Array 1 1562502-1561436 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP003182.2 Granulibacter bethesdensis CGDNIH4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1562501 29 100.0 32 ............................. AGAGGCTTCGATCCCCTTATGTTGCTTCGAAC 1562440 29 100.0 32 ............................. TGATTGGCATCACACCCGACAATACCTGCACG 1562379 29 100.0 32 ............................. ACTTTATCAGATCGCTCCCCCGCGCGCGTGGG 1562318 29 100.0 32 ............................. CGGGGGCGGCTCCCCCCAGCACGAGAGATGCT 1562257 29 100.0 32 ............................. GCGATTCGCGTTCACGCCACTGGCGTCGATCT 1562196 29 100.0 32 ............................. ATTTTAACGATGCGCTGATGCACAAGCTGGGG 1562135 29 100.0 32 ............................. CCCGGGTAATTCTGTGACGGCACGACCAGACC 1562074 29 100.0 32 ............................. ACCGCATACGCGTCATGCTGAGCCTGTTCGGA 1562013 29 100.0 32 ............................. TTGTGGACAGGCTTGCGAGGATCGAAGAGAGG 1561952 29 100.0 32 ............................. AACTTCTGAACGGAACATACTGGTGTAGGCTG 1561891 29 100.0 32 ............................. GGCACAGATCAGGACTGGAACCCCCAGCATGG 1561830 29 100.0 32 ............................. TCCGGCCTCGGCTCTGACGCTGATCTCCGGAT 1561769 29 100.0 32 ............................. CGGATTGTCGCTATCGTGGACGGGGCTGCCTT 1561708 29 100.0 32 ............................. CCAGGATAGATCTGTCCGTTGCCGAACGCCTA 1561647 29 100.0 32 ............................. AGATGCCACGCAGCTCGGCATGTACCTTGGCT 1561586 29 100.0 32 ............................. CCAGGATAGATCTGTCCGTTGCCGAACGCCTA 1561525 29 100.0 32 ............................. AGATGCCACGCAGCTCGGCATGTACCTTGGCT 1561464 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GTGTTCCCCGCCTGCGCGGGGATGAACCG # Left flank : TCGGACGGGACTTCTTGGACGTATTATTCCCGCGATTGAGGACGTTCTTTCCGCTGCGGACATTCCCCGTCCCGAGCCCCCACCCGAGGCTGCTCTACCCGCTTTTGACGAAGAAAAGTCTGGCGATGAGGGCCATCGCGGATGATGGTTGTGGTTGTCACCAATGCGCCGCCACGCCTGCGTGGCAGACTTGCTGCATGGCTGGTTGAAGTGAGGGCCGGTGTCTATGTCGGCAACTATTCGGCTCGGACGCGTGAAATGATCTGGCGCCAGGTGACGGAAGGTCTGGAAACAGGCGACGCCGTCATGGTGTGGAAGGCCCCAACGGATCAGGGATATGACTTCCTCACTTTTGGTCGCAACCGCCGCATGCCCATTGATTTTGATGGACTGAAGCTTGTAACTTTTCTTCCCGAAAAGTCGGCCTAAAAACCTCTTTTTCTGTCGGTAAGATCTTTGACAATGTAAAAAATATTTTGAATCAATTACTTATGCGAAGA # Right flank : GCGGCACATCTGCACCGAGCGCCAGAGGAGCCGTGTTCCCCGCCTGTCAGCGAAGGCCGGATGAGTGACCACAAGGTCGGCAATCTCTTCGTCAAACTCAAGGATTGGCGGCGTATCAGAACTCGTTACGACAGATGCGCACATACTTTCTTCTCAAGCATATTCATCGCAGCAGCAGTCATGTTCTGGCTATGATTTAATGAGTCCTGAGCCTAGACAGGTGGTGTAGAGAATACCCATCTTCATTGCTGTTTTCTTGATCCAATTCGGTCAGCACGTACGCCAAAGAAGCCGATCTTTGCAGCGGTCAAGATCATGGCCGTTCCGCAAGATGCATGCTTGATAGTATGCTCCCAAACCAGTTTTCTGTGGCCTGTCCAGCTGCCAATCGATCTCCTTAAACTCTTGCTGAAGGGCCTCCCCCACAGTCTTTGTGTGGAATGAGGACCATAAATTCTAATATACAAAATATAATATATATATTATATAATATGTTTAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCCTGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCCTGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1571706-1571434 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP003182.2 Granulibacter bethesdensis CGDNIH4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1571705 28 100.0 33 ............................ TTCTCTCGACTATCGGCTCGCGCGAGTGATTGC 1571644 28 100.0 33 ............................ TCTTGATCTTGTTGATGCAGTCAATAATTACGG 1571583 28 100.0 33 ............................ CTCGCCGGCCTGCCGAGGTACTGGCACAAGACT 1571522 28 100.0 33 ............................ CCGTATTAATGCCCTCTTAAAAATCTGCGTGCG 1571461 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 33 GGTTCCCCCGCGTGCGCGGGGATAGTCC # Left flank : TTGATGCCGCAGCGTGCCCGCTGGACCGGGCTGATGTTGAACTGGTTGAGGTGGCGAGGGCGGTCATGCGGCAGCATTATCGCCCATTATGGCATACGGTGGCAGCTGCTTTGCGGGATGCCAATGGCCGTATATGGACCGGCCTTCATCTTGGCGCGACGGTGGGGCGTTTGCAGATTTGCGCAGAAGCGATTGCACTGGGCCGGGCCAAGCTGGAAGGGGCGGCTGATATCGAAACGGTGGTTGCCGTCCGTCATCCCAAACAGGATGAACCCGATCAGGATATTGCCGTTGTCTCCCCTTGCGGTGCATGCCGGGAGATGTTTGCGGATTTTGCCCCTTCCACCATGGTCATTGTTACGGGGGAGCAGGGGTTGATCAAGGTGCCGCTTGCTTTGCTTCTCCCCCTTCCTTACCGGCGCTGAAAAAGCCGGCTTGCATTTTTCTCAAAATGTGGAAAATAGGGATTGTTCTTTGAAATCAATAACATCAGCCCTAGA # Right flank : TTTTAATCGAGAGCATGTGGGCGCAGATGGCCACCATGAAGCGGCCGATGCGGACAGAACTGTAAAAGACTTACTGCAAGACGCTGCTGAACACCTGTTCCGCCATCCCTATACGAAAATCGAGTCTGTTCAGTCCGACTTGGGCATAGCGCGTCAGACGGTGGGTAAATATGCTGATCAGCTTTCGGAGAAAGGTCTGCTTTCCAAGCACCGTTCAGAGCGTAGCAACTATTATATCAACGCACCTTTGGTCCGCCTCTTCCTGAGAAGTGTAGGGTGGTGCATGCTCCAGGATTGCCGAAGCACCTTTTAATCCTGTGTCTGTTATATTGCCGTAATTTTTACCCATCCATGAGATTAAATATCTCCGGACAGTTACGTTGATGGAGCTGCGCAATGCAGTGGAAAAACTGGCCGGGTAAAAGCTCGGTCACTCCGGATGGTCCTGAACATCCGGCAGCCTTTCATATGCTTGATGTTGCTGCGGTGGCGGAAAGGCT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCGTGCGCGGGGATAGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 3 1878257-1877741 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP003182.2 Granulibacter bethesdensis CGDNIH4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1878256 28 100.0 33 ............................ TTTCACCCAGACGGCAGGCGGAAAGGGAAACAA 1878195 28 100.0 33 ............................ TGTATCTGATGGTCTCCACTACTGGCTCACTCC 1878134 28 100.0 33 ............................ TGATCTTCAGCTGGCTGGGGCAGTGCTACGATC 1878073 28 100.0 33 ............................ TTTCAGACTCCGATCATTTTATCTGACTTGCCT 1878012 28 100.0 33 ............................ GTATTACTCAGCGCCGCGCCGCCTAGCCTCTTA 1877951 28 100.0 33 ............................ CTGGACCGGAGGATATGCTGGCGCTGGATCTTT 1877890 28 100.0 33 ............................ TATCGGTGTGTCGCAGTCGTATCTCTCCGAAGT 1877829 28 100.0 33 ............................ GGTATCCCGGCTGTAACCGGTGCGCTGGATGAG 1877768 28 92.9 0 ...........A...A............ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 99.2 33 GGTTCCTCCGCGTGCGCGGAGATAGACC # Left flank : ACATAAGAATTGCTGCGTCCGGCCTGATGTTTGAAGAGCAATTCTTTTTTGGTCCGGCTTTCAAGATATCAGGCTGCTGTCGGCAATAAGAAGGAAAGGTCTTTCTGCACCAAAAACGATTTTGGTGTCGGGCTTGATGGCACAGGTTATTGAATGGATCCTTGCGCACCCAGCGCTTCATCCGGGTTTTGTTCCATCAATGATTGCCAAGCATGTTCTGGATGTTCCGCCAACGGGTGAGCGTATAGAGAGCCAATCTTCTCATGCCCCTTTTTAATCCTGCACCCGTTGCAGAAGACGATCAGACGCGTCTTTAATTCTGCATGAGGAAGTGGGAGAGAGGCAGGGTTGATATAGCTCCTAACCTGATTCTGTTCTGATTGTGATGCTCCGAAGGAAATTATCGATGCCGGTGGAGTGCTGCTGTTTCAGAGACGTTAATTTCTGAAACATTATGTTCTTTGAGATTGTCAATAAGTATCAATGTGTTGTAGGCAAGA # Right flank : TTACGCATCGTCAGGGATCGCTACTCTCCCGCCGGGGCTGTGCAAACCGCCCCCCGGCCTGATACACCCGGGTGCATGGATGCACGCCCGCTCGATCAGGTAACGGATCAGTCGCCACCCCCACACGCTCCGCCAAAGCGGAGAGGTAAAGGGGCGCGGAAGATCAACGTGGAGTTGGAGCCGACCGCCCTCGCCATGATGGGGCGGCTGTGGCGGGAGCATATCGCGCATCACCGTGTTCGTATGCTGGTGGTGATCCTGCTGACGGCGCTGATGGCGGGCAGCACGGCGCTGTATCCGGTGGTGATCCAGCATGCGATCGATCTGTTCAATGCCCGTGACCGGCGGATTTTGTACCAGATTCCGGTGCTGGTGCTGATCGTCACCGCCATCAAGGGCGCGGCGATGTATGGACAGACTGTCTCCATGCAGCAACTGGTACTGATCGTCATCAGGGAGTTGCAGGAGCGCATGTTCAGCCACCTCGCCCATGCCGATCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTGCGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //