Array 1 43955-44593 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSHB010000018.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
43955 29 100.0 32 ............................. ACCGCAGAAAAAACCAGCTGGCCTCGAAAGAA
44016 29 100.0 32 ............................. ATCTGGCTCTTCAAAAAACAGCAGCCTGAACC
44077 29 100.0 32 ............................. CCGCCATCACAGAACCTTGCCAGACCGTATCC
44138 29 100.0 32 ............................. CGCCCAGGATCAGCTTACTGCGCACCGTTTCC
44199 29 100.0 32 ............................. GCGGGTTTTTTACGCGTGGGGTTGCAACAGGT
44260 29 100.0 32 ............................. AAAAAACAGCAAAAGATGAACAAAATATAAAC
44321 29 100.0 32 ............................. GATCTAAAAAGGATCTGCGGAACTGAAAAAAT
44382 29 100.0 32 ............................. GGTTAAACATGCCGTTAACGCCATTTCAGCGC
44443 29 100.0 32 ............................. GGTATTTATTGTGCAATTAGCTTTGCATTAAA
44504 29 96.6 32 ..........................A.. TTTAGCGTAAAGTCAACAATTACTTGGCTTTT
44565 29 96.6 0 ............................A |
========== ====== ====== ====== ============================= ================================ ==================
11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA
# Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT
# Questionable array : NO Score: 6.23
# Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.65,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 2 60095-61465 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSHB010000018.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================= ==================
60095 29 100.0 32 ............................. CGTCCAGTGATAGAACTCGACGACGGAACAAC
60156 29 100.0 32 ............................. ATTTTTTCCGTTAGTTAGTGAGCGTGATAACA
60217 29 100.0 32 ............................. AGGGTTACAGAAAAGAAGCATCGCAACTTGAT
60278 29 100.0 32 ............................. CACAAGAAAAAGATATCGCAGCGTCATTTATG
60339 29 100.0 32 ............................. GTCGCTTTTGGCGGCGTGGGCTAATGCTGGTT
60400 29 100.0 33 ............................. TTTTCGGGACGCACTGCAACCTACCAGGACCGC
60462 29 96.6 32 ............................T GTTTCGCCGCAAATACTACCGCAACGGCGCGC
60523 29 100.0 32 ............................. CGAACAGAAAAACCGTTCTCAGCCAGCGTCAG
60584 29 96.6 32 ....................A........ CAAACGATGAGCGGGCCAACGAATCGCCGTTG
60645 29 96.6 32 .............T............... ATCCACGGTTCGACGCCGATCGCCGTGGCTAT
60706 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC
60767 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG
60828 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA
60889 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC
60950 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA
61011 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT
61072 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA
61133 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT
61194 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA
61254 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA
61315 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT
61376 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT
61437 29 93.1 0 ...........AT................ |
========== ====== ====== ====== ============================= ================================= ==================
23 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT
# Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA
# Questionable array : NO Score: 6.22
# Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.92,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//