Array 1 3291-1730 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRWE01000054.1 Flavobacterium psychrophilum strain TN contig58, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 3290 46 80.4 28 CAAA.A.T..AA..A............................... TTGGCTTACTTCATAACAGGATATTGTG 3216 46 100.0 30 .............................................. ATTAATGCGATAATTATCGAAGGTAGCACT 3140 46 100.0 30 .............................................. AGGACGATTATAAATTTATGCTAAATATTA 3064 46 100.0 30 .............................................. AGATATATCTAATACTAGATCGTACGACAG 2988 46 100.0 30 .............................................. AAAAATAATATCCAAAAACTGAAAGAGAAT 2912 46 100.0 30 .............................................. ATTTAATGTAATTATACCCGAACTAGCTCC 2836 46 100.0 30 .............................................. TATATCCATATTTGAATACACATTGTCACC 2760 46 100.0 29 .............................................. CGTTTTCGCACGTTAAATCAAAGTACTAT 2685 46 100.0 30 .............................................. TTTTAAAAAATGGTTAACTATGATAACTTA 2609 46 100.0 30 .............................................. TTTACTAAGCTAAATGTCGTATATCAAAGT 2533 46 100.0 30 .............................................. AGCAAATACCTTGTAGCCTGTTACGTGTTC 2457 46 100.0 30 .............................................. AAAATATTTAGCAACATAGATGATTGTTTT 2381 46 100.0 29 .............................................. TTTTACTTTTTATTTAAAGCAACTGTAAT 2306 46 100.0 30 .............................................. TAATAAGTTGCTCGTTTCCGTTTATTCCGT 2230 46 100.0 30 .............................................. AGTAGGTAATGTATTCACAATAGACATATT 2154 46 100.0 29 .............................................. AAAACTAAATACATACAGCGTACGCATTC 2079 46 100.0 30 .............................................. TTTCTCTTTTTGAGTCTTTTATAGCTCTTT 2003 46 100.0 29 .............................................. AGTAATAGATGCCCGGTTTGAATGCCGTA 1928 46 100.0 30 .............................................. TCATCATCTGATGAAAATTGCTGTTCAATA 1852 46 100.0 31 .............................................. AAGCATAATAGAATAAAAGAAATACACAGCA 1775 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =============================== ================== 21 46 99.1 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : AAATTTGCGTGGTACATCAAATTAGAAACGCTTGTAGATATGTGGTATGGAAAGATAAAAAACAATTTACATCCGATATGAAACTTGTTTATACCGCACCAACAAAACAAGCTGCCGCATTAGCTTTGGAAGATTTTGCTCAAAAATGGGAATCCAAATATGGTTATGCCATCAAATCCTGGAGAGAAAACTGGGACGAATTAACCGTGTTTTTCGACTTCCCGCTAGAAATTCGAAAAATAATCTATACTACAAATTTAATAGAAAATTTAAATGGAAAAATTAGAAAATACACTAAAAATAAAATGTCATTCCCTACTGATGATGCGGTTCTAAAATCAGTTTATTTAGCTTTAAAAGAAGCAACAAAAAAATGGTCAATGCCAATACAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTTTGCGGGATAGTGTCAT # Right flank : ATACCGCGAGTTAATCGTTTGATATGTTGGTAATTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTGTGTACTTCGGCATTTTCTCTGCTGGCACAAAACCGCATATAGATCGAAAATTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTGGGCAGGTCAAAAAAAACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 11815-12339 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRWE01000011.1 Flavobacterium psychrophilum strain TN contig11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== =========================== ================== 11815 42 97.6 27 ..................................T....... ACTGAAAAAAGCACCCCCTCCAATAGC 11884 42 97.6 27 ..................G....................... AGCTGCAAAAGCACCCCTTCCAATAGA 11953 42 97.6 27 ..................G....................... GCCTGCAAAAGACCCTTCTCCGATAGT 12022 42 100.0 27 .......................................... CTCTGCAAAAGACCCATCTCCAATAGT 12091 42 100.0 27 .......................................... ACTGAAAAAAGCACTATTTTCAATATC 12160 42 100.0 27 .......................................... ATCTGCAAAAGCCTCATCTCCAATAGT 12229 42 97.6 27 ............................A............. GCCTACAAAAGCATACCTTCCAATAGA 12298 42 78.6 0 ...TG.............A.....C.........TT.TTG.. | ========== ====== ====== ====== ========================================== =========================== ================== 8 42 96.1 27 AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : GGTTAGCCGTTCGAAGCTAACCTTTTATTGTGTAAAATATTTTTTTTAAATTATTGTATAATAATTGTTTTTGTTGCCTTACCTTGGTTTGTTATTACTTCTACAAAATAATTGCCTTTTGCAAAGCTTGAAACATTTATTTCTGAATGATTAGTTGTTTTGATTAACTGCCCTAATGTGTTGTAAAAATTTACTTTTTGTAATTGTAAGCCCTCTTGTAAGGCTATGTTTAAAATTTCTGAAACTGGGTTTGGGTATATTTTTAAAGCACTTTCTATTGCAAATGAATGATTAGAAAGTAAATTACCAGAAATAGGGCTGAAATTTCTCCAAACCGCGGCTGCCTGATAAACGGCTTGAGTACCAGTAGGAACATTTAAAGCACAGTTTGACTGAGTAACATTACCGAAGACATTTGCATTAATAACTAAAGGCATTGTAATGTAGCAGTTTACTGTGGTTAAACTACGACATTTTTCAAAAGCATAATTTCCAATAGC # Right flank : AATGTTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTTCTGCTGCTCCAGTAAAATTAGCGTTTCTAGCTACCTTAACAGTAAAAGGAGCTGTTGAAGAAGTAATAGTATAATTTATACGGTTTGCTGTAAAATCTTGTGCTATTCCTAAAAAAGGAATTAAAATAAGAAATAATAATTTTTTCATGTTTTTTGTTTTTAATTAAAAAATTATGTGGTTTACAAAAGTAAGCTAGATTTAGAATAAATACAAATAATACTTTGTTTTTTTGAGATTGGTCTTTAAGTAGGTGTTGTTTCTATATGCCTGCAATTGTCTGATTTTGCTGTTCTTTTTGTTATATTTGGCTTTGCAAACGATTAATTAGGGACTAAAATTCATCAAAATATTGCTTAATGTTCTTTTTTTTATTTAGAAGCTTTTTTTGTATAATGTTATGAATAGAAAAAGGTTAGCCGTTCGA # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.12, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : AGTCACAGAATTAGGAATGGTAACTGATGTTAAACCAGAACA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 20363-20672 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRWE01000011.1 Flavobacterium psychrophilum strain TN contig11, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 20363 34 100.0 35 .................................. CCAGAACAGTCAAAAAAAGCATAATTTCCAATAGC 20432 34 94.1 35 ...T....................A......... CCAGAACAGCCTGCAAAAGTATCCTCTCCAATAGA 20501 34 94.1 35 G......................T.......... CCCTTACAGCGATCAAAAGCAGAATTTTCAATAGT 20570 34 94.1 35 ........................T...A..... CCAGTACAACAGAAAAAAGAAGCCTCTCCAATAGT 20639 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== =================================== ================== 5 34 96.5 35 AGTCACAGAATTAGGAATGGTAACCGATGTTAAA # Left flank : GGTTAGCCGTTTGAAGCTAACCTTTTATTGTATAAAATATTTTTTTAAAATTACTGAACAATAATTGTTTTTGTTGCCTTACCTTGGTTTGTTATTACTTCTACAAAATAATTGCCTTTTGCAAAGCTTGAAACATTTATTTCTGAATGATTAGTTGTTTTGATTAACTGCCCTAATGTGTTGTAAAAATTTACTTTTTCTAATTGTAATCCCTCTTGCAAGGCTATGTTTAAAATTTCTGAAACTGGGTTTGGGTATATTTTTAGATTACTTTCTATTGCAAATGAATGATTAGAAAGTAAATTACCAGAAATAGGGCTAAAATTTCTCCAAACAGCCGCTGCCTGATAAACAGCTTGCGTACCAGTAGGAACATTTAAAGCACAGTTTGATTGAGTAACATTACCGAAGACATTTGCATTAATAATTAAAGGGCTTGTAATGTGGCAATTTACTGTGGTTAAACTACTACAGTTTACAAAAGCATAATTTCCAATAGC # Right flank : ATTATTGCAATGTTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTTCTGCTGCTCCAGTAAAATTAGCGTTTCTAGCTACCTTAACAGTAAAAGGAGCTGTTGAAGAAGTAATAGTATAATTTATACGGTTTGCTGTAAAATCTTGTGCTATTCCTAAAAAAGGAATTAAAATAAGAAATAATAATTTTTTCATGTTTTTTGTTTTTAATTAAAAAATTATGTGGTTTACAAAAGTAAGCTAGATTTAGAATAAATACAAATAATACTTTGTTTTTTTGAGATTGGTCTTTAAGTAGGTGTTGTTTCTATATGCCTGCAATTGTCTGATTTTGCTGTTCTTTTTGTTATATTTGGCTTTGCAAACGATTAATTAGGGACTAAAATTCATCAAAATATTGCTTAATGTTCTTTTTTTTATTTAGAAGCTTTTTTTGTATAATGTTATGAATAGAAAAAGGTTAG # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACAGAATTAGGAATGGTAACCGATGTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //