Array 1 861-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTXB01000063.1 Enterococcus faecalis strain CVM N59462F N59462F_S26_L001_R1_001_contig_63, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 860 37 97.3 29 ....................................G AACAACGTGGATTCAAACATGTTGGGACA 794 37 97.3 29 ....................................G GTTTATATTTGTGTAAAGCGAAATATCCT 728 37 100.0 29 ..................................... GTTAATGAAATGGGTTGACAGTGATACTA 662 37 100.0 29 ..................................... AATTTTAAAATACGGCAGACCGATAACGA 596 37 100.0 29 ..................................... GGCGAATAGAAATTCAATCCCACTGTTAT 530 37 97.3 29 ....................................T CATGTCAAAGGGCGTTCTCGACCAGCAGA 464 37 97.3 29 ....................................T TTTATTACGGCAGGATACACAGAATCAAA 398 37 97.3 29 ....................................G ATGAACCGCAAATAAAAAATACAAGAAGC 332 37 100.0 29 ..................................... AATTATTGAACGCTTTTTACAAGACTATG 266 37 97.3 30 ....................................T ATGAAATTTTTAGACTTATTTGCAGGTATT 199 37 100.0 29 ..................................... TCAATGAGTATCGCTAATTTTTTAGCACC 133 37 97.3 29 ....................................G CATCACGTTCTGCTTCAACATCGAGCATC 67 37 91.9 0 .........................A..G.......G | ========== ====== ====== ====== ===================================== ============================== ================== 13 37 97.9 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Left flank : ACATATATCCTCATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAAGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTCGCAAGAAAATACCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCACAAACTTTACAAGAAACCTGGGCAAAGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTATAGTGAAATCTGGCTTGCTGTTACAGCTACTAAATAAAGAAAACCCACCATTGAAAAATGGTGGGTTTTTCCGCCAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAAATTAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGA # Right flank : GTGCAACAAAAGAATATTGTTGTCAATGGTG # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 208-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTXB01000060.1 Enterococcus faecalis strain CVM N59462F N59462F_S26_L001_R1_001_contig_60, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 207 37 100.0 29 ..................................... ATGTTTATTAATAAGTTAGCTAAAAAAGC 141 37 100.0 29 ..................................... GGCTTGTTGTTACGTGTATTACAGACGGG 75 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ============================= ================== 3 37 99.1 30 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : GCACAATTAAATGATAAACCAGAAGTCAAATCAATGATTGAGAAGTTAATTGGAACAATTAGTCAATTAATTGGCTATGAATTGTTGGAACATGAAATGGATTTGGAAGAAGATGGCATCACTGTGCAGGAACTTTTCAAAGCTCTTGGAATCAAAATCGAAACAACGAGTGATACGATTTTTGAAAAAGTTATGGAAATTACACAAGTACATCGTTATTTATCAAAGAAAAAATTATTGATTTTTATTAATGCGTGTACGTATTTGACAGAGGATGAAGTGCAACAAGTGGTAGAATATATCTCTTTAAATAATGTGGATGTCCTGTTTTTAGAACAAAGGGTGGTCCAGAACAGATTCCAATATATTTTGGACGAAAACTTTTATTTGAGTTATGAAAAAGCTTAAATTGTTACTGATTAGTGGTTCATTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAGTACGGAACTTTGGAAAAAAATAATTCTCCGAG # Right flank : GGACACATTACACAACGCTCGTTTTAGAGTCATGTTGTT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1-365 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTXB01000072.1 Enterococcus faecalis strain CVM N59462F N59462F_S26_L001_R1_001_contig_72, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 1 36 94.6 29 -...................................T AAAGCAGCTTCTAAAACAGAAGATGAAAT 66 37 100.0 29 ..................................... ATTGGTAAGATTACATGACCTTTAGTACG 132 37 97.3 29 ....................................A AAGAAATGGACACATTACACAACGCTTTC 198 37 100.0 29 ..................................... TGCAACAAAAGAATATTGTTGTCAATGGT 264 37 97.3 29 ....................................A TCAGTTGTCGGGAAATTGCCGGAGCGTGG 330 36 97.3 0 ....................................- | ========== ====== ====== ====== ===================================== ============================= ================== 6 37 97.8 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACG # Left flank : | # Right flank : | # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1-498 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTXB01000066.1 Enterococcus faecalis strain CVM N59462F N59462F_S26_L001_R1_001_contig_66, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 1 36 97.3 29 -.................................... GGTGCACCCGAATGCCACACTTTCTTTTA 66 37 97.3 29 ....................................G TTAGCTGGGCGGTTCAATGTGGTCATCTA 132 37 97.3 29 ....................................A CGTTTGATTGCAGACATTTGTAAACGATA 198 37 100.0 29 ..................................... TGCGATAATGTTTTTCAATGTTTTTGTCA 264 37 100.0 29 ..................................... GCCTGCATTAAGAAATAGCTTGATTGTTC 330 37 97.3 29 ....................................G AATAAGTATCCAGTAGTTATGAAGGCTCT 396 37 100.0 29 ..................................... GCTAAAGGAATTGATGATTGATATTGTGT 462 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ============================= ================== 8 37 98.3 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : | # Right flank : AACTACTTTGAAGTAGTAACGAGTGCCTTTGTTTTATAGCCATGTTGTTAAAAAACAAACTATCACCACAAGCAATCCGTAATTTTTATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCGATTTTCGAAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGTAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 6-174 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTXB01000076.1 Enterococcus faecalis strain CVM N59462F N59462F_S26_L001_R1_001_contig_76, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 6 37 100.0 29 ..................................... TCAATGAGTATCGCTAATTTTTTAGCACC 72 37 97.3 29 ....................................G CATCACGTTCTGCTTCAACATCGAGCATC 138 37 91.9 0 .........................A..G.......T | ========== ====== ====== ====== ===================================== ============================= ================== 3 37 96.4 30 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Left flank : GTATTG # Right flank : TTGATAGGTGCGCCAAAAATCTTTTTTCTGTTTTAGATCCTTGTTATTATCTTCGAATGAAGAAGAGGAGTGCTAAAAGGTTACTGTTTCCAGTAGCCTTTTTTGTTATTTTTATTTCTTTCATTACCAAAGTTTAGTAAAATGAAAGTATCTTAAATTTTAAGTGAAATAAATTTAATAAAGGAGAACAATGATGGAAGGAAAGATTGTTTCAAGTACGAGTTCAGCCCAAAGTGCTGTCTCAAAGTTGATTGGTATCAACGAGCGTTTAGAAGCCCCAAAGGTAACCTTTTCAGGAAGTACAGTTTCAGGAATGACCAAAGGCAAACAAGTAAATGCTCAAGTTTTAACAAACTTAACGGATTTAACCAATTGTGTCTGGAAGCAAGCTGAGAAATTCCCTCAAATTGCAGAAAAAATTGCTTATCGTGACCAACAATCTGCGGAACAATTCCGAGGAGGTGGGCGTTAAGTATGAGTGAAAAAGAGAGAAACGATGA # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 4354-4654 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTXB01000076.1 Enterococcus faecalis strain CVM N59462F N59462F_S26_L001_R1_001_contig_76, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 4354 37 97.3 29 ....................................A AGTGGAGCGTTGTTTGTTCATTACTATAA 4420 37 100.0 29 ..................................... TACGAAAAATACTGGAGCTCCCTCGTCCA 4486 37 100.0 29 ..................................... ACTCCACGTGCTTCCATTTCAAAAGTTAG 4552 37 97.3 29 ....................................A TTTTCATAGTGACCATTTGCAATATCTAC 4618 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ============================= ================== 5 37 98.4 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : GTAACGATGGGGAAAGTAAACGCTGTATTAAATTCAGGAGAAGAACTATACGATGTTTCAGAGGATAGACGTTTTGCTGTGTTAGACATGGGGTTAGAAGATTTAATGAAAATAGAAGAAGTTTGTAAGGAATATAAAAAACCAATACCAACAGAATTTAAATTAATCTATAACGTTGAAACAACAAGCTTTAATACAAAGTATAAATATGACCTTCAATATTCCAATAACGATGCTTTAACTGATTATGATCTCTTTATGTCGTGGTATGAAGAAGTTAAGAAAGAGGTAGAAAATCCACCATTGTAATTTGGATTTTAATAAATTTTCATTTTTTCTATTTATTCGAACAAAAAAATGGCTCTTTGTCAAATAATGTTGGTAAAGAGAAAGTTTGGTATAATGAAAGAGTAGAAAGGAATCAATACATTTTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGAG # Right flank : TAGAATTTAGTTAAAACAAACAAATTGAAGTTTTAGAGTCATGTTGT # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //