Array 1 123760-123060 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZMO01000003.1 Escherichia coli strain HT2012EP02 Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 123759 29 100.0 32 ............................. CCGCCCGCGATCGCGTCTTCCAGGGTAATGAC 123698 29 100.0 32 ............................. CGATTGCTTGATGCTGGTGTGCTGGTACCTGT 123637 29 100.0 32 ............................. GTCCCAAGTATGGAAATTTTTGCATGGATTGT 123576 29 100.0 32 ............................. AGTATTAAATCCAGACTGTATGAAAACCTCAC 123515 29 100.0 32 ............................. AAAAAATGCGACAACGGCAGCCATTCCGATCT 123454 29 100.0 32 ............................. CACTGGACCTGTTTTGCTATTGCCACACGCTG 123393 29 100.0 32 ............................. AATACGCTGGATAAATTAATGAGCCAGGTATC 123332 29 100.0 32 ............................. TGCGCCCTCGTCCGGTTTCATTAGCCGCTTTC 123271 29 100.0 32 ............................. AAAAAACAGACTGGATGCAGGCAGACACTACG 123210 29 100.0 32 ............................. CTGAGCGATCCAGCGCTCGACTTTGATCGTGA 123149 29 96.6 32 .................A........... GGCGCACTGGATGCGATGATGGATATCACTTA 123088 28 75.9 0 ..A........C..T....T-.G.....C | C [123063] ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGGGAAATACAGCCGCCGGCCCCACCTGAAGATGCGCAGCCTGTTGCTATTCCACTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGCTGGAAGTCCGTGCAGGAGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATATCCGGACTGGCGGAGGAGGGCAATGTAGTGATGGCATGGGCAACGAATACAGAATCGGGATTTGAGTTCCAGACATTTGGAGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTAAAAACAAGGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATCAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : AGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCTTTATCAATATGTTGCTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 150433-149245 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZMO01000003.1 Escherichia coli strain HT2012EP02 Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 150432 29 100.0 32 ............................. GGCTGCGTATGAGCACTAGACACCCGGTAATT 150371 29 96.6 32 ............................T CCATTTCAATCTATACCAGATGGAATGTCACC 150310 29 100.0 32 ............................. ATGGCGCGGTTTGTGTGTGGCTGAGAAATAAG 150249 29 100.0 32 ............................. CCGTTCCCATACGGGCTATGGGGCAGCGATGG 150188 29 100.0 32 ............................. CCAACACGGCGACCATGACTAATTATATGGGG 150127 29 100.0 32 ............................. GTCGCGCGCGTCCAAAAGATAACCAGTTTGTT 150066 29 100.0 32 ............................. GCTCCCTGTCGGTTGTGATTGATAATGTTGAT 150005 29 100.0 32 ............................. ATATTTCAGGCGTTGGCCTGCGCGTGACTGTC 149944 29 100.0 32 ............................. TGATCCAGTGAGTACCGATCCGGGAACAACCG 149883 29 100.0 32 ............................. AGTCCACGCGATGGGCGGACACCCGCCGCGAA 149822 29 100.0 32 ............................. CGGCGGTGGTTGTCCTGGCTGAACGTCTGCCC 149761 29 100.0 32 ............................. TTCCAGCAGCATCTGCTATTGATTGGATCTTA 149700 29 100.0 32 ............................. CTCACCGTGCCGCAATCCGGTATGAATAGCAA 149639 29 100.0 32 ............................. CCGACGTACAACTACGGAGGCGTGTCGATTCC 149578 29 100.0 32 ............................. TGGGGGCGATTGACGAGCAGGCGCGTACCGTT 149517 29 100.0 32 ............................. CAATCCACGCCGAAGCGCTGGAAATGGAAAAA 149456 29 100.0 32 ............................. TTTACCTGCTCGGTGATATCGTCCTGCAAATC 149395 29 100.0 32 ............................. CGATCTTTTCCTACCTGGTACAATCAGTAAAT 149334 29 93.1 32 .T..........G................ GGTACAAAAGAGGCCCCATTCTGGCAGGGCTC 149273 29 89.7 0 A...............T...........A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTGAAGACTTCTACTCATTTATATTCTTTGTCGTCTCTGAAAAACCTCCATTTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCACTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATTGGTTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAACCGTTAAGAAATTTTAATATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTGCTTAAGTATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //