Array 1 985541-985042 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063086.1 Helicobacter cinaedi strain 2017D-0197 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ============================ ================== 985540 38 100.0 28 ...................................... CATTTACCATACAATTAAAAGTCTTATT 985474 38 94.7 28 T....................................G CAAGAGTTTCTTTTAAATAAAGATAGTA 985408 38 100.0 28 ...................................... AATTACTCGGAGTCCTCGCTTCACGCGG 985342 38 100.0 28 ...................................... ACTGCAAACTTGGAATCTACTATGCTTT 985276 38 100.0 28 ...................................... AATTACTCGGAGTCCTCGCTTCACGCGG 985210 38 100.0 28 ...................................... AAATGTGAAGTGTGTGGGAATAATATTA 985144 38 100.0 28 ...................................... GCTCCTCTTTTGAAGCATTCTCATTTTT 985078 36 86.8 0 .....................A--.........T.T.. | T [985048] ========== ====== ====== ====== ====================================== ============================ ================== 8 38 97.7 28 AGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAACA # Left flank : CATCTATACAAGCCCATACAATACAAAGCCATTATGCTAATTTTGCCTAGCCACCTAGCTTAAGATCTCTTAAAACCTTTAGACTGCCCCTCTTAACACATCTCATCTTTTAAAGCTTACGATTTTAGAATCTTGCCATACTTTTAAAACCTTGTCATACTGAGACTTTTGCCGAAGTATCTATATTCTAAAATTCTTATAAAACCCTCATATACGAATCCACCAAACCCAAAAACTCTCATTTATAATTTTTATTAGATATTATAAAAATGTGTAAAAGAATAAAGCCTAAAATAAGATTCTCTATAAAATACCAAGATGATTTACTCTATTTTAACACCTTTTACCTATCATTAAGGCATTAAAAGCCCTTGTGGCATTCCCTAGTTAGGCGTTTTTTGACATTTTGGTATGACTTGTTTGGATAGAGTTGCGTGTTTTAGGATATTTCAAGCTTTGAAAACGCTCAAAGCACACACTAGAGCCGACTTGGAAAAGTC # Right flank : CTCTAATGCTTTTACTTGTTGTATCAAAGTTTGTCTATCTTATGTCATTACTAGGGCTTTGCCAAAGTATATAATCCACACAAACAAAAATCCTGTTATTTTTCTACAAAGTCTTGTAAGATTCTTAAATTTAGCTAGAATGCTGTGTTAAAAAATGACATATTTAAAAGGAAATAGATGAATAACTTCAGTAAGATTGGCTTTGTTTTGGCGACTTTGGGTAGCTCCATAGGCTTGGGACATATTTGGCGGTTTCCCTATATGGCGGGGGAAAATGGCGGTGGAGCGTTTGTTATCTTTTATCTTATCTTAGCCATTCTCATTGGTGCGTCTATGCTGATGGCGGAAATGCTCCTTGGCAATAAGGCCAGAAGCAATCCTTTGGATAATTTTACTATCCTTAATAATCTTAATAAACTTCCACCAAACACGCCCACACAAGAGCATAACACCACAGATTCTAAATCTAGCTCATCACTTATGTGGCTTGGCTTTTCTAC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.63%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 1525086-1526848 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063086.1 Helicobacter cinaedi strain 2017D-0197 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================= ================== 1525086 36 100.0 30 .................................... GAAAATTTTTCTTATAAAGAGTATATTTCC 1525152 36 100.0 30 .................................... TATGCTGGTGGACTTGATACAACTACGTCT 1525218 36 100.0 30 .................................... CCTCTGCTGTTATAGACGCCGGTAACATTC 1525284 36 100.0 30 .................................... AACTTTGAGCTTGTCCCTGAGTCAAAAGTT 1525350 36 100.0 30 .................................... ATAAGTGTAGCCACATCTTATTCTTTCTAT 1525416 36 100.0 31 .................................... CCGTTGCTAGAGCTTCCACGCAGCGTGGCAG 1525483 36 100.0 30 .................................... TTCAAAAAATGAAAGAGGTTGCCACCTCTT 1525549 36 100.0 30 .................................... GAGCAAAAGACGCTAACAAGTCTAGCGAGG 1525615 36 100.0 31 .................................... CCGTTGCTAGAGCTTCCACGCAGCGTGGCAG 1525682 36 100.0 30 .................................... TTCAAAAAATGAAAGAGGTTGCCACCTCTT 1525748 36 100.0 30 .................................... GAGCAAAAGACGCTAACAAGTCTAGCGAGG 1525814 36 100.0 33 .................................... AAAGACTTCTAGCAGATTCTAATTTTGAGATAA 1525883 36 100.0 31 .................................... CCAAAAGATTTAAAACACGCGACCCGATAAG 1525950 36 100.0 30 .................................... TTGATGTCGGTGCTTCCTTATAATATGTAT 1526016 36 100.0 30 .................................... TGCTACTGCTTTGCAAAGAATGCAAGAAGC 1526082 36 100.0 30 .................................... CATTCGGAAACCGACACGTCGACTGCCGCG 1526148 36 100.0 30 .................................... CAGCTCGGTTTTAATGCGATTGCTCCAATA 1526214 36 100.0 30 .................................... CTAAAAATAGTGAACAGCAGAGACAGTATT 1526280 36 100.0 30 .................................... ATCTCTAAAATCTCTAAAACAATCGCAAGG 1526346 36 100.0 31 .................................... AAAAGGATAGAGTTTCTCTACAAGGATATGG 1526413 36 100.0 31 .................................... AAAAGGATAGAGTTTCTCTACAAGGATATGG 1526480 36 100.0 31 .................................... GCGGTGATAATTTTGGCGGTTCTCAAGCTTC 1526547 36 100.0 30 .................................... TTGGAGCTATCATCATACAAAGTTTGTTGA 1526613 36 100.0 30 .................................... CCAGCGCCATCAATCATAAATATCGTATTC 1526679 36 100.0 31 .................................... ACATTTGAATAATCTGCGTTCGTGTGTGTTA 1526746 36 100.0 31 .................................... CCGATATTTCTTTCAGTTCTGTCACATTCCA 1526813 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ================================= ================== 27 36 99.9 30 ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Left flank : CTTTTTTATGATGCAATTTAGCGTGTATATGAAAATATGCAAAGGGTTAAGCTCGGCAAAAAGCTCTCTAAATGCTGTAAAAAAGGTGCTTCCAACTTATGGTAATGTCCGCGCACTTATCATCACAGAAAGACAATTCGACAATATAGAAATATTATTAGGAAACCCATCATTTAATGAAAATGTTAATGAAGATAAAAATCTTGTGCTATTTGACTTTGACGAAAATGCGGGTGATTACCGCTATGGTATGGAGTATCAAAAACAAGAAGAATTGAATACAACTACTACACAACCAAAACAAAAAATCAAAAATAGGCAACCAAGCCTATTTGAATTCTAGGGTTTTGATAGGGATATGATTTACCCTGCGGAAGACCCCTTACTCCCTTATTTTAGTCCCTTCTTAAACTTCTATGTCGCGAATTATAAAGGATTTCAGGTAATTTCCAGCTTAAAATCCTTTGAAATCCCTATCTATAGGCACCAACAGAGAGCCG # Right flank : TTAGTGAGATTGAAGCCAATTGGATACGAATAATGGCAGAGCTAGAGACACAAGATGGCGATAGTAACACTTCACAGAGTGTGGTTGAGTCAAAGCAGAATTTTAATGCCCTAAATGACTTTAAAAGTTATGCTGATGAAAATCAAAAGCAAACAACAAATGGCTTTTCATTTGGCTCTGCGTTTTCTAAATTGAAAGAAAAGGGCATTGAAGCAAAAGAAGCCATTGAAAAAAAGCAGAATGCTAGATAAGGTTAAAGAAAAAACAAGTGAGCTGACAAACAAAGGACTTGAAAAAGGCAAAGGATTGATTGAATCTCAAAAACAAAAAGGGGCTAACAATGAGCGAGATTAAGAATAAAACATTTGAAGATAAGTGCAATTTGTTGGGCAATACACTGCTAAAAGTTAATGATATTTTATCTAGTGATTTTAGGAGAGAGCTAGAATCTTTGAGTCCTTCTTCTATGAGTATGGATAAAAAACTTTTATTGTTTTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //