Array 1 324354-323729 **** Predicted by CRISPRDetect 2.4 *** >NZ_CGGM01000001.1 Yersinia pseudotuberculosis strain OK6088, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 324353 28 100.0 32 ............................ AATGAAGGATATGAGAAAGATAACCACTTGGT 324293 28 100.0 33 ............................ CAACAACGGCACTATTTGGATACGAAAGTCTTG 324232 28 100.0 32 ............................ AGTGTAATCTTGCGAAAAATAATGTCATTAAC 324172 28 100.0 32 ............................ ACTCACGCCCGGTGCGCGTTCCCTGCTTTCCA 324112 28 100.0 32 ............................ CAACACAATCAGGCCGTGAATGCAGAAGACGG 324052 28 100.0 28 ............................ CTTGACAGAAAAAAAAAGTTTTTGTACT 323996 28 100.0 32 ............................ TGATACAATCATCCTATTTGTCCTATCCAGAA 323936 28 100.0 32 ............................ TCCCACTTATCACCGCGCTTAATCGCTATCAG 323876 28 100.0 32 ............................ TTAAAATTGTTGATGGCATAGCGATACTTTTC 323816 28 100.0 32 ............................ TCGAATATCTGGGTGGTCTTGGCCAGCACTTC 323756 27 89.3 0 .....................CC.-... | T [323731] ========== ====== ====== ====== ============================ ================================= ================== 11 28 99.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGCCAGAGCGTATTGTCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAAACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCCCCACCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTATCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAGGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTGTCACTTT # Right flank : TCTCAGCTCTCTGGCGGCGTTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGATCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 59841-59211 **** Predicted by CRISPRDetect 2.4 *** >NZ_CGGM01000006.1 Yersinia pseudotuberculosis strain OK6088, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 59840 28 100.0 32 ............................ AGACCAGCATGCGCCGGTGGAGGAATAGTATC 59780 28 100.0 32 ............................ TTCATATAGACAGCTCTCATTACCATCTGTAG 59720 28 100.0 32 ............................ TCATCGAAAACGAAGCGGCCTTACCGAAAAGG 59660 28 100.0 32 ............................ ATATCGTCAAAGGCCAGACACAGCGCGGTGAT 59600 28 100.0 32 ............................ GCTCAGGTGAGCATACTTATTGACCATTTCAA 59540 28 100.0 33 ............................ ATTTTAACGCCGACGTATCAAGTCAGTTCTACG 59479 28 100.0 32 ............................ AAGCGCATTGGACGAGTCGATTAAATAAACCC 59419 28 100.0 32 ............................ GCATCTCGGCGGGAACAAACCCCATCAATGTT 59359 28 100.0 33 ............................ GTCGATTTTATCGCAGACGTTGCGGGGGGGGGT 59298 28 100.0 32 ............................ GTGATGGGGATTTCTGCCGGGCGGTCAAACAG 59238 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGGTCGACGATGTGCTCACGCCGCTTTAACGTATTCATACGCCAACCTTCAACCTTTGGTTATCCGTAAAGTAATTACAACAAAGAACGCCAATCAGAATTGCCACCTGGCTCACAGTACAAAACTTGCTATAAAAACCCTAAAAATCTTTCGATTGGTCATCAATCGAAAGATTATGCTAAGAATATAAGAATGGATAATGGGGAGTGAAACCAGAAATGGCGGAGTATTCGATTCAGTAAAGGGAAAGAAAGTGAAAAAATATAGGCTAAGGGGAGTGGTTATCGCTTTAAAATCAGCCCGTGATAAAGATCACAATAATAACTCATGGGGATTCTTAGCCTATTCACATCAGGGGAATCATTTTTTAACCCTATTTTTTTAGCTATGGCTAACTCATTGATTTTATATCCTGCTTACCGAGGGTTAAAAAAAATCATTTTTTACCCTTTGGCGAAATAATTATTTTACAAACAGTCTGTTACCCGTATTATCTTACT # Right flank : AAGAAGGCCCAAGCGTTGATTACGAAAATGTTTCGCCGGGCACGAAAAGTGTTGCCAATATGTTTGATAATATAATGCATTACTAACTCTTTTTTATGTGGTTTTACCCCATGTCTCAGCCAGAGATAATAAAAACACCCATTAACGGAATGGTAATTAGTGTACTAATTGCCATAGATAATACATTTCCAACATAAGGATGAATATCACTAGGGAGTCGGTCTGATATAGCCGCTGCTAAAGGAGGGGCTATTAATGCACCTAGTGTGGCCGCCATAATAATAACCTGTACTGTTCCGCCATAAACCAAGACCGCAGCAGGTGCCACCGATACAACAGGGACATATGTAGGGTACCAGCCTCGGGTGATCCATTGTTTACGCCAGACGACGACTCCGATTGCTGATGCAAGAGCCTGAGCGGTGAGTACCTGTGTTAATAATCCACTACCGTATACCGGCAGTGCTGGATTTAAGGCTACGGCTAATAGAATGCCAATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15919-16966 **** Predicted by CRISPRDetect 2.4 *** >NZ_CGGM01000024.1 Yersinia pseudotuberculosis strain OK6088, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15919 28 100.0 32 ............................ GCTACCGATTGATACATACCCTACTTTATCAA 15979 28 100.0 32 ............................ AGTACAATAAGAGAAAGCGGAGTAAAGGCGGT 16039 28 100.0 32 ............................ ATAACGTGGAATCCGGCGTCACGCAATAATGC 16099 28 100.0 32 ............................ AGAGTCAATGATATTATCTATGTAATAATTCT 16159 28 100.0 32 ............................ TGATACAATCATCCTATTTGTCCTATCCAGAA 16219 28 100.0 32 ............................ GTCGGCGTAGCGGTTAAATTCGACGAGCCAGT 16279 28 100.0 32 ............................ ATTTCACCATATGGAATCGCCACCGGGCCACC 16339 28 100.0 32 ............................ ACTATCTAATGATTTCTCGGAGAGAATATAGC 16399 28 100.0 32 ............................ TAACTGGAATGCGGTAGGTGTCATACCACCAA 16459 28 100.0 32 ............................ GGATAATTACGACCCGGAAACGCGCACATATG 16519 28 100.0 32 ............................ ACAATTGGACGACCTAAAGAAAACGTTTTACA 16579 28 100.0 32 ............................ AAGAACATACCCAAGCCAGATTTAGCGCCATG 16639 28 100.0 32 ............................ TATCAGGGTGATGATAGACACGACCCCAAAAA 16699 28 100.0 32 ............................ CACCTGCCGTCCGTAAATCGCGTGCAATCTTG 16759 28 100.0 32 ............................ CGCTCAAAGCAGTGGCACGACTGAAAGACATT 16819 28 100.0 32 ............................ GCGAAGCAATGAACTTGCTGTTGACGCCGCTC 16879 28 100.0 32 ............................ ACTGGCGGTAAACGCTCCCCTATCTGGCCCAA 16939 27 85.7 0 ...................-A.A.C... | T [16963] ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGGTTGTTGCCCAGCGAGGGGAGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATTCTGGGCCATGCGCTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAACATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGGCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //