Array 1 1-288 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANPG01000234.1 Haloferax sp. BAB-2207 Contig234, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1 23 76.7 34 -------....................... GAGCGGTTTTGTCGGTCGTGTGGTGCTGATAGGT 58 30 100.0 37 .............................. GCGTCACGTGGGGCACCGACGTGACGCCGGCCGCCTG 125 30 100.0 36 .............................. CCTCTCGAGGGAGACGAGGAGCGCCGCGAGGAGTGC 191 30 93.3 36 ...A..................A....... GAGGACTGGTCTGAGAGCGACGGCTGGACTGGAGGC 257 29 86.7 0 ............-...G.C...T....... | A,CA [277,279] ========== ====== ====== ====== ============================== ===================================== ================== 5 30 91.3 36 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : | # Right flank : CGCGTGGACTTAGTGTCGATTGTGCCGTTTGATACCCCTCCCCCGAACTATTACAATAATGGAGTTGAGATTGCACTTGTGCTTTCTCATCCGACCGAAAAACCCCAAAGCGGGCTGCGTTTTTCGTCTCTTTCCAGTGGTATCGAAACCGTGGTGATGGAAGTGATGCGATGAGAGTACTGATCGATTTGGAGGCAGAGATGGACGCGGCCTATGATACAGAGTATCACAGCGGACTCCGGAGGCGGATGTGGGACGCGCTTCGCGACACCCCGTACGATGAACATGGTACGGAAACGCCCGGGTTCTCGTTCTCCAACCCGTTCCCGTGGGGTGAGTTGGAGGAGGGCGACGAGCGCCAACTGCTGGTTGCCTCTTCCCGTGAGGAGCAGTTGGCACACATCGTCGCCGACCTGCTTGAGAACCCCGAGATACACGTGGGGTCGATGCCGTTCAGCGTGACTGACACGCGGGCACTCGATCCTGACGTCGGGCCGCCG # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.50,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 5-372 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANPG01000698.1 Haloferax sp. BAB-2207 Contig698, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 5 30 100.0 40 .............................. CCTTATCGATGGGCATCTCCTCCTTCGCATCCTGCACAGA 75 30 100.0 37 .............................. CGAGCACGACCCTGCGCCGTTCCGCGTCGTCCTCGAC 142 30 100.0 35 .............................. CGCCGGCTCGACAACGGCGCGCCCGGCCGCTTCCG 207 30 100.0 38 .............................. CTCATCACACGCGGCAAGTGCGTGGTCGATGGCGTCCA 275 30 100.0 38 .............................. CGTCTGTCTCAAGAGTCATTGTTCTATCTCCTCTGCGA 343 30 76.7 0 ...............G.A.C.AAG.....A | ========== ====== ====== ====== ============================== ======================================== ================== 6 30 96.1 38 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : CGACG # Right flank : AATCAGGAGACGGCATTGCGATGCCCGTATTAGTCAATCACGTACTGAAATCGAAGAATGCCCGGGGTGGGCTCCGAACCCACGATCTCCGCATGTCCCAGGTGCGAGGCCGGCATGACCTCGCGGGGGGCGGAGGCTTCCAAGGCGTTCCGCACCGATTGTGAAACCCTATGAGTGCGGCGCTATGTCCAGCTAAGCCACCCGGGCTCAACTTCCCGTTGTGTGCTGGTTGTATTTAAGCTTCTCATCTCCGACGACCGCGGGACGGGTCACCACGGCACTCGATTCGAGTCATCACCCGCGGATTTATGTCCCAACACCGGGTGCACACACGCATGAGCCAACCGGAGATCGTCCAGTCCGTCCTCGGAGAGGAAGACGTGGTGACCCGCGTCCACCTCGGGGGCGAGGACGAACTGTTTGTAACTCCGACGCGGACGCTCGTCTATCGGGCCGAAGGCCTCCTCTCGGACGAGTCCGTCGACGAGTTCTCGCACGCT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 7629-7785 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANPG01000371.1 Haloferax sp. BAB-2207 Contig371, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================== ================== 7629 30 100.0 33 .............................. AGCCGGGCGCGGGAACACCCCGTGTTCCGAGTG 7692 30 100.0 34 .............................. AGAGATTCAGCACATCCTTGACGAAAACTTAGGC 7756 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================== ================== 3 30 100.0 34 GTTTCAGACGAACCCTTGTTGGGTTGAAGC # Left flank : CGTCGTCGGCACCTCCGTCGACCGCATCCGCGAGCGCCTCGTCGGCGACGTCCACACCTACGGCGGCCGCTCCACTATCGGCGACTGGTACCGGACGAACCGCGCGCTCCGCGAGCGCATCGACGACCTGCTCGACTCGGCGTGCGAGCGCCCGTACTTCGACGCCGACGAGATTCGCCGCCTCCAGCGCGAGGAGCGCACGGGCGAAGCCGAACACATGAGCGCCATCTCCGGCATCATCACCGGCGAGCTCTGGGTCCGCAAATACATCGACCGCGAAGGTCGCGGCGTCGAGGAAGGTCCCGTCGGTGCGGCGGAAGCCGAAGACGCGCCGCAACCGGCCGACTGAGTTACTCGAACCACTCGATGGACTGTCCAGTCGTGTGGAACTGCGGTTCGTTTCCGTCGACCCCCCGGGGAAGCGAGGACTACTGAGGGTCGACGGAAACGTTCTTTTGAATTCGGTTCGTACGCGACGTTACGCCCGTGATTTCGGGACG # Right flank : GACTA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //