAGCGCTTAGCTTGCCAGCCCTTGCC # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:0, 3:3, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 36243-42248 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLK01000028.1 Fischerella muscicola PCC 7414 contig00028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 36243 37 100.0 37 ..................................... GATTTCTATGTGGGAAAAAACTATTAATGCGGATTCC 36317 37 100.0 36 ..................................... TAAAAGGATTAGGATACCTTTGTGGTGGTTGTAAGA 36390 37 100.0 32 ..................................... AATCGTCTTTAGCCGCTGCGATCGCCCTTACT 36459 37 100.0 34 ..................................... GCTGCACAAAAACATAAAGATAAAGAAAGAATTA 36530 37 100.0 36 ..................................... ATACGGGCCTGGCTTTATGCCTCCAGCAAAACTTGA 36603 37 100.0 35 ..................................... AAGTCTTTTTTTAAATAATATGCTTATTGATGCTC 36675 37 100.0 34 ..................................... TTTCATAAAAGCAATAACTCTTCAATTGATTGCA 36746 37 100.0 36 ..................................... CGGCGATCGCCTAAATAAGAATCTAGAATTTTAAGC 36819 37 100.0 33 ..................................... TCTTTGGAAGCTTCTAGAATAATTTTTCTTTGA 36889 37 100.0 35 ..................................... CCTAGTACAGACATCCAAGGCATGAAAGTACGAAT 36961 37 100.0 32 ..................................... TCTCTCTTATTTTTAGAGAGAAACCCTTTGGC 37030 37 100.0 37 ..................................... GGTAAGTCTTAATATCTGGAAAAATAGGGACATTAGG 37104 37 100.0 36 ..................................... GGCAAATCGTGCTTAATTTAAGAGAAATTTTTTACC 37177 37 100.0 37 ..................................... TGGATACTTGCCAGATACGGGTGACATGGATATTGAA 37251 37 100.0 36 ..................................... AAAAAATAGCTGAGCAAGAATTGAAATTGCAGAATT 37324 37 100.0 37 ..................................... GATGAATCTGTTGCCACTGTCCTCCATCGGGTACTCC 37398 37 100.0 37 ..................................... TTCGCCTAGAGTCGTTCAAAGTGCTGCTGAGGGTTTG 37472 37 100.0 35 ..................................... TAATATTGCAGAGGTGCTTTTAAGCATATTATTTT 37544 37 100.0 35 ..................................... TCTGTGGTGATTGGTAGGATTCCACAGGGCTCTTT 37616 37 100.0 37 ..................................... CCACAAATACACTTATAACAACTTATTACCCTCTTAG 37690 37 100.0 36 ..................................... AAAAATGTTGTAATCTTCAAACATTTTGCGCTTCAA 37763 37 100.0 33 ..................................... GTAAATTTACCTGATAAAAATGGAGATACATCT 37833 37 100.0 35 ..................................... CAAATCCAAGACCAAGAATGTATAGGGAGCTTTGG 37905 37 100.0 36 ..................................... TACCTATGGAGCAAAGCAGGTCTTTTTCTTGCTGCC 37978 37 100.0 40 ..................................... TATTTCCATCAGAAAGTTTTAGAATTTCAAAGCTATAAAA 38055 37 100.0 33 ..................................... AACAGACGGCTAATCCAAAATTAATGGGGTGGT 38125 37 100.0 42 ..................................... CGGCTACCAGATGGTGAGCTGCTGACCGTAGCCAGTGGTCAG 38204 37 100.0 36 ..................................... CTGCATTTGGCGATTATTTCACGCCTGGGAATTTGG 38277 37 100.0 35 ..................................... TTACGCAACTCAAAAAAAGAGTGCGGCCATAGATA 38349 37 100.0 35 ..................................... GATACCCCCCTGGATAAACCCTAGGGACTTAGCTG 38421 37 100.0 35 ..................................... CGATGATACACCTCTGGTCTACGTGGTCAAAGGGC 38493 37 100.0 37 ..................................... TTAAGGTATCTAGCAGTTCCCTGACTGAGAGTAGAGA 38567 37 100.0 37 ..................................... GACCAAGAGAACCCCAAGGCGGTAATTGTATCCTTGA 38641 37 100.0 36 ..................................... TGGTGCAGATTTGCGGGATGCAAACCTCTATGGCGC 38714 37 100.0 36 ..................................... GGATGCGGGAGGAATCCAAGTGGATGCCCTGATCAA 38787 37 100.0 34 ..................................... ATTGTAACGCCAAACGATGGCGGCAATGGCGGAA 38858 37 100.0 34 ..................................... CAAGGGAGTCCTCTAAGGATCCCTAGGTATTTAT 38929 37 100.0 35 ..................................... AAAATTTTGCATAATAAATTCTGGGTGATTTTAAA 39001 37 100.0 36 ..................................... AAAAACAGTTAGAAGCATGCTAACTTGGGCGCATTA 39074 37 100.0 35 ..................................... CGGGGAGGAAACGGAGGAAATGCCTTTATCTTTCC 39146 37 100.0 37 ..................................... GAGACTCCGAAGTCCACGTGCCGGATATACGGCTGGA 39220 37 100.0 37 ..................................... GCCCGGAACAACAGCAAACTTGTAAGGATCCTCTCAA 39294 37 100.0 34 ..................................... ACCACCAGGAGTAAATGAGGTCACTTTATATCCT 39365 37 100.0 35 ..................................... ACCGTTCCTAGGGAACCCCGCCTGAGCCTGGGCCA 39437 37 100.0 36 ..................................... CACAACTTTAGCGGATTATAAAGAAACAAAAGAAAC 39510 37 100.0 34 ..................................... AAATGGCACCCAAGGAAAAGAATTTATAAATTGC 39581 37 100.0 35 ..................................... CGGCCTGGGATGGCCAACTGGATGCCCCAAGTCGT 39653 37 100.0 38 ..................................... AAATAATTCTTTCTCAAATCCTTCCTTCTTGCCCGCAT 39728 37 100.0 36 ..................................... AATTAATTCGGATTTTTTCGGATAAGAATTTTTTGG 39801 37 100.0 35 ..................................... AAAAAAGCTATCAGCAAATGCTCTTTGGGAATATG 39873 37 100.0 32 ..................................... TCTAGGGTTGCTGTGGGAGTTGCTGTCACGGA 39942 37 100.0 34 ..................................... TGGCAAGACTTACAGCTTTTTTTAGTCTAAAAAC 40013 37 100.0 36 ..................................... CCGGGGGCAGCTAGCGGCACTGGTGACATCTCATAT 40086 37 100.0 34 ..................................... TTGATCAACAAAATCTCTTTAGAGCGCAATCAGC 40157 37 100.0 35 ..................................... GGGACAAGAGCATCAGGATTATCCTTGTATAAAAG 40229 37 100.0 35 ..................................... ACTCCTTGGGATATGCTAGGTATTTATACTCAGAC 40301 37 100.0 35 ..................................... AGGGCGTCCTTAGGCACTCCCCAGGGCTCCCTAGG 40373 37 100.0 34 ..................................... AGGACTTGGAGCGGTCATAAGCCTTCCATGAATA 40444 37 100.0 38 ..................................... GATCTCTATGTGGGAAAAAACTATTAATGCGGATTCCC 40519 37 100.0 35 ..................................... CACTGCTTCAGCATCGCCGCGATAGTACACGGTGG 40591 37 100.0 34 ..................................... CGGAATGGTACGCCCTTTGGCGTAAAAATCACCA 40662 37 100.0 34 ..................................... GCTTCTCAAACTGAGCGCGATCGTACTCAAGTAA 40733 37 100.0 38 ..................................... TCCCTCGGGAGGCTGGCACTTACCGACAACAAAGTTGG 40808 37 100.0 35 ..................................... AGAGCGGGCCAGCTGGATAAGCTACAGGTTGACAC 40880 37 100.0 40 ..................................... ATTGAATTGTTGTCTTTGCGAAGCGTGCATTCTTTGCAAA 40957 37 100.0 41 ..................................... GTTTTTAATTTAATTAATTATGGAATATAAATCTAAAAGAA 41035 37 100.0 34 ..................................... TTCCCTCTTGTTTCTTGGGTAAGGCAACCAATAG 41106 37 100.0 37 ..................................... TGCAAAGTAAGCTTTGGCTTGATTTAAATCCTCAAAA 41180 37 100.0 35 ..................................... ACCCAGGACAGGATCTCGCTAGGGGTGACAGAGCG 41252 37 100.0 40 ..................................... TTTATGATGATTGGACACCATCACTAGATTCTTTGCTGGT 41329 37 100.0 35 ..................................... TGAATGCAACCATGCAGGTGGCCGCCATCCCCAAT 41401 37 100.0 42 ..................................... CGCACGACTTAAATTGGCGCCAATTAGATAGGCATCAATCAA 41480 37 100.0 41 ..................................... TCTTACTTTAATGGCTTTCATTGCCACCCATCCCTGGGAAT 41558 37 100.0 36 ..................................... GACGGATTCTATTACTTAGCTTCTGACTCTGGTTGC 41631 37 100.0 35 ..................................... GCCCTCTACTGCAACCTTGCATTGCTTGAGGTAGA 41703 37 100.0 34 ..................................... GCCACAGTTGTGGGTAATATCTTTTCAATTCCGC 41774 37 100.0 36 ..................................... ATCAGATTATATCTGAATACACAGATAGATTTAGAG 41847 37 100.0 35 ..................................... AATCCTGGTGAAGAAGAATCTGGCAATGCCGGCGG 41919 37 100.0 37 ..................................... GAGAAGCAAGGCTTCCGCTCTTTGCGGAGCCTTGTCG 41993 37 100.0 37 ..................................... TTCCGCCTACAGCTACAGCAGTTATTACAGCACTTAA 42067 37 100.0 37 ..................................... CAACAGTACGCTAACAAGTACGGCTTAAATCCTGGTT 42141 37 91.9 34 .........A...TT...................... GCGAGACATCGCAAGGCTTCAAACCACAGGCTTG 42212 37 91.9 0 .........A...TT...................... | ========== ====== ====== ====== ===================================== ========================================== ================== 83 37 99.8 36 GTTGCAACTTACACAAATCCCTATTAGGGATTGAAAC # Left flank : CCCGAAGATAAACGTCGTACCAAAATCCACAATATTCTCAAGTCTTACGGACAGTGGATGCAGTATTCTGTGTTTGAGTGCAACTTAACTGAAACCCAGTATGCTAAACTGAGGGCGCGTTTGGCAAAACTCATTAAACCTGATGAAGACAGCATCCGCTTCTATTTTCTTTGTGCTTGCTGTCAGGGTAAAATTGAGCGCATTGGTGGTGAAATGCCAATGGATACTACGGTGTTTTTTGCTTGATGATGGTGCAAATCAGTAGGTGTAGAAAAAAAGCAGTCAATTTTTGGGGCTGAAATACTGATCCTGTCTAAGTTAGAGGCTGAATAGATGCTAAATGGGATCTGCACCTTTTCTGTAATTATTGCCCTGACTACATTTGAGCCATTTTATACTCATTTGCTCTTGACAGTGCGATCGCTCAAACGCTATATTTACTCCAGGTCTGCACCACTGAACCTTGAAAATCAAATACAGCAAGGCTTCCAAATTGAGCA # Right flank : CATTTAATCCTTTAATAGTCATCCAAATATAGTACTTATATACTATGTGCTAAAACCAACTTGATTTTAAATCCCCATTCTTTCAACTGTTGAAGAATCTCTACTGTGTTCACTGCCTGTCTGCGTGGTGTAACAATCCTTATTACTTAACTATACTTAACTTATGGCTTTCTTCCTGATTATACTTTGCCGATAGTCACAAAAGGCGATAAGAGGTTTCATAGAATTTTGATATTAATAAATTTGCTTGAATCTTAGGAATTTGTGATAAACTAAGAAAAGAAGTTTAAATTCGGTTGTGCGGTTTGTTTTTATTTGTACTTAGTATTACAGACTTCTCCGGATCTAAAACTCTACGCCATTTGATTCTGGAGATGTTTTATGTCGATTTACGTTGGTAATCTGTCCTATGAGGTTGAGCAAGATGACCTCAAGCAGGTATTTTCCGAGTATGGAACTGTGAAGAGCGTTCAACTACCTGTAGACCGGGAAACTGGTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTACACAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 13774-18917 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLK01000058.1 Fischerella muscicola PCC 7414 contig00058, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 13774 37 100.0 33 ..................................... TGGCAGTTTCGGATAAGGTGAGAAGCGTCGGGA 13844 37 100.0 36 ..................................... AGCAAATGCGCGAGTGGGGAATAAGGGGAGGACACA 13917 37 100.0 34 ..................................... TGCGTAAGCCACTGAAGGAATCGTGGTGCCTAAA 13988 37 100.0 35 ..................................... GGCAGCCCTGTAGAACTCACAAATCAAGTTTGCAA 14060 37 100.0 39 ..................................... GTACAAAATCTGGAATAATTCAAGTAATTTGCCGATTGC 14136 37 100.0 34 ..................................... AAGGACTTATAAGCTATTTTAGCTTTAAAATTCT 14207 37 100.0 37 ..................................... AATTTTTTATGAACGGAGGGGCAGTTGATTCAAAAAA 14281 37 100.0 34 ..................................... AATTAGCTTATACAGCTAAAATCAAGCTTTTAAA 14352 37 100.0 41 ..................................... CAATCATCATAAACCGCGATCGCGCTTCCCATGTGAGCAGT 14430 37 100.0 42 ..................................... TCTTCTAGAGATTCAATAAAAGATTCTGGAATTTCAGCTGAA 14509 37 100.0 34 ..................................... AGTCTTGGTGTCCATTGTCCCTTCTAATGGAATA 14580 37 100.0 37 ..................................... GTTTGATCAACCGTGATATACTCGCTCCATGATTTGA 14654 37 100.0 36 ..................................... TGATAAGATTTAAATTGGAATATCCCCTATATTTAC 14727 37 100.0 40 ..................................... CTTTTTCTAAACGCTTATTAACAGATCCTAGAAAAGCTAA 14804 37 100.0 35 ..................................... CGGTACGAGATCTCCGATAAGGCTCTAGATACGGA 14876 37 100.0 36 ..................................... GGCTGTCCTGGATTCCATGGCGCAACAGGTTGGAGA 14949 37 100.0 35 ..................................... TTGCGGATCCGCTCCAAATACTTCCCCTACAGCGT 15021 37 100.0 35 ..................................... GCGGAAGTGTTGTGCGCGGTGTAGTGCTGCTGGAT 15093 37 100.0 35 ..................................... GATTGTGTAAGAGTCCAAATTCCCAGGCGTGAAAT 15165 37 100.0 35 ..................................... GCTTCAAGCCGTGGCGATCGCAATAATCCCAAACT 15237 37 100.0 35 ..................................... GCCTTATTATCTTGTTGATGACGAAATTCAAGCTT 15309 37 100.0 40 ..................................... CAATTGGGTTTGAAGCTGGCCAACTCCTTAGGCATTCGAG 15386 37 100.0 37 ..................................... TTCACCAGCCGAGAACCGATCCCTTGGCCTCGGTAAT 15460 37 100.0 36 ..................................... TGGATGATCCTCCACCCTTCTATAGCGCAATTATCA 15533 37 100.0 34 ..................................... AGGCTTTTCCCACTACCAGTTGGCATAGCCAAAA 15604 37 100.0 37 ..................................... ATCTGGCACAAATGTTTCAACCTCCGACTCTTGATAA 15678 37 100.0 34 ..................................... CCACATAGAGGCGGCGCTAATGGAGATCCGACGG 15749 37 100.0 41 ..................................... GTTGCTTAAGGGCATCGATGAATTGGGGGTTCTTCTGGAGT 15827 37 100.0 35 ..................................... CCTAGCATCCCGAGCCTCCTCCAAAAGGGTGCGGA 15899 37 100.0 38 ..................................... AAACTAGGGAGGTTACATGACCTACACTTTCTACGATA 15974 37 100.0 35 ..................................... CCATTTTTTCCAATTTGCTTTTATTCCTGTCCAGG 16046 37 100.0 33 ..................................... GCTATTTGGCGCGAATTAGCTGCTTAATATCAA 16116 37 100.0 38 ..................................... ATCTAAATCGTAGTCCACATCAAACCCAGAAAACTTTA 16191 37 100.0 34 ..................................... CCTGATAATGCGGTCAAATTTGAACAATCCTTCA 16262 37 100.0 34 ..................................... CAAAAGCATCCCTTTACCAGATCCAGGAAGACCC 16333 37 100.0 34 ..................................... ATTACAAAGTTATTACAAAGTTATTACACGGATT 16404 37 100.0 34 ..................................... GAGTTACAGCCGCTTGCAAGACCAGAACTGTTTG 16475 37 100.0 36 ..................................... TTGCAAATAATCCTCTAGTGTGCTACTGATTTCAGC 16548 37 100.0 37 ..................................... TAAAAGCGCTAGTTTCATTTATTTGGTCTCCTTTGTT 16622 37 100.0 33 ..................................... TACTTAATCGGTGCGATCGCATTTGATTGGAAC 16692 37 100.0 35 ..................................... TCGACCCCCACGGGTTCGGTTTGGGTCTCATCTCT 16764 37 100.0 38 ..................................... CGTAGCGGTAGAAGCCGCGAGTACGGGATCGGACATGA 16839 37 100.0 35 ..................................... GACCTTGATAGGTTTCTTGAACTCATCCCTTTGGA 16911 37 100.0 32 ..................................... CAGGATCGTGCGGACTGTGCAGAATCTATACA 16980 37 100.0 38 ..................................... ATAAAAGGCAGTCTTAGCAATACCTAATTCTTTGCAAA 17055 37 100.0 35 ..................................... TTTCTCCAGCAGACTTTCCCGCCTGCCTTTGGACG 17127 37 100.0 35 ..................................... AATTCTGTGTGGGCGCTTTTTGTCGTGAAAATAAT 17199 37 100.0 36 ..................................... GCTCCCCTTGGTTTCCCCCCCTTACTCTCCAAGAGG 17272 37 100.0 32 ..................................... CCATACTCCTTACTCGAGACTAAGGTTAAGTA 17341 37 100.0 34 ..................................... AAATGCTTGCCAGATGCTCTTCCAGGCCTTTAGG 17412 37 100.0 34 ..................................... AAATGCTTGCCAGATGCTCTTCCAGGCCTTTAGG 17483 37 100.0 36 ..................................... AGATTGTTAGGAGTGCCAAAGAGGTCAAATACGTCC 17556 37 100.0 39 ..................................... ATTATAAACAACGGTTGTTGCAGACTCATATTGCAGGCG 17632 37 100.0 41 ..................................... GAGCAGCGCTTATTGCGTTTAGCGTTTTTCCACCTGCTATG 17710 37 100.0 34 ..................................... CAAGAAGATCCAGAAAATCGCCAAAAGGATGTAC 17781 37 100.0 34 ..................................... ATCGTATTTGGAGGCTTCTTCTTGCTCGATCTTG 17852 37 100.0 37 ..................................... TGGAGATCGCTTCCAGACTTGCAGACAAAACATTTAA 17926 37 100.0 36 ..................................... CGGTCTTGGTGGCAGCAGCTTCCTAGCATTCTTGGC 17999 37 100.0 35 ..................................... ACTTGCAGGCGATGCCAACACCAAATCAGGTGTAG 18071 37 100.0 42 ..................................... ATTGACGCATGGGAGGGTAAAATACAGGGGAGCTTGCGCAAA 18150 37 100.0 33 ..................................... GCAAGCAAGTCCATCCACCCCATAAAAGCTAGC 18220 37 100.0 35 ..................................... TTGTGCGATCGCAATACCGACTACTCCAGCAGCAG 18292 37 100.0 35 ..................................... GCCTTCAATTGGTGGAAACAAAACAGAATGCCGTG 18364 37 100.0 35 ..................................... GCGATCGTGCAAATCCCATCGCTTTCTAAATCTAT 18436 37 100.0 40 ..................................... ACTACACCCTATTCTTGGAGAGGAAAAACTTATCAGTACG 18513 37 100.0 37 ..................................... TTACGGATTTCTTTCTCTTGACTTTACCTTTGCCGTG 18587 37 100.0 35 ..................................... GCTTAATGCAGAATTATTACCTCTTTGAAGAGTTG 18659 37 100.0 41 ..................................... TCCTTGTTCCAGGATCGACACGGGGTTAGCTGGCTCTCCGA 18737 37 100.0 35 ..................................... TCCCTTAGGCCCTACAGGATATCTAGTTGTCTAGA 18809 37 100.0 35 ..................................... TTCAAGAACAACACGGAAGATATAGGGAATATATC 18881 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 71 37 100.0 36 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : GGTGGTGTGGAAGCGACACCAAAAGTTTGGGATATAGCCGCCGCTTGGGTAATAGTCAAAGCTGCGGGAGGAAGTTGGATCTCACTCAAATCAGAACCTTTTCCTTTGTCTGCTGGCGTTGATTATAGCGATCGCTCTTTCCCCACTTTGGTTGTCAGTCGTCCAGAATTGGTGTCTACATTTAAGCCATGTTTGGAAGAGTTGAAGATTTGAACTTTGGCACTCTCCAAGTTGCTCGATTGACTTTATGGTGCAGATGGGTAGGTGTAAAAATCAGCTAGTCTATAAAAAGTACCTTAATCCGTTTGACAGCAATAGTTTCATCGATTAAGTACCGAAGATAGGTCTGCACCAGTAGTAAAAAGCTTACTATACAAAGCTTTCAGGCTTAAATTTTGAGAGACTTTCTTGTTACCTAATAGCTGAAATGATATTATGATGACAGGTTTGCACCACTGTACCTTGAAAACTAAATACTGTAAGGGTTTGAGTCCATAGCA # Right flank : CCCAGCTAATTTTGCTGATGCTTTGGGCTGAGTTCCGAGTGGAAATGACTTAAAATTCCCTGAAATAGATACATCAGAAGAAGATGAAAATTAACTGTGGGTGATTCTTCCTTAGATTGCTGAAAGATGTTAGTTAAAAGGGGTTAACATTCTTATCTTAAGTTAGCTATAAGCTAACTTTACCTTTGAGCGCAAAATTTATTTCAGCGCTTAACAAGTCTGTCATTCGGTTAGATTGAAAGCGAATGAAATTAACCTAACCTTGCAATATAAAACCACACTGTTGTAGCAATGTGGTGAGATTTACGTATAGCACTTTAAAGTTAGGAGATTTAATTCATAATCACCATCGAGTGGTGTTATTGTAAGCTACAAAGTCGAAGTTCAGCATTCCGGACGAAACACAAACATTTTTTGGACAACAACCTTAAGAAAAAATGATGTCGCAAAAAAATCCCTGGACTATAGTCTTAGTCGTGATCGTGTCAATTGCTGCCACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 26655-26120 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLK01000074.1 Fischerella muscicola PCC 7414 contig00074, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 26654 37 100.0 33 ..................................... TGGACAGTTTGAGTCCAATCGGCAAGTGCTAGC 26584 37 100.0 34 ..................................... GCCCGTTCAACTCGGTGTGGCGACGCTTGGGGTT 26513 37 100.0 37 ..................................... TTAGAGCATAAAGCGAAAACAATAACAAATCTGGTAA 26439 37 100.0 34 ..................................... AGACATCAGGGCGATCCTAGCGATCGCCCGTGAT 26368 37 100.0 34 ..................................... CCCTTGACCCGGCTAAACTTGATACCTTGCCCAT 26297 37 100.0 33 ..................................... TGGACAGTTTGAGTCCAATCGGCAAGTGCTAGC 26227 37 100.0 34 ..................................... TACCAGCACAGCCTTGCTCCCCTATCCGCAAAAC 26156 37 91.9 0 .........AAC......................... | ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 99.0 34 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : AGCAGCCCCACCGGGGTTACGCTTGATTGTTGT # Right flank : CCGTAGTATGCATTTGACAAATTAAAGCTTACTGCTTGAGATTACAACTTAAAGGCGTTGCAGAGAAAGCGGGGTGTTTATATTTTCTGTTTTAATTGAAAACTCAATTCTTGGCGTTCTTGGCGTCTACCCTGCGGGAAGCCGCTTGCGCGTCTATGGTGGTTCATTATTCATCCCCATTTTATGCAACGCCCTGGCATTAATCCCTATTTGTTCACGTCTTGTAAACTTACACAACAACCGCCAAGGATTTTAATCCTTGGCTTATAGTTAAAGTCGTCTCAAGACGACTATAAAATTTCTTAGTCTACTTCAAGTAGACTTGAACTATTAGCCCGCAGTTTACTTGCGGGCTTTTGGGCTTTCGGGCTTTCAGGCTTGCATATTTAAAAACAAAAAGGTAAGGGAAAAATTTTTCCCTTACCCAATTCCCATTACCCTTGACACCGAAGCTTTAGTAAGCTCTGCGAGTAAATTGGTAGTACAAGAAAATTGCAATA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 4724-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLK01000075.1 Fischerella muscicola PCC 7414 contig00075, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 4723 37 100.0 34 ..................................... TTTTTGAAAGCCTTACCAGCTAAGGCTTTTGGAG 4652 37 100.0 36 ..................................... TACCGCTTTCGAAAAGAATTGGGAGATATTTTTCCT 4579 37 100.0 35 ..................................... CCATTGTAGGTTAGCTATGCTTAAAGGCTTTATTA 4507 37 100.0 37 ..................................... TCCACCACGGGTGAAACAGGGGCTTCGGGTTGGTAAA 4433 37 100.0 36 ..................................... GTAAAGGTATCAATATTTTTTGGATCTTGTAAATTC 4360 37 100.0 37 ..................................... TTTTTCTCTTTTGCGCCACCAGAACTACTATCGTTGC 4286 37 100.0 34 ..................................... GAATAGTTTTTTAATTCAAGAGTTAGGATGCCAT 4215 37 100.0 34 ..................................... CTAGAGTACTACGCGATAGATATTACTAGCCGAT 4144 37 100.0 37 ..................................... TGCCTAAAAGATTTCGATTTCAATTTAACTTAAAAAG 4070 37 100.0 37 ..................................... GCGACATAGGAGATGAGATCCAACCCAAAGCCATGGG 3996 37 100.0 38 ..................................... TTAATCATCCATAAGTAGGTATCTGCAATATCTTTAAA 3921 37 100.0 34 ..................................... TGGGAACATTGGGCTGATTATTGGAAGTGGCACA 3850 37 100.0 32 ..................................... GTCCTTGTATAAAAGAACACCCTGGCGTACGT 3781 37 100.0 35 ..................................... GAAAACAATTAAATCGAATTTTGGTAATAGATTTA 3709 37 100.0 35 ..................................... CCCTTCATCCTTAGTGATCGCCTGAAAAATTCTTT 3637 37 100.0 36 ..................................... GATGACGAAATTCAAGCATCACCTTACAAACAATTA 3564 37 100.0 35 ..................................... CCGATGGGTGGCCCGTTGCGTACAGAATAGCGATC 3492 37 100.0 36 ..................................... ACCGGCGACAACCGTAAGGGCCGCTTCATCGATGAG 3419 37 100.0 34 ..................................... TGCAATCCCGATTCTCCTGGTGGAATTCCATTAA 3348 37 100.0 35 ..................................... CTTCTATTGTGGATTTACCTTCAACTATAAATATC 3276 37 100.0 39 ..................................... ATGCAGGGGGCTGGCACGGGTGCGGTGCTTGAAAATCGC 3200 37 100.0 34 ..................................... CCACATCGAGGCGGCGCTAATGGAGATCCGAAGG 3129 37 100.0 35 ..................................... CTACAAGCATTTCTTGATAGAAAGATACATAAAAA 3057 37 100.0 36 ..................................... ACTTCATTTACCCCTGGTGGTGACCCATTTGTATAA 2984 37 100.0 38 ..................................... CTACCTACCCAAACTGGGAGACTGTGCCCCCTTTGGAA 2909 37 100.0 34 ..................................... CAGGTACTGGAGCCCGAGAAAGGCAGCGGCAACA 2838 37 100.0 37 ..................................... GGATGGAAGCAAGGGATAATCTATCTGTTAAGAGACA 2764 37 100.0 36 ..................................... AAATTATTACACCCTTGCTTGGCTGGATCGCTGGCT 2691 37 100.0 37 ..................................... AAGCGCTTGCACATTTGCATCATCATGAATACTTGAT 2617 37 100.0 33 ..................................... GCCCACGTAGGCGACATAGGCGATAAGGTCGAC 2547 37 100.0 32 ..................................... TAAGTGCTGCTAGAAACACGCAGACTATTCAA 2478 37 100.0 34 ..................................... TCATTAAATCCGATTGCCAACTTCTGGCGGCGCG 2407 37 100.0 36 ..................................... TCTTTTAATTATTATTACGAGCTTATTTGTAATAAA 2334 37 100.0 37 ..................................... AACTACTTTATCTACGTTTGTGATCAATCCATCTATA 2260 37 100.0 36 ..................................... ATCGCAATATTTCTCTGGAGAAGGCGCGATTCAATG 2187 37 100.0 35 ..................................... GGCAATAACGAAATCAGCAAGAGACGACGGACGCG 2115 37 100.0 38 ..................................... AAAATATCTTTGGAAAACATAAATCAGGAAAAGATTAT 2040 37 100.0 35 ..................................... TTTGGTATTTGTCTTGTATTAGCTGTACCAATAAT 1968 37 100.0 32 ..................................... TTTCACCACAAACCTAGCTTGGAAGAGATTGA 1899 37 100.0 35 ..................................... AATAAATCAGTTCCATCAGGCTCTGATGGAATTTG 1827 37 100.0 38 ..................................... CTTGCATTCATGGTAGTTTGTAGAAGCTTCATGATGAA 1752 37 100.0 39 ..................................... TCAAAGCTTGTATTATTTATTTCAAATCCCAATCCATTT 1676 37 100.0 34 ..................................... AATTTATTTGGAGGATCAGCAATACCTCCAAAGC 1605 37 100.0 35 ..................................... AAGATGCAACAACTAACAGATTACAAGAGCAATTA 1533 37 100.0 35 ..................................... GTAACGATCGTGGTTGCAACCACCCCAGTGGTTGC 1461 37 100.0 36 ..................................... AATTTGATCGTCGTATTTGGAGGCTTCTTCTTGAGT 1388 37 100.0 36 ..................................... CTTCGAGATCTTCTATCTCAATCAATACTGCTTCGA 1315 37 100.0 37 ..................................... TACGGCGAAATTCAATTTCGCGTAAACGGGGATTTAG 1241 37 100.0 38 ..................................... AAATGGATCAACTAATCCTGCTTCACACAATTTTTTTA 1166 37 100.0 35 ..................................... CATCTTCAACAACTTCTTCAACCGCAACCTCTTTC 1094 37 100.0 34 ..................................... AAAGTGGTTGCCCTCATACTTCCAGAATTTTGCT 1023 37 100.0 40 ..................................... CTATTTCCCCTCTGGATTTATAGGGGAATTTTTGCTTCAA 946 37 100.0 34 ..................................... GGTTTACCCTGGCGATATTGGGCATACGCAATTT 875 37 100.0 31 ..................................... ATCAAATCCTTGAAGGTGCAGTGGAAGTAGA 807 37 100.0 36 ..................................... CTCTTGTGGAAGGTATGGCAGATTATATAGGAATGC 734 37 100.0 35 ..................................... TTACCCCGAACGACATGAAAGAGCCCTAACCAAAC 662 37 100.0 33 ..................................... TACAGTTTTTCGCTCTGCAATATTTGCAGATGG 592 37 100.0 34 ..................................... ACTTTATCTACAGGTCAAGTTTTGGATGGTTTAA 521 37 100.0 37 ..................................... AAGCGATCTCCTTGATATCAAGGAGAAAATTGATTGG 447 37 100.0 35 ..................................... TTGGCGTCGCCAACTTCAATCCAACGTTGTAATGT 375 37 100.0 36 ..................................... GTAGTCTAGGTACGAGGAATCTATGGAGATCCAAGA 302 37 100.0 34 ..................................... TCGATTAGGGATGCGATTGCCTGTCGTGAAACAA 231 37 100.0 36 ..................................... ACTCCAATTACTTATCACGTGTACACGTAATAACAA 158 37 100.0 34 ..................................... AAGACTCATGGACGTGCTATTACGAAAGCATGGC 87 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 65 37 100.0 35 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : CCTGACGGTACAGCAGCAAATATTCAACGCACAGACTCAATCAAAGATGGTGTGATTAAAAACTCTTGGACGATCGCAACTGGTGATCCTATGGGTAAGCATAAAATAGAAGTTTATGTTGGCGATCGCCGTATTGCTACTTTTGAGTTCGAGGTGGTTCCAGCTAAACGGCAAAAGCCAGCTCCAAAAGCGTAGTTGCAAGTTTTGCTATAGTCGATAAATAAAGATTAATCTCTCTTCAGCTTAGAGTTGGTGCAAACCTGTAGGTGTTTAAAAAAAGCAGTCAAATTTAATGGCTATAAGCCCTACCTGTTATGGCTTTGAACCCTTTTACACTCAGATAGAGGTTTGCACCAATTCTGAAAGTCTTACCAGCAAAGCTTTTGACCTATTTTTTCATAATTCATCTTGACATCCCGATGGCTGAAAAGCTATATTTTGTCCATGTCTGCACCACTGAACCTTGAAAACCATATACAGCAAAGCTTCTGAATCGAGCA # Right flank : CGGTGGCAAGACCGTGGCGTGTTTGTGTCGATGACTGTTGCAACTTCAATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA //