Array 1 154635-154842 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGH01000024.1 Gilliamella apis strain P83G Gilliamella_apicola_P83G_contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 154635 28 100.0 32 ............................ GACCAGGATAGGCACCATGTCGGCCTTAATAC 154695 28 100.0 32 ............................ AGTGCTCATACTAAAGGGTTAGCCGTTGATTT 154755 28 100.0 32 ............................ AAACAAGAAATTAACAACAATCCAAATTTTAA 154815 28 89.3 0 ...C...A....G............... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTTTACTGCCGTATAGGTAGTTTAGAAA # Left flank : ATTAGCTTGCTATAAACATAAGAGTTTATTTTGGCAAATAAGTATGGTGTATTTAATTTAGCGACATTAGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTAGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACAGTATAGAAACAACCACAAAACAGCAAACGTCTGAAACTCAAACAACCAAAAAAATTTGAGGAACGGGGTTTTTGAAAATTAAATTCCTACTTATTGTTAACCCTTTTTTTTAACTTAAAATAAAGTATTTAAAAATCAATATGTTGAAAAATAGCTCAAAAAAAGGGTTTTTATTGGCAAAAATAGACTTTGCCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : ATACACTGCTTATTGAGTAGGTTAAAATGGTGATTTTTTTAAGAGGGGAATAAAGGGTCTATTATTTCTAATAAACAACAAATAACCGATGCTGTTTTTGAGTTATCAGTGTTCTTCTTTACAAAAGTTAACAATAAAACCATCAAAAAAAGTTGCATGGTTTTTTCCAATCACTATACTTTTATAGCATATTTATACGAATGGATAAATTTTATGCCGTTAGGCTTAAAATTTAAAATAAATCATAAAATTGGATTGACAAGGATATCTGATATGGATTATAATTTTCAACACACAACACACAACACACAACCTGCCCAACCTATAATTTCACCTTTCTAAAGTTAAGCTCAAATCGTTTATTATTTCACTGTTGTTTATTATTTCGGCAATTTCGGCAATTTCGGCAATTTCAGCATAATTTTTCAAAATTTCTTGGTTTCGCCTGTTTATCTCGGCCGATGGTTTTGGTATTAACCATGGTTGTTTTACAGTCTATC # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTATAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: F [matched GTTTACTACCGTATAGGTAGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 298754-298901 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGH01000024.1 Gilliamella apis strain P83G Gilliamella_apicola_P83G_contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 298754 28 100.0 32 ............................ TACACGGTAGTGAACATCTTTTAATTGATTTT 298814 28 100.0 32 ............................ TTTGGAAGAAGCTCTCTACATTCTCCCGTTTC 298874 28 96.4 0 .....................A...... | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : ATCAACTAGTTCCAATAATAAAAATTTATTTTGGCAAATAAGTTTGGTGTATTTAATTTAGCGACTTTCGCAACGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGCTGTGTTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCGCAAAACAACAAACGTCCGAAACTAAAACAACCAAAAAAATTTGAGGAACGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAGTGTTTAAAAATCAATATGTTGAAAAATGGCTCAAAAAAAGGGTTTTTATTGGCAAAAATAGACTTTGCCTTTTTGCCAACTACATTTATAGTATATCCGGCACTA # Right flank : ATATATAAGTGGCGGCATGGGTAACATCAAGAAGTACACTGCTTATGGAGTGGGTTAAAAATGGTGATTTTTTAAGAGAGGGATAAAGGGTATATTATTTCTAATAAACAGCAAATAACCGATGCTCTTTTCGAGCTATTAGTGTTCTTCTTTACAAATGTTAACAATTAAACAGTTAAAATAAGTTGCATCGAGTTTTTTCAATTACTATAATTTTTCCACTATATTTATATAAATGGATAGATTTTATACTTTTTAGTATAAAATTGTAAATAAATCATTAATTTAATTGACAGGAATGTCGGATATGTGTTATAATTTACAACACCAAACACCAAACACCAAACCTGCCCAACCCATAATTTAACCTTTCTAAAGTTAAGCTCGCATCGTTCATTATTTAACCGCAGTTTATTTTTTCAACAAATTCGGCAAAATTATTCAAAATTTCTTAATTTAGCCTTTTTATTTCGGCCGATGGTTTTGGTATTAACCTTGGT # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1644-1851 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGH01000018.1 Gilliamella apis strain P83G Gilliamella_apicola_P83G_contig25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1644 28 100.0 32 ............................ CGACATTATTGAAAATCATCTAGCCACAATAA 1704 28 100.0 32 ............................ CGTCAAAACGTGGGCGGTTGGCACGCATGGGG 1764 28 100.0 32 ............................ TGATAAGAAGAAAACTAAGAAAACCAAGAAAA 1824 28 78.6 0 .................CTTT....TT. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 94.7 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : GAAAAAATAGTGTTAGGACGTTAAAGAATAATTGCCTCACAAAGGCAATAGTGCTGACGAAGTAGGCGATAAAAAGCGATTTTGTGGTGCGACATTCGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGAGCGTTAAAAGCGAACGAAGGCGGAAGGCAGTCACGCAGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCGCCGTATAGAACTAGCCACCAAACAACAAAACGTCCGAAACTCAAACAACCAAAAAAAAATTGAGGAACGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACCTTAAAATAAAATATTTAAAAATCAATATTTTGAAAAATGGCTCAAAAAAAGGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTGCCAACAACATTTATAGTATATCGGGTTCTA # Right flank : AGTAATTAAAATGGATTTTTAGTATTTAAAACTCGCTATTCTCAAATTTATCTATGAAATAATTAAAACGCTTATATAAGCGTTTTAACTCTGATTAATATCATTATATCTACTATAAACTATTAGAACATTAATAGTTGTACAATTAAATTGCAGTCATGTAGACCTGATTATTCAGTAAGTTTTTAGGATCAAACTGTTGTTTAATTGCACGCATTAATTGGCGATTTGCTTCAGGAATGGCAGCATTGTAATAACTTACTTTCGCCGTTCCGATGCCATGTTCTGCTGAAGGCAATCCTCCTAATTCAAGACATTTTTGATAAAGCGCTTGGTGAACATTTTGCAGATCAGATTGCCATTGTTTGTCATCACGATTATCACGCAAAATGCATAGATGAATGTTACCATCACCAGCATGACCAAAGGCTAACATGCGCATTTGAGTTTGTGCTTCTAGCTGTTTGGTGAAATTGATAAAATCGCTAATGCGATTTATT # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.00%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 57178-57385 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGH01000018.1 Gilliamella apis strain P83G Gilliamella_apicola_P83G_contig25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 57178 28 100.0 32 ............................ ATATAAAGAATAAATAATTTCTTCTTTATAAA 57238 28 100.0 32 ............................ TCAAAAACATTTAAAACATTTAAATGTTTCAA 57298 28 96.4 32 ............A............... TCATTATCTGGGTTGGGTCGAACAATAATTGC 57358 28 92.9 0 ............A.......T....... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTTCACTGCCGTGTAGGTAGCTTAGAAA # Left flank : TAATAAAAATTTATTTTGGCAAATAAGTTTGGTGTATTTAATTTAGCGACATTCGCAATGTGCTGACAACTGAGAGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAAAGCGAACGAAGGCGGAAGGTAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCGCCGTATAGAATTAGCCACCAAACAACAAACGTCCGAAACTCAAAGAACTAAAAAATAAAGAACTAAAAAATTTTGAGGAACGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTGACTTAAAATAAAAATGTTAAAAATCAATATATTAAAAAATCACTTAGAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGTCTTTTTGCCAACTGCATTTATAGTATATTCGATTCTA # Right flank : ATAATATTGTATAAATTAAAAATCCAGTAGCTCAGGGTTAATACCTAGTGCGCTAGCTATTTTAATACGTGTTGCTTTCCTTAATTTTTGACTTTTTTCATATTGAGAATATGCAGATTGACTGATACCGATTTTATTGGCAACTTCAACTTGAGATAATTTTAGATATTCTCGCCATGCTTGAACTGGTGAATAATTATTATCAAAAACCAGATTAACAACTTCGTTGGGCACACCAGTATCAGTATTAATTTGTTTAGTATTCGCTAATTCTAAATATTGTGTATAAGGCATAACCACAAACTGTGGTTGCCCTTGTTCATTATTAATAAACTGTATGTTATTAGTAAGTGCGTTCATCTCGTTTTTTCACCTCTTCGATAGAAACAATATGAATAATGCCATCAAAATTAAAAAACACTCGATAATTTCCAACTCTTAATCTGTACTGATATTTGTAGTTAGTCAGAGATTTTACATTAATGCAATTAGGCATGTTT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.60,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 68460-68607 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGH01000018.1 Gilliamella apis strain P83G Gilliamella_apicola_P83G_contig25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 68460 28 100.0 32 ............................ TTGGTGTTCAATATTGCTAAATGTTGCTTTAT 68520 28 100.0 32 ............................ CGGACAAGGTAACTATCAATGCGAATTAGTGG 68580 28 96.4 0 .....................A...... | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : TATTTCTTAGTTCTTAGGTATAGAAGCTGAGGATAAAAAAAATACCGTTAGGGTGTTAAAAAACGATTTTGTGGCGCGACATTGGCAACGTGCTGACAACTGAGAGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGAGCGTTAAAAGCGAACGAAGGCGGAAGGTAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATGGTAAAGAGGGTTGGCGGCAACCCTCTTAACTCGGACGTAATCGCCGTATAGAATTAGCCGCAAAACAACAAAACGTCCGAAACGAAAAGAACTAAAAAATAAAGAACTAAAAAATTTTGAGGAACGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAGTATTTAAAAATCAATATGTTGAAAAATGGCTCAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGCCTTTTTACCAACTGCATTTATAGTATATTGGATTCTA # Right flank : ATATATAAATGGATGTATAATCAAGAAATATACTGCTTATTGAGTAGGTTAAAAAATAGAATTTTAAAAGCGATTGATGCAATCTCTTTAATATTTATATCCTATGTTATACCCAAAAGTTGAAAAATACATTTTTAAGAATTAAAACGATATTTTAATGATATAACTTCATAATAATATTTACAAAATTTAACAATTAAACTATTAAATGCAGTTGCGTCGATTTTTTTCAGACACTATACTTTACAGATAATTTTAATCGCAATATTTGGTGGTGATTTAGTCGGTTAAAATGAAATAAAGTAAAATAAAACATGAGATTACTTGACAAAGGATGTTAAAATGCATTATAATTTACAACACCCAACACCCAACACCCAACACCCAACCTGCCCAACTTATAATTTAAATTCATCAAAGTTAAGCTCTCAATATTCATTTTTTGCTATAAGCGAGATCCCACGAAATTTTGCGCGATTCTTGCTTCAATCATTTTTGTC # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 78637-78901 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGH01000004.1 Gilliamella apis strain P83G Gilliamella_apicola_P83G_contig12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 78637 28 100.0 32 ............................ AACAACAAAATCTCGGCCGATAGTATTACACG 78697 28 100.0 32 ............................ TGACGTACGCGTTTTAGTAACTAAATATAGTA 78757 28 100.0 32 ............................ TGCAACAAGAATTGTCAAAAATGAAATACCCA 78817 28 100.0 32 ............................ AAAACCGAATAAAACCGATTTCGACCGCCATT 78877 25 85.7 0 ...................---..A... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.1 33 CTTCTAGGCTGCATAAGCCGTTTAGAAA # Left flank : CCGAAAAACGTTTAACCGCACAAGGTAAATGGTCAGCCGAAGTAAAAAGCAAAATGGTTGAAAAATGGGGCAGCGTTCATTTGAACTATCCACACCTTCATTTTGCTAGCAAAAGCACAGGGCAACATTTTATTATGTGGCTGAAACAACAAAAATGTGCAACGGCTGTTAAAGGTACATTTAATAGTTACGGACTCAGCAAAACTGCTACTGTTCCTGATTTTTAACTAAATAATAAGGGCATTATTATAATGCCCTTAGCTACCAATATCTAACCATATTAACAGCATAAATTTTGAGGAGAGTACTTTTTGAAACTAAAAAATTTGAGGAAAGGGGGTTTTTGAAACCTAAATACCATGCAGTGTTAACCCTTTTTTTAACTAAAAATAAACTCTTTAAAAATCAATTTATTGAAAAGCTACCGAAAAAAAGGGTTTTTGCAACGTAAAATAGACTTTGCCTTTTGTACAACAATGTTTATAGTATTTGGGGTTCTA # Right flank : ATTTTGAGGAACGGGGTTTTTTGAGTTTAAAATCCTTAATAACTGAAATGATCAGAATAGGTAAAAATATCTAAAACTAGGTAGGCAAGAATTATGAAATAAGGTTTTTGCGGATTGATGTTGTTGAGATTAAACTTTACAAAAGTTAACAATTTAGATTTTAAAAGAAGTTGCATAGATTATTTTCAATCACTATACTTTTAGATGATTTTTAGCGCAATAATAGGCTATTATTTAGCCAGAATAATTTAAAAAAACCAAATAAAACATGGAATTACTTGACAAGGTTGTTGTTATGAACTATAATGTTAAACACCAAACACCAAACACCAAACCTGCCCAACTTATAATTTAAAATCATCTCGTTATTACAATCAACGTTTAGTCTCTTCTAGTAGTTTATTTTTTCCTCGATTTTTAAGGTTATTTTTATTCTCGCCGCTTTTTAGCGTTTTCGCCGTTACTTTAGTTTTATTATTTTCATCAAGTAGTTATGCATT # Questionable array : NO Score: 2.91 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTAGGCTGCATAAGCCGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 78326-76098 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGH01000005.1 Gilliamella apis strain P83G Gilliamella_apicola_P83G_contig13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 78325 29 100.0 32 ............................. GGGGCTTTAAGCCTATTGGTCGTGAGATGATA 78264 29 100.0 32 ............................. CAATCCAGTCTTGCTGGACATCGATAGCAAGG 78203 29 100.0 32 ............................. TGAATTACATCACCTTTTAGATCCATGTCGAT 78142 29 100.0 32 ............................. AGCATCTCCGGTGTAGTATTTCGGTTCTGATT 78081 29 100.0 33 ............................. GCAACCAACGTTTAACACCATCTGTACTCACCC 78019 29 100.0 32 ............................. CAACACATGGTGATCCTAAATCTGCTGATGTA 77958 29 100.0 32 ............................. CGCATCTTTCCACTTAACAAGATTTTGCTCAT 77897 29 100.0 32 ............................. TATTTCGTATTCTTCTTTTCTATCTGACCCTG 77836 29 100.0 32 ............................. CATGTAACAAATCTGCAATACAGCTTAAAAAC 77775 29 100.0 32 ............................. ATGAATCATTGAGAATGAATGGCACGGTATGC 77714 29 100.0 32 ............................. TGCGAGATATTCATTATAACGTCAACATTAAA 77653 29 100.0 32 ............................. TTTTCAGTCGCTGGGCCTAAATTAGCATATCG 77592 29 100.0 32 ............................. GTTATCAAACAATTTGCCCCGGATTTAGAAAT 77531 29 100.0 32 ............................. TAATTTAGGCACTCCATGGAATAACCGCCCAT 77470 29 100.0 32 ............................. GGCACATATTTACGAAATGATTTTATTTTTAA 77409 29 100.0 32 ............................. AGCGTAAGTCAAAAATTAAAGAAGCTGAAGCT 77348 29 100.0 32 ............................. CATTTAATTGATTATCATCCCATTCTTTTTTT 77287 29 100.0 32 ............................. TATTGTGCATGGTTGTAAATACCTCGCACACT 77226 29 100.0 32 ............................. CACATATTTTTGATTAATTTCTTGAGAAACTA 77165 29 100.0 32 ............................. TTTACGTGAAACGATCCAGGATGGTACTCAAT 77104 29 100.0 32 ............................. GTATTCAATCCGCCCTAATGAATATAACAGGC 77043 29 96.6 33 ............................A GAATTATTTGATAATAACTGGCATTCTATTGAT 76981 29 100.0 32 ............................. TATCCAGTTAATGCAATTATTAAGTATAACGG 76920 29 100.0 32 ............................. AATTGGAATTCTAGCGATACAGCCCACGAAAA 76859 29 100.0 32 ............................. GGAATTCGAATTCCCGCTGAAAATAATAATAG 76798 29 100.0 32 ............................. TATTCCATCTCATATAGATTTTATGTTACATC 76737 29 100.0 32 ............................. AGGCGATTGTTGATAACGGCGCAGTATTTGAA 76676 29 100.0 32 ............................. CCATTCCAATTAACCCTATTTTAGTATTACCA 76615 29 100.0 32 ............................. TAAGAAGTTTTAGCTGGTACTTGTCCATCCAT 76554 29 100.0 33 ............................. CCCCAGTAATTAGCTGAGGCTATTTCGTATAAA 76492 29 96.6 32 ............................A AGTCTTCCATTTCTTCGGTAATGATTTTTTTC 76431 29 100.0 32 ............................. CGAAAGGAGGAGATTAATGAAGCTAACAAGAT 76370 29 100.0 32 ............................. GTGAACTTAAAAAACTTGCGCAATGGTATTTT 76309 29 100.0 32 ............................. GCCCTTATCTTGTTCTGCGGCAAAACGATTAA 76248 29 100.0 32 ............................. ATATAAAATCAATGATCTGAACTGATTTACCA 76187 29 100.0 32 ............................. ATTGCTATTAGATGCTGCGGGCATTAGACCCC 76126 29 89.7 0 ......................G...A.T | ========== ====== ====== ====== ============================= ================================= ================== 37 29 99.5 32 GAGTTCCCTGTAGGTACAGGGATATACCG # Left flank : CTTATCGAAGAAGTTTTATCTGCTGGTGGAATTGAACCGCCACCAGCTCCAGATGATGCCCAACCACCAGCTATCCCAGAACCTCAATCTCTTGCTGACAGTGGCTTTAGGAGTCGCTAAAAATGAGTATGTGTGTTGTAGTAACTGAAAATGTCCCGCCTAGGTTACGAGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGGGTTTATATCGGTGATATATCAAGACCAATAAGAGAAATGCTATGGCAACAAATCACTAAACTTGCTGAGGAAGGCAATGTTGTCCTTGCTTGGGCGACTAATACTGAGTCAGGATTTGACTTTCAAACTTATGGTGCAAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGGTTGGTCTCTTTTTTACCTATTGAAAATCAATAGGTTAATGTTCTTTAAAAATTAGAAAAATTTGGTAGATTTTAACTAACTAAAAAATATTATATAAAACAAATATCTATATTTAGA # Right flank : TTACTAGCTAATAAAATTACATCCAAATGGTTTTGAATTACCTACCTTTATGTGAGTAGATGGTATACACTCCTCAATATTTTTTACAAGGCTCTAATGATAGCTATTTATAAAAATAAAAGTTAATAATCATATGTATAGATAATATGAAATAGAGGTTTTTTAGTTAAACTAAAATAATTATTAAAAATAGCGTACAATACTCAACATTAATCGTAACTTCATTATCAATCATTTAGGAATTTTGTATGACAGGTAAATTTATTGTCATCGAAGGTTTAGAAGGTGCTGGCAAAACAACAGCCATCAATACTGTTGCACGTATTTTAAAACAACATCATATTTCTGATTTACAATTTACCCGTGAACCTGGCGGTACACCAATTGCAGAAGCATTACGAAATATTATTAAAAATGGTTTAGATAATGAGCCGCTAACTGATAAAGCGGAATTGCTAATGCTTTATGCTGCTCGTATTCAATTGGTTGATAATGTAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCTGTAGGTACAGGGATATACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 96355-96747 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGH01000005.1 Gilliamella apis strain P83G Gilliamella_apicola_P83G_contig13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96355 29 96.6 30 ............................A TTTTTAATTCAGTCGAACATGCGAAAAATC 96414 29 100.0 32 ............................. AGGATGAATACCTTTTTCTCTTCCTTTCTTCA 96475 29 100.0 32 ............................. GTCTATCGTTTTTTTATGATACGTTGTTTTAT 96536 29 100.0 32 ............................. TTATTACTTGATCATTCATACTAAACCCTCAC 96597 29 100.0 32 ............................. ATTTGAATCATCTATTAACTGGGTTAAGATTA 96658 29 100.0 32 ............................. AACTCTTTAAACGTGGAATGAAACATATACAT 96719 29 86.2 0 ............C.T.........C...T | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.5 32 GTGTTCCCTATATACATAGGGATAAACCG # Left flank : GGACAAAGCTCACAAGCTAAAAGTATCATATTAAATTTTAATAAATGCTATAGCCGTGAACAATTCAATGGTGAATGGGATAAGGAAATTGAAGTTTCAACCCGTTTATCAAAAGATAATATTGATCTTTATTTAGCATATCAACAAGATGGAAAAGTTATTCCTTACTGTAGTAGTAACGAATACGCATGGGAACAAAGCCATATTACAATTAGTGCATCTAAATGGGCTAGAGTTAAAAAAGCCGTCCCACAACTTGACGAACAGCATCTAGAAAAATTGAGACAACAAATACATAGACCAAATGCCATTATTGTGTTAATTGAGACAGAAAAAGAACCTTCTTTTTATTCCAAGGAATTAGGCTTTTATCTAAATTAATTTAAAGTTAAATATTAATAATTTTAACTTGCAATAAGTTGAGTGAATTTCATACAGAAAAAATCGGTAAAAAATTACTCCCTTATATTTCAATTATAAAACAAATGGTTATAATTAGG # Right flank : TTATTACTGGCTAATTCGTTAAAACTGCCTGGCTAGATTTGGGTGAGGATGGAATACTTTGATCATCTGCAAAAATCAGTAGTTCGCCGTCGCTATATCTAACGTTTTATGATTGATGGTGAGGTTAAGCCAATGTTAGCTGTATTAGAGTATTTAAATGAACATAAAATAAAACCCAACCGCCGACACGTTGGGTAGGCTGCGCGTGGGATTGGAGGTCCTGTCGGAGACTGCCCGCGAATACCTTTTAAATAGTATAGGTAAAAAAATGACTGGCGTAAATATTGAATTCAATGTACAAGACGCACTAATCAACATAGAATTTGCTTTGCTCGATACACATGGTTTATTCAATCATATAAGTGGAACATTACTTGATATTTATGAAGCACGCTTTAATGCACAGGAATCACCAGATGGTATAACACCATGGCAAGCATTATCACCATGGTATCAAGAAAGTAAGCCAAAACAAAAAAATAAAATCTTAACGCTCGATG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATATACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3983-4310 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGH01000006.1 Gilliamella apis strain P83G Gilliamella_apicola_P83G_contig14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3983 28 96.4 32 .......A.................... TGATAAAAATGTTGCTGAAGATTATGGCGATG 4043 28 100.0 32 ............................ ATCGCGGATTGCACTCAGGATTGGTCAAAATA 4103 28 96.4 32 ....................C....... AATTAGTCAGGTTGTAGACGTAATTCTACAGC 4163 28 96.4 32 .......A.................... ATGAGTATCGATAACCAACTGTTACTTTTTTC 4223 28 100.0 32 ............................ TGCAAAAGTTCTTCGTGAAGCAACACAATTAT 4283 28 96.4 0 .....................A...... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.6 32 GTTCACTGCCGTGTAGGTAGTTTAGAAA # Left flank : ATTAGCTTGCTATAAACATAAGAGTTTATTTTGGCAAATAAGTTTGGTGTATTTAATTTAGCGACATCCGCAACGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGCTGTGTTTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGACGGAAGGCAGTCACATTATGACCACTTGCGTGGTCGTCGCGGGAAATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCGCCGTATAAAAATAACCACAAAACAACAAACGTCCGAAACTCAAACAACCAAAAAATTTGAGGAACGGGGTTTTTAAAACTTAAATTCCTACTTATTACTAACCCTTTTTTTTAACTTAAAATAAAATAATTAAAAATCAATATATTAAAAAAACACTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTTTCTTTTTGCCAACTGCATTTATAGTATATCGGATTCTA # Right flank : ATATATAAGTGGCGGTATAGGTAATATCAAGTAGTACACCGCTTATTGAGTAGGTTAAAAATGGTGATTTTTTTAAGAGGGGGATAAAGGGTCTATTATTTCTAATAAACAGCAAATAACTGATGCTGTTTTCGAGTTATCAGTGTTCTTCTTTACAAAAGTTAACAATTAAACCATCAAAAAAAGTTGCATGGTTTTTTGCAATCACTATACTTTTATAGCATATTTATACGAATGGATAAATTTTATGCCATTAGGCTTAAAATTTTAAATAAATCATAAAATTGGATTGACAAGGATATCTGATATGGATTATAATTTTCAACACACAACACACAACACACAACCTGCCCAACCTATAATTTCACCTTTCTAAAGTTAAGCTCACACCGTTTATTATTTCACTGTTGTTTATTATTTCAGCAATTTCCGAAATTCCCGAAATTTCAGCAAAATTTTTCAAAATTTCTTAGTTTAGCCTGTTTATCTCGGCCGAGGGT # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 546-398 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGH01000008.1 Gilliamella apis strain P83G Gilliamella_apicola_P83G_contig16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 545 28 96.4 32 ....................C....... TCTCCATTTTTTTGTTTAACTTTTTGAGTGTC 485 28 100.0 32 ............................ GTTACCGGATAAAGCAGTTATCGATGCATTAA 425 28 96.4 0 .....................A...... | ========== ====== ====== ====== ============================ ================================ ================== 3 28 97.6 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : TTAGCTCGCTATAAACATAAGAGTTTATTTTGGCAAATAAGTTTGGTGTATTTAATTTAGCGACATTCGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACATGGATGTTTGCCAAGGCTGTGTTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGACCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCACCAAACAACAAAACGTCCGAAACTCAAACAACCAAAAAATTTTGAGGAACGGGGTTTTTAAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATGATTAAAAATCAATATATTAAAAAATTACTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGCCTTTTTACCAACTGCATTTATAGTATATTGGATTCTA # Right flank : ATATATAAGTGGCGGTATAATCAAGAAATACACTGCTTATTGAGTAGGTTAAAAATGGTGATTTTTTAAGAGGGTATAAAAGGTCTATTATTTCTAATAAACAACAAATAACCGATGCTGTTTTCGGGCTAGCAGTATTCTTCTTTACAAAAGTTAACAATTAAACCATCAAAAAAAGTTGCATGGTTTTTTGCAATCACTATACTTTTATAGCATATTTATACGAATGGATAAATTTTATGCCATTAGGCTTAAAATTTTAAATAAATCATAAAATTGGATTGACAAGGATATCTGATATGGATTATAATTTTCAACACACAACACACAACACACAACCTGCCCAACCTATAAATTCACCTTTCTAAAGTTAAGCTCACACCGTTTATTATTTCACC # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 27915-28182 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGH01000009.1 Gilliamella apis strain P83G Gilliamella_apicola_P83G_contig17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 27915 28 100.0 32 ............................ TATTTATGAGGTAGGTGCATTTGTTGTATTCA 27975 28 100.0 32 ............................ TATTTATGAGGTAGGTGCATTTGTTGTATTCA 28035 28 100.0 32 ............................ AAAACCGAAATATAGGGAAACAGACGGACTAT 28095 28 100.0 32 ............................ TCGTTTATAACAAAATAGAACGCCTGCTGATG 28155 28 89.3 0 ......................A.A..T | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.9 32 GTTCACTGCCGTGTAGGTAGTTTAGAAA # Left flank : TAGGTATTGAAGCCGAGGATAAGAAAAATAACGTTAGGGCGATAAAAACGATTTTGTAGCGCGACATTGGCAATGTGCTGACAACTGAGAGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCTGTGCTTTGTCAGGAACAAATCACAGTCGGTGCGTTAAGACCGAACGAAGGCGGAAGGCAGTCACGTAGTGACCACTTGCGTGGTCGCCGCGGGAGATGGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAATAAACGCAAAACAACAAAACGTCCGAAACTAAAACAACCAAAAAATTTTGAGGAGAAGGGTTTTTGAAATCTAAAACATCCTACTACTAACCCTTTTTTTTTGACTTAAAATAAAATAGTTAAAAATCAATGCATTGAAAAATAGCTCAAAAAAAGGGTTTTTATTGGTAAAAATAGACTTTGCCTTTTTGCCAACAACATTTATAGTATATCGGGTTCTA # Right flank : TTCATACAAACCACCTTCGGGTGGTTTTTTATTGCTCCGAATCAATAAATAAAATACTCTTACAAAAAAGCTTATGAACATCTCGAAAAAGAATGTGCAAATTGAAGTACCCATAACTTTAAGTTCATCACAAAAAACTCTAAGAGGTTTTATTGTGTCAAAAAGTAAATAATTATTTAAAATAATCAAAACTAATTCAACCGCCTAATGGCGGTTTTTTTATGCCTGTCATTCGACCACTCAGCAGATGAAGTAACCAAATTTTTACAAAGAGCTAAAATTATCATTGATGTACAAAAAAGCAACGATAAGCTACGTAAAAATTGTAGGTAAGGATTATTTTAAAGATGATTATGAGAATGGAAATTTGTCTCAATATTGAGTGACCTTGTTTGTTGATTATGAAGCTAAAAATGATTTTGGTGTTGATTTAAAAAACACTTCAATATGTTATTTTTATTCTATTTTAATAAGAAATGATTATTTTATGTTCCCAGATT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 96200-95622 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGH01000009.1 Gilliamella apis strain P83G Gilliamella_apicola_P83G_contig17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96199 29 100.0 32 ............................. GACAAAGATATTCGTGAACTATCGGTTGGTTA 96138 29 100.0 32 ............................. TGATGGACGGGATAAACAGACACCTATTAAAT 96077 29 100.0 32 ............................. CTTTAATAACTGCATTTCCTTTGATAGCGGCC 96016 29 100.0 32 ............................. TGGTCAGAAGGATCAAAAGATTATGAAAACCT 95955 29 100.0 32 ............................. GCACAGGTGACGCACGGGAGCGCGAATCGCAT 95894 29 100.0 32 ............................. ATACCGATACTTCTTTGATTAATGTATGTGAA 95833 29 100.0 32 ............................. TAACGACAGGTCGGTATCTACCCTTGATTTAC 95772 29 100.0 32 ............................. TGTTCGCATGCGAACACTTTTTTTATATATAC 95711 29 100.0 32 ............................. ACCGAGTCTGAATATTATCAGTATTTAAAAAC 95650 29 86.2 0 .....................C..TTG.. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.6 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : TTTCAACGATGATGGTGAACCAACCAGCACAGCCGGCCGCCCTATTCTATCGGCCATTGAAGGTCAAGATTGTGATCAGGTGGTAGTGGTGGTCACCCGCTACTTTGGTGGCATCAAATTAGGTACAGGAGGACTCATTCGGGCTTACGGTGGTTCGGCTAGTCACTGCTTACAACAAGCAGAATTGATCGAACTTATTGCTAGAACATCATTACAATTTCACTGCTATTACAATGAATGGCCAATTATTGAAAACCGCTTAAAAGAACTAGATGCAGTCATTGAACAACAAAATTTTGATGCTGAAGGTGTAACTGTCATTATTGCTATAACACAAGATAATATAGTCATACTTAAAAAAAATATTAGCGATATTACTCGCGGTAGAGTGATTATCAAGACTTAAAACACCTGTATAAATATCCATCCAAATACAGCAAAAAATTGGTAGAAATTGTAGACTGCGTATTTTAATTATAAAACAAACGGTTATAATTAGA # Right flank : TTCCCTGTGTGTACAGGAATTAACTTCAAATTCAAACAAACCACCTTCGGGTGGTTTTTTATTGCCCAAACCTTTTAAATAACATACCATTACCCAAAAAAGGAGATGGTATGAAAAGAATAATTTTAGCGGGCTTAATTGGGATGGTTTTAACTGGTTGTGGTGATGAAAGTAGCGAGAAGAAAGTAACTGAGGAGATGTTACTTGGTGAGTGGAATTGCACAGATAGCAAGCAAGAAGCAGAATCAAAGGATGGTAAGCTGCAAGATTTTAGTGATCCTGAAATTGGTGAGAATAAATACATCTTTACCAAAAAAGATGGACAGCTTTTTATAAGTTTATCTTTATATAAAGAAGATTTAATGCCTTTTAATCTAGAAGATTTCTACAAAAGACCTGAATATACAATAGATGATAGACAAATGTCTCATAAGATTGAATATTTATCAAAAGATAGTTTTAGTTTGTCCGCTATATATACAACCATCGATAAAAACAAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 365098-364831 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGH01000009.1 Gilliamella apis strain P83G Gilliamella_apicola_P83G_contig17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 365097 28 100.0 32 ............................ ATGAGCGTTAGATAATCGACCATGATCATGCC 365037 28 100.0 32 ............................ ACGCCAGCAGCGAGGAGTGTGGGGCTATTGAA 364977 28 100.0 32 ............................ TGACTTTCCCTTCCTCGATCCATTTCTTTAAT 364917 28 100.0 32 ............................ CATCGAATAGTTTAATCACACAGTCTAACGGC 364857 27 92.9 0 ....................A..-.... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 98.6 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : TAGGTATTGAAGCTGAGGATAAGAAAAATACCGTTAGGGCGATAAAAAGCGATTTTGTGGCGTGACATCCGCAACGTGCTGACAACTGCGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAAAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTACGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGATGTAATCGCCGTATAGAAATAACCGCAAAACAGCAAACGACCGAAACTCAGCGAACCCAAAAAATTGAGGAAAGGGGTTTTTGAAACTTAAATTCCTACTTATTACTAACCCTTTTTTTTGACTTTAAATAAAATAATTAAAAATCAATATGTTGAAAAATAGCTTAAAAAAAGGGTTTTTAATAGTAAAATTACGCTTTTTCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : TATTAATTATTTCTAAAAAGATTAGGAAAAATTTTTCAAAAAGCTAAAAATCCAAATTAGTTATAGCTTTGTTAAATAAAAAAACCCCCAGTAATTGGTTGTCCAACTATTGGGGGTCACTTCATAGGAACGGTTTTTTATTATTGGTTAGATAATTTTACAATTATCCTTGGTATTTTTTCATGACAATTGACGCATTAGTACCGCCGAAACCAAAGCTATTAGACATTACTGTGGTTAATTCACGTTCGGTTGGCTCGGTAATAATATTCATGCCTACTGCTTCATCTGCAAGTTCGTCAATATTGATACTTGGTGTAATAAAGCCGTGTTCAAGCATAAGTAGTGAATAAATCAACTCTTGTGCACCGGTGGCACTTAATGAGTGACCAGTCATGGATTTAGTTGAAGAGATAGCCGGGATATTATCACCAAATACTTGTTTGATTGCCCATAATTCTTTGACATCACCAACTGGAGTTGAGGTACCATGAGTATTG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //