Array 1 18224-17017 **** Predicted by CRISPRDetect 2.4 *** >NZ_BATA01000055.1 Halarchaeum acidiphilum MH1-52-1 strain JCM 16109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 18223 30 100.0 35 .............................. AAAATATGTAATAACCTACTGCTTTAGTACCAATA 18158 30 100.0 37 .............................. CGTCCGCGCCGTCGACGCGCTCGACGAGCTCATCGAG 18091 30 100.0 36 .............................. GCCACGTGGGACACCGACGCTCCCGAGATCGTCGAG 18025 30 100.0 35 .............................. TTCGACGATGGACCTCGACCAGCTCCCGAGAGAGA 17960 30 100.0 35 .............................. GCCGAATTGGTGCCCGGATCGGTCTTGATCTCCAC 17895 30 100.0 35 .............................. ATCGCGAACCGCCTCTGGGAATCTGGCGAATACTA 17830 30 100.0 34 .............................. CGGACCGAACTCAACAAGCCAGCCTCCAAGCGCA 17766 30 100.0 34 .............................. GACTCCGTGGCGGGGAAGTCATGGCTGTGTGCTT 17702 30 100.0 35 .............................. GCGGAATATTGTCGAGGTCAAACAGATGTCCACTT 17637 30 100.0 35 .............................. TGCGTGGAAGATCGGTTGGTCGGTCTCGGTCTGTG 17572 30 100.0 35 .............................. GAGGTTATCACTCGTATTCGGACTATTATCATCCG 17507 30 100.0 36 .............................. CGCCAATACTGCAGTAGCTCCCGCCGTGCAGCATTA 17441 30 100.0 36 .............................. GTCGCTCAAGTCGAGTGATTCGACGGCGTGACCGTC 17375 30 100.0 35 .............................. CCGAATCAAGGGGCATCTCCCCACGGGATTGTTTC 17310 30 100.0 37 .............................. CCGCACTCGAAGGGGAACGTGAGTGCGCTTGAAGCGT 17243 30 100.0 36 .............................. CGGGAGACGCGATGGGCGCAAAACCGCATCGAGACG 17177 30 100.0 36 .............................. CGAAAGGACTGGATGGCTGAACCGAACTTCGTGATG 17111 30 96.7 35 ........................C..... CGTGACGCTGTCCCCGTAGGCGATTTCGTAGTCGA 17046 30 96.7 0 ........................C..... | ========== ====== ====== ====== ============================== ===================================== ================== 19 30 99.7 35 GTTACAGACGAACCCTAGTCGGATTGAAGC # Left flank : CCTAGTCGGATTGAAGCGATGTCCGCAACGGTCTCACGACCGCCGCCGGCT # Right flank : GCTCCCGGCGGTGCTCCCTGAGCTGGGACTCCCCGCTATCGCGTCGTTGAATCCGTCTGCGATGTCTCGTCCGCTATCCGTCGGCGTCGACGACGGTGAGCTTGACGTGGTGGACGCCTTCGAGCGGGCGGAGTCGCGAGAGGAGCGCCTCGATGCGCTCGCCGTCGCCGTCGACCGCGATGGATTCGAGACAGAGGTGGTGGCTGAGGTGGACGTGGTGGACGGCGATGATGGTGTCGGCGAAGTCGTGCTGGAGGTCGGTCATGGCTTCGGCGACGCCGCTGTGGTCGTGATCGTAGAGGACGACGACGGTGCCGCTGAGCGCGCCGTCGAGACCGGTCTGGCGATTGAACTCGGTGACGAACGCGCGCAGGGCGTCCCGCGTCGCTTCCGAGCGACTGGCGTAGTCGCCGGTCTCCACGACGTCGTCGAGCGCGTCGAGGAGGTCGGGCGGGACGGTGACGCTCATCCGATCGAGGTCGTCGCTCATACCCCGTCCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTCGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 421-59 **** Predicted by CRISPRDetect 2.4 *** >NZ_BATA01000065.1 Halarchaeum acidiphilum MH1-52-1 strain JCM 16109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 420 31 100.0 35 ............................... CATGCGGATCAGGGTCTTCTCGAAGATGACAGTCC 354 31 100.0 36 ............................... ACCAGTACTCCTCGGGCTCCGGCTCGTTCGCGAGCC 287 31 96.8 35 G.............................. TCAAAACAGCTTCTACCTGACTTTGACACAAAACG 221 31 100.0 35 ............................... TGGGAGAGGATGGCACGGTGGCGCGGCGTCGTGTT 155 31 100.0 35 ............................... CGCTTTCACCAGTCGGCGCAGTTAGGGTAACGTAC 89 31 96.8 0 C.............................. | ========== ====== ====== ====== =============================== ==================================== ================== 6 31 98.9 35 AGCTTCAATCCGACTAGGGTTCGTCTGTAAC # Left flank : GCTCCTCCCGCAAGAAGAGCTGCGCGCCGACGCGCGCGAACACGACTACTGGGCCGTCGCCTACTCCCCGCTCGCGCAGGGACGGGTCGCGGACCTCGACCCCGTACAGGCGGCCGCCGAGACCCACGACGCCAGCCCGTATCAGATCTCGCTCGCGTGGCTCCTCGCAAAGGAGAACGTCGCCGCCGTCCCGCGCGCGACCGGCCGCGAACACATCGCCGACAACTTCGGCGCCCGAAACCTCGATCTGAGCGACGACGAAATCGCCGCCATCGACGCCGTCGACGAACGCGAGCGCTGCATCGATCCCGACTTCGCGCCGTGGAACTGACGTCGGTCTGACCGACGCGAAACGGCGTCCGGAGAACCAATCAGCGGCGCGCTCGAAGCGGAGTTCGAAGACGACACTCTCCTCGACTTCGCGGACACAGTGCCGACGCGGCCTCGACTAAGGTTCGTCTGTAACGATGCGTACTGGCGGCTCGTTGAGTCCCACTGGC # Right flank : CACGCAAACACATCGACCACACTCGCAACCCGCTCACTGCTTCAATCCGACTAGGGTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCTTCAATCCGACTAGGGTTCGTCTGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 874-55 **** Predicted by CRISPRDetect 2.4 *** >NZ_BATA01000151.1 Halarchaeum acidiphilum MH1-52-1 strain JCM 16109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 873 30 100.0 35 .............................. ACACGTGCCACACACCGCCAAGATCTGAGACGCAT 808 30 100.0 36 .............................. TGTATGTGGCGCGTCATCTGGATCAAACCCGACCGT 742 30 100.0 35 .............................. GACTCTGTGGACACCAACTCGGGGACTGCCGTGGA 677 30 100.0 36 .............................. ATCGCCGGGATCGACGCCGAGTGCGTCCATGACCGG 611 30 100.0 35 .............................. GGGAGCATGGGGAACGCCCTGATGGGCGCGCTCGC 546 30 100.0 37 .............................. TGCGAGCGGTGTCGCGGACTCGTGTAGACTGTCGCGT 479 30 100.0 36 .............................. GGTATCCGACTCGACTGAACGGTCATCTGTCTCATG 413 30 100.0 36 .............................. ATAATAGTATCGAGCATTAGACAAGCCACTCCGATT 347 30 100.0 36 .............................. ATAATAGTATCGAGCATTAGACAAGCCACTCCGATT 281 30 100.0 35 .............................. GGCGGCTGGGGTGGTCGCTGACGTTCGCGGCCGGG 216 30 100.0 36 .............................. GAGCCTTCGGACGACTCAAGTAATTCGGCGAAATCA 150 30 100.0 36 .............................. CTTATCTTATTGAGATGGCCTCTACATAGCTTACTG 84 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 100.0 36 GTTACAGACGAACCCTAGTCGGATTGAAGC # Left flank : CCTAGTCGGATTGAAGCATCGATAGCGACGGTGGTCTCGCACATCGGTATCC # Right flank : CCCGAGCAACACCCCAACTGTCGCGGCGGGGAAGAACGTTACAGACGAACCCTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTCGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 29023-29181 **** Predicted by CRISPRDetect 2.4 *** >NZ_BATA01000028.1 Halarchaeum acidiphilum MH1-52-1 strain JCM 16109, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 29023 30 100.0 35 .............................. ATGACATGGGTCCTTGACGAGGTCGGCGACCTCGC 29088 30 100.0 35 .............................. GCGTCCTCCGGGAGGTCGCGCCACATCGCCCGCGA 29153 29 96.7 0 .............................- | ========== ====== ====== ====== ============================== =================================== ================== 3 30 98.9 36 GTTACAGACGAACCCTAGTCGGATTGAAGG # Left flank : GTCCTCGGGCTGGTCTTCGCCGCCGTCGGAATCCCCGTCCCCAACGTCGCCGAAACCGCGCTCGGATGGCTGTCGGAACTCGCGCTCCCCGCCGCGCTCCTCTCCGTCGCGGCGTCGCTCGTCCTCGACCCCGAAGGCGTGGACGTTCCCACCGTCGGCACCGTCGTCGCGCTCAAAGTCGTCTGCATGCCCCTGCTCGCGCTCGCCGGCTTCACGCTCCTCGGAAGCAATCCCATCACCGTCCGCACCGGCGTCGTCATGCTCGCCATGCCCACCGCCATCTCCACGTTCATCTACGCCACGCAACTCGGCGGCGACACCCGCCTCGCCTCCGCGAACGTCTTCGTCACCACCGTCATCTCCCTCGGCGCCGTCTTCGCCCTCCTCCAGTTCATCCCCTAGCCGTCGACCCCCCGGGGGTCCGAGGGACATCGCAGGTCGACGGAAACACTTTGTGTCACGCCCCGGTACGACGCGCTGTGTGCCCTGAACCGGGCACC # Right flank : | # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTCGGATTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 60-1490 **** Predicted by CRISPRDetect 2.4 *** >NZ_BATA01000140.1 Halarchaeum acidiphilum MH1-52-1 strain JCM 16109, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 60 30 100.0 35 .............................. TCGAAGAAGAGGGGCCACGCGGCGTCGGATACATC 125 30 100.0 40 .............................. ACTCGTCGCCTCCGGGGCGACGCCATCGTTCAGGTGCGCG 195 30 100.0 37 .............................. ACCGGCGAGGAGCTGCGCGAGCGCGAGGAGAGCGACG 262 30 100.0 37 .............................. GTCTGTTCGCGCTTCCGCGCGGCCGCGACCGCGTCCT 329 30 100.0 35 .............................. GGAACGATGCCGGCGAGCGGAACCTCGACGGTGTC 394 30 100.0 35 .............................. CGGCATGATGTCGGCTGGCTCGATCACCGACTCCA 459 30 100.0 36 .............................. GTGAGGTAGCCCTGCGGGTCGAGGTCGACGAGCAGG 525 30 100.0 35 .............................. TCATTTGGCGCGGGCTTCGCGTAGGGCAACGTCTT 590 30 100.0 38 .............................. CTTATAGAACCGCGCCCGGAGTAGCGCCGTCGTCGCGC 658 30 100.0 38 .............................. TCAGTATTCGTCATGCTAACCACACTCCCACTATTATT 726 30 100.0 36 .............................. CAGCGCGACGTCCTCCACACGCTCAATCAGTGTGGG 792 30 100.0 34 .............................. CCCTCGGATCGGACCCCCCGGATGCGGGGTGCGC 856 30 100.0 36 .............................. AATTTTCTCGGGCTTATGCGCGATATTGGTAATCCG 922 30 100.0 37 .............................. GGCTAACCCCGCCGACGGCCCGAATCAGCATACGGCG 989 30 100.0 34 .............................. GGTATGAGTGGTCATGGGAGCATTTCGTGGCCGC 1053 30 100.0 41 .............................. CCGGAGTGAGTGAGTGAGTCGTCGCCGTTGTGCGGCTCGAG 1124 30 100.0 36 .............................. TTTCTTCAATTCACGGATCTTCAAAAACTTTTCGGG 1190 30 100.0 36 .............................. GTGCGGTTGCGGATGATGAGCCGGTGGGTGTGCCGC 1256 30 96.7 35 ....................A......... GTGACGTTCGTTGCGGTGCGGCAGTTCCGCTAACC 1321 30 100.0 45 .............................. GCGTCGAGTTCGTCGAGGTCGTCGGCGGTGACGGTCGCCTCGATG 1396 30 100.0 35 .............................. CGTCCGCGTGCAGGATCGATCGCTCTCCATCTCCG 1461 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================= ================== 22 30 99.8 37 GTTACAGACGAACCCTAGTCGGATTGAAGG # Left flank : GACGAACCCTAGTCGGATTGAAGGGACGCGATCGCCGTCGTCGGGGTCGTCGCTTGGCGG # Right flank : AATAAATTATTGCGAGATAAACGTATTCCTATTGTTGTTACAGACGAACCCTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTCGGATTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 63104-62922 **** Predicted by CRISPRDetect 2.4 *** >NZ_BATA01000005.1 Halarchaeum acidiphilum MH1-52-1 strain JCM 16109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 63103 37 100.0 35 ..................................... CGGGCGGTGATCTCGCTGCCGTTGTGGAGGAGGTG 63031 37 100.0 36 ..................................... TCTTCGAGGGCGCTCGCGATGTCGAGCAGGATCCGG 62958 37 97.3 0 ......................G.............. | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 99.1 36 GTCGCGACGCGGTAGAAACCCAACACGGGATTGAAAC # Left flank : | # Right flank : ATCTTCGGTCGGGCGGGAGTCCGATGCGTGATCTGCGTCGCGACGCGGGCACGCGGGCACCCCCTCGTCACGCCCGTTCGACGTCGATGCGCGCCGTCCCTGCGCGCACGAGCGGGTCGGCGATGTCCGCGTGGAGGGAGGCGACGCCGTCGCGGACGCCGTCGTCCACGGCGAGGGTCGTCTCCACGCTCGCGCCGTCAGCGCCGCGAACGATCACGGGATCGCCGTCTTCGAGTCCGCGTTCGGCCGCCTCGTCGGGGTTGAGGTGGAGTAGGTCGTCCGCGCTCGCGTCCGCGGCGCCGAAGCCACCGGCGCGCGAGCCGACGACGAGCGCGAGACCGTCGTCGGCCATCTCGACGTCGGCGTCGACGGTCCCGAACGCGGCGCGACCGTCCGGCGTGGCGAACTCCCTCTCATCGCCCCAGCGCTCGCCGACCGCGACGTCGGCGTGGATCGGACTCACGGCGCGGAGTTCGTCGAACGCTTCGCGCGGGCCGTCG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGACGCGGTAGAAACCCAACACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [28.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : NA // Array 1 215-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_BATA01000112.1 Halarchaeum acidiphilum MH1-52-1 strain JCM 16109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 214 30 100.0 36 .............................. GCGTAGGGCTCGCCTGTGAAGGAGACGATGCCGCCA 148 30 100.0 35 .............................. CGCTCATCGGTCTCCCTCCTTGGGTTCGACGTCCG 83 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 100.0 36 GTTACAGACGAACCCTAGTCGGATTGAAGC # Left flank : ACGAAACGGTCGAACACCCGCAATTGAATCGGAACGTGAGCTACCAGTACCTCCTCCGCATCGAGGCGTACAAACTGAAGAAGCACCTGCTCACCGGGGAGGAGTACGTGCCGTTCAAACGGTGGTGGTAACGCTGCCCTACGCCATCGTCGTCTACGACGTCGCGGCCGAGCGGACCGCGAAGTTCCTCACGTACCTCCGCCGATACCTCACCCACGTTCAGAATTCGGTGTTCGAGGGGGAACTCACCGAGGGACAGATCGTCGAGGTAGAAGAGACGCTCGAATCGATGCTCGAAGTCGGCGAATCCGTGATGGTCTACCGGATGGCCTCGGAGAAGTACGTAGAGCGATCCGTTTTCGGCGACGATCCCATGGACGACCAACAGTTCTTGTAGCGTCGTCGTCGACCTCCGGGGGGTTCAACTGATATCGCCGGTCGACGAAAAGATTGAGGTGAGAACACCCAGAAGGAGAGGTGTCGTCGCTGAATCGAACACC # Right flank : CGTCCGCTGATCGCGCGCCGACTTCGAGAGCAACCCCAGTTACAGACGAACCCT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTCGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //