Array 1 914173-909758 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGTH01000001.1 Peptoniphilus indolicus strain NCTC11088, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 914172 30 100.0 36 .............................. CCAATTTACTATAGTTATAAGCCTGTTTTTGTTTGT 914106 30 100.0 36 .............................. TACTCTTGGACAAACTCTATCATTTCGCCTATAAGG 914040 30 100.0 38 .............................. TTTAATAAATCCACCACCTTTCTTATTGATTCAATACT 913972 30 100.0 37 .............................. TTTAACATCAACTCATTTGCAAGAGATACTCCAAGCT 913905 30 100.0 36 .............................. GAGTATTTAAATGTTATGGTTTTTAGTGCTGGAGTA 913839 30 100.0 36 .............................. TACATTATTTGACTTTGAACACGCTAAAGATTTGGA 913773 30 100.0 36 .............................. AGGTCTATTGAGTACGAAAGGGCGGCTCAAGGTGGA 913707 30 100.0 37 .............................. TTAAAAGAATTTGTAGACAAGATTAATGTTCTAATTG 913640 30 100.0 36 .............................. CAATAAGCACATTTGCACAATCCAGCCAAAACATTT 913574 30 100.0 38 .............................. TATATAGTATAATTATAACATACATAATAAGTTATGGA 913506 30 100.0 38 .............................. ATAGCAAAACGCAAACCAAGTGCTAGCAAATTTGGAAC 913438 30 100.0 38 .............................. AGGGTTTGGTTGTAGTAACAAGTATAAAAACGGATTTA 913370 30 100.0 34 .............................. GTATTATAAGGCGGATCTGTCAATAATACATCAG 913306 30 100.0 37 .............................. TGTATAGTAGCAGATGACTTAACAGAACAACAAATAA 913239 30 100.0 38 .............................. ATAATGGTATATGATGAAGATGACGAAGATGATTTCTA 913171 30 100.0 35 .............................. ATCTTCTATATCTCCTGTACGATCAGTAATGTTTT 913106 30 100.0 36 .............................. AATAATTAAAATTGGGATTATGAAGTTCCATTGCGG 913040 30 100.0 36 .............................. TATAGCAATTAGCTCAAGATATTTATACATTTCTTG 912974 30 100.0 35 .............................. GATGGAAAGATGTATTACAACATAGCAGAAAGAGT 912909 30 100.0 36 .............................. ATTTAATAGAAGATACTAATTTCATACGGGGAGTAA 912843 30 100.0 36 .............................. CCAAAATTTTATCAGTTTTACAATCGTGCTTTTCTA 912777 30 100.0 37 .............................. GTATTTCTTGTATGTTATAATCATCAAGAGGCAATTC 912710 30 100.0 36 .............................. TAATATTATTAAACAAAAGATACCATATTTTTTGTA 912644 30 100.0 37 .............................. TTCATTAGAACTTGTGGGTGTGTCGCCATCGCACCAT 912577 30 100.0 37 .............................. TTTTAAATAGAATTTAAGGAGGTTTTTTATGAAGAAA 912510 30 100.0 36 .............................. GTAATTCTTGTTTATCCTTTAAACTTTTATTGTAAA 912444 30 100.0 36 .............................. AACGTATTGTGTGCGTTAGGTATACCTCTTGCTCTA 912378 30 100.0 34 .............................. ATATCTTTTATATACATTTCATATAGGGATTTAA 912314 30 100.0 37 .............................. GTAAGGTATTCTGATGGTTATGTATGCCCTAAGTGTC 912247 30 100.0 35 .............................. GAAACAAAACCTAACATCTTGTAGCAAGCGTAGAG 912182 30 100.0 36 .............................. ATACGAGAGAAAAAGGCAAACTATAGGCAACAAAGT 912116 30 100.0 36 .............................. AACAAAACCTAACATCTTGTAGCAAGCGTAGAGCAA 912050 30 100.0 35 .............................. TGACTTTAAATTAAAGAGTGTATCACGTGAGAAAA 911985 30 100.0 38 .............................. TTTTCATCAACTCTTGATTACTATCTTGCTTAGCATTA 911917 30 100.0 37 .............................. TAAATTTATCATCTGCATTAATAAAATAATTATACAT 911850 30 100.0 35 .............................. TTTTCTTTATAATCAAATGATAATACTTTTTCGTA 911785 30 100.0 37 .............................. TAAATTAAACTCCTTATTTAAATTCGTGGGTCGACTT 911718 30 100.0 38 .............................. AATGTTTCTTCACTTTCTTCAAAATCAGCATCATTGCA 911650 30 100.0 37 .............................. TTGTTTCAGGATAGTTCATTAATTTAGCAAATTCAGT 911583 30 100.0 35 .............................. ACAATTGTATCCAGCATTGTAGGAGATAACATCGA 911518 30 100.0 35 .............................. TTATCACCAAAAATATTTGTTGTTTTTTCATTAAA 911453 30 100.0 37 .............................. AATTTAAAATTTAACGACTATGTATTAGTCGAAACAA 911386 30 100.0 37 .............................. GTGTTCGTTTACTTTGTTTTTATTACTAAACTTGTGA 911319 30 100.0 36 .............................. TCTTCATCTACAGCTACAAAGTCTGTTTCAGACTCA 911253 30 100.0 34 .............................. CTAAGCTATCAATGAATTGTGCAACCTCTAACGC 911189 30 100.0 37 .............................. TTTACAGTAGTGAGTAAAGTTTGCACACACTGTACAA 911122 30 100.0 36 .............................. GTTACTTTTATTTCTTTCAAAAAGTTTTTTTATTTA 911056 30 100.0 36 .............................. ACCGTAAAAAGAGCCGCATTCTGTCTATTATTTCTA 910990 30 100.0 34 .............................. TTGTTTTAAAATTTTTTGTGGTAGATTTTTAGAC 910926 30 100.0 36 .............................. ATGTATATTACTACAAAATTTAGATGGCTATTAGAT 910860 30 100.0 37 .............................. CTTTTATTTCCTCAACATCTTTAGCTAACTTTTTATC 910793 30 100.0 38 .............................. GATGATTGTCATGACTCTATTGGAGTTATGATAGACAA 910725 30 100.0 37 .............................. ATTTTATCGGCTCCCATAGCAACTAATGCGCCAACTC 910658 30 100.0 35 .............................. TAACTCTGCAATTGTCAGCTGTCTTGCTACATAAA 910593 30 100.0 36 .............................. TGTGGTCCAGGGGTTAATTTGATTCTTTCAAGCTCA 910527 30 100.0 39 .............................. CTAAAACAAGGATTGCTGAATGTAATAGATACTTATGAG 910458 30 100.0 37 .............................. TTTTAGCTGGAATTGTAAAAACTTTTTCATCAGATGG 910391 30 100.0 36 .............................. GTTCTTGTCTTTCTTAGTATTTGACCTGCTTGTCCA 910325 30 100.0 39 .............................. CTGGGTGGCAAAGAGAGCACACAGTGGTAAATGGAAACT 910256 30 100.0 38 .............................. TTGAATATGCCAAACATCCTGATAGTCATTTTCGCCAT 910188 30 100.0 36 .............................. GAGATAGCTGCGAAAATAAAAGCTGTTTCGAGTGAA 910122 30 100.0 36 .............................. TTTGAATTCTTCCACTTATCCCGATCCTGTGTCCTT 910056 30 100.0 37 .............................. AAATTCAGACTTTTTAAACTCATCCATTTTTTTATTA 909989 30 100.0 36 .............................. TTATTTTTTTAATTAGAATACTTAGAGTTGTAGCAA 909923 30 100.0 38 .............................. AAAAACTTTTCAGCTAGAGTAGTTTCTAATGTTATTTT 909855 30 96.7 37 ........................A..... AAATTTTCAGATTGATTTATAACTACAATTGATTTAC 909788 30 93.3 0 .......................A..C... | C [909761] ========== ====== ====== ====== ============================== ======================================= ================== 67 30 99.9 36 GTATTAATAGAATCAAAATGAAATGTAAAT # Left flank : AAAAGAATATAAAGGATTTAAAATATGGTGGTAGTATGTATATGATTTTAGTTTATGACATTACATTAGATGAAGATGGAGCCAAAGTATCTAGGAATGTTTTTAAAATATGCAAAAAGTATCTCACACATATTCAAAAGTCTGTATTTGAAGGAGAGTTAAGTGAGTTACAATATGCTAAGTTACAGAGAGAAATTTCAAAATATGTAAGGAAAGATAGAGACTCTATAATAGTTTTTCACAGCAATAATTCAAAATGGTTAAAGAAAGATTTCTTAGGGCTTATAGACGATGCGACTTCTAACTTTATTTAGTATGTCGATGTGAAATTATGTTATAATAACGTTGCACCGACATTTAGATTGAAACGGCTTATTTGCTAGATTATAATTGCAGATTGAAATTATATTAGATATAAGTGAAATGATTTTTTTATAAATTAATTCATAGACAAAATATTGGGCTCAATCTAGCTTGGTATGAGGCCTGAAATTAGACCT # Right flank : AAAAATAAATAAATTATAAAACTTTTGTTTATACAAAAATAATTAAAGATAATTTCTTAGTTTATATATAAAATCATTATAAAATAGCATATAAAGTTGGCTGTAGCAAGTCGTATTAGTGGATAACTATTGCACAAATTTAAACAAAGGTATAACATTGAATTGTAAGACACATTAAGCTTATAAATGCTTGTTGTGTTTTTAAATTTAAAGGAGGAATATTATGGAAGATAACAAAGATAAGTTTAAACATATTAGAGATATTAAAGAAAATTATAGACGAATGGAAGAAGAATTTGTAACTCAACTCAATTATGAGATAAATAATCATCATGGAACTGCAGGAGGAAATAGAGAAGAGATATGGAAATCGTTTTTTAAAAGAATTATTCCAAAAAAATTTAATATTGCTAGATCGGTTTTTATAATTGATTCAAATGGAAATGTATCTAAGGAAGTTGATCTAGCTATTTATGATGAACAATACACCCCCTATATAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAATCAAAATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [90.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 1320002-1319675 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGTH01000001.1 Peptoniphilus indolicus strain NCTC11088, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ========================================================== ================== 1320001 23 100.0 48 ....................... ATGAAATCCTTGGTATTACCAAATTTTTCAATAATGAAAAAACAAAAA 1319930 23 100.0 58 ....................... TTTTCCTTAATAGAATATGAATGTTTAGAGTTAGAAGCTAAAACTGAAAAAACAAAAA 1319849 23 100.0 53 ....................... GTTAAATTTTCAGCTTTTATAAAGCCGATTTCTTCAATTCGAAAAAACAAAAA 1319773 23 100.0 53 ....................... TATTTTACCTGTATGTCCGCAAGCATACGTGTCTTCAAATGAAAAAACAAAAA 1319697 23 91.3 0 ................TA..... | ========== ====== ====== ====== ======================= ========================================================== ================== 5 23 98.3 53 AATCCCCGACAGGGGACGGAAAC # Left flank : AAGAATATAACCCAATAAGAATAAGGTAGGATGAATTATGCAGAAAGACTTTCTTATAAAAGCAAAAGAAGATATTTTCTATGAAGAAAAACACCTAATTTTGATAATTTATGATATAGTAGATAACAAAAGAAGGAATAAATTTTTTAAACTATTATCAGGATATATGATATCGGTTCAAAAATCTTGTTTCGAATCACATTTAACAGAAAGTGAATTCGAAAAATTAGCTTACAGAATCCCATTCTATATAGATAAAGAAGAAGATAATGTACGCTGTTACAAATTATCAGCTCATGGGAAAGTTTATAACTTTGGAAGTGAAAAGAATGATGCCATAGAAGATATAGTTATATTTTGACCGATGGCTTAAAATCAAGAGATAGGGCCTTAAATTAAAAAATTATTCAGATAAAATCTATAAAAACAACCCCTGTCCGCAAAGTCATTTTACAATCCAGCAAATTCAACATCTATAAAGGACAGGGAAAAAACAAAAA # Right flank : TATTATTAAGTTTTCATTTAAAGCCTATTTTATTCCATTTAGCAGAAGCTCTGAGTTTTACCTCAGTGCTTTTGTATGCGTTTGCTATTGTGTTTACCTATTTCGTCTGTTAAACTTATAGGTAAGAAGTTAAGGGAAAGGCTAAAAGCCTAACCCTTTGAAAATTTTGAATAGTCCTGCAAGTGTTGTAAGTAGGTTAATAATTGCCGTTATTAACTCTAAATACTCAGCCTTGTGGGGTTTTTCTTTTTCTTATCCAATTTAACCACCCATTTTAAGTCAAGCGGGCTATAGGGGAAAAATAAAATATGTATCTTACAAAAATGTAAGGTCAAAGGAGAAAATGTAAGTTTTTTATAAAGGTACATTTTCTCTTTTTTTATATAATGTATTTATGAGGTGATGATATGGCATTTATAGAAGTTTCAAATTTAAAAAAGATATATAGTTCAAAATTTAGTTTAAAGACAGTTGAGGCGTTGAAGTCAGTCAACTTTGAG # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.66, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGACAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //