Array 1 32161-34506 **** Predicted by CRISPRDetect 2.4 *** >NC_007777.1 Frankia casuarinae, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 32161 29 96.6 32 ............................T GTCAGCCCGAAAGATCTCCGGTGGCCGTCGGC 32222 29 100.0 32 ............................. CGCAGCAGTGTTCACCCGCGCATGTCTGTTAC 32283 29 100.0 32 ............................. GAGATGAAACACAGCAGCTCGACAGGGGTGCC 32344 29 100.0 32 ............................. TCGGCCCAGCCCATCCGCTCGATGGCGCAGCG 32405 29 100.0 32 ............................. TCCCTCGCCGAGATGTGGGTGCTCACCCGCTG 32466 29 100.0 32 ............................. GGCTCTACGCCCTGCACCACGTCGACATCGCC 32527 29 100.0 32 ............................. CAGAACATGACCACGGTCGGCTGTCGCGCGCT 32588 29 100.0 32 ............................. CGTCTCCGCGGACTCGACCAGTCACCCATGCC 32649 29 96.6 32 ............................G GTTCCCGAGCATCGACCGGGCGGCCTGCGACC 32710 29 96.6 32 ............................G GTCTCGTGCATTCCGATCGCGGCCGCGGCGGC 32771 29 96.6 30 ............................T ATTTTCCGGAGCTTTGAAACCCATTGCTTA 32830 29 100.0 32 ............................. ATTGCGGTCCTGCACAGTCATCCAGACCAGGG 32891 29 96.6 32 ............................T CCCAGAGGGCAGTCCTGGAGTGGTGGCGCCCG 32952 29 100.0 32 ............................. CTCGACGTACACCACAAGCGGCTACACGCCGA 33013 29 96.6 32 ............................G AGCATCCGTCGGCTCCAGCTCGGCTGAGGCCG 33074 29 96.6 32 ............................T TCGGGTGAAGAAAGCCGCGCGCAATCGCATTC 33135 29 96.6 32 ............................G CGGGGGATGAGGTCGGCGGGCACGTGCCAGTG 33196 29 96.6 32 ............................T TGAGATGGACGCCGACCACACGGCGCGGATCG 33257 29 96.6 32 ............................T CTGCTGTCATATCTGGTGGGTGGAAACCGCCC 33318 29 100.0 32 ............................. AGATCGGACCGGCCGGCTGGGGCTCCCACCGC 33379 29 96.6 32 ............................G CGCATGGGGTTGCAACTCCGCACCGCCCGGCA 33440 29 96.6 32 ............................G GACGAGATTGCGGCGATCGGAAACGAGATCGT 33501 29 96.6 32 ............................G CCTGGCCCGGCCCGGCCGCGGGGTCGGGATGA 33562 29 100.0 32 ............................. TTCCCATCGACCCACAGCTAGGCATCCTGGAC 33623 29 96.6 32 ............................T GGCCCAGACGTGGGCCGACGACCAGCGCAATC 33684 29 96.6 32 ............................T TCCAGCCTCATCCCGCCACCAACGTCCCGCAG 33745 29 100.0 32 ............................. CCGAGGTCTTCGAGAAGGTAGAGGCTTCCCGG 33806 29 96.6 33 ............................T AGCGGGACCGTCCGGGGCTGCAACCCCCGGACG 33868 29 100.0 32 ............................. CCGTCGTCGCTGACCGCGCCCAACTTCGCGGC 33929 29 100.0 32 ............................. CGTGCCCGTTCCCGGGCGATCCGCGCGCGCAT 33990 29 96.6 32 ............................T CTCGCCATCCAGAAAGTTGCCGGTTCCAGAGG 34051 29 96.6 32 ............................T GCGCCGCGATGCGGCATGAGCGGCTTGTCGTC 34112 29 100.0 32 ............................. CTACACCATGGACGACGTCAACGCTATGGCTG 34173 29 96.6 32 ............................T TCGGGTGAAGAAAGCCGCGCGCAATCGCATTC 34234 29 100.0 32 ............................. CTCAGATGAGGTGGGAAAGCTTGCCTTCGCGG 34295 29 96.6 32 ............................T TGAGATGGACGCCGACCACACGGCGCGGATCG 34356 29 100.0 32 ............................. CCCCACCCCTGTTTTCGAGGAGACCCCACGAT 34417 29 100.0 32 ............................. ATCCAGGAAGGAGCAGACCGTGACCGTCGAGC 34478 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================= ================== 39 29 98.2 32 GTCGTCCCCGCACGCGCGGGGATCTTCCC # Left flank : GCCCGCATCATCCACGACATCAAAGACCTCCTCATCGAGGAAGGAACCCGAGATAACGACGAGGACGCACTCCACTTGTGGGACGAGCTCGACGGCCACGTCCCCGGCGGCGTCAACTGGGCCGCCGACCTCGCCGACCAGACCGACGACACCACCATCCTCGGTGTCACCGGACCCGACACCGACCAGCCACCCCCACCCTGGTGACCGTCATCGTCCTCATCGCCACCGCCGACGGCCTCCGCGGCCACCTCACCCGCTGGATGATCGAAATCTCGGCGGGCGTCTTCGTCGGCAACCCCAGCGCCCGCGTCCGCGACCGGCTCTGGACCCTGCTCTCCCAACGCGTCGGTGACGGCCAAGCCATCATGATCGAACCAGCCACGAACGAACAAGGCTGGGCCGCCCGCACCGCCGGCCGCAACCGCACCCAGCCCGTCGACTACGACGGACTGATACTGTTTGCCCGATCTCGCCGATAAACCCGCAGGTCAGCAAGT # Right flank : GGTGAGCAGGGGAGCCGGGTCAGTCGCTCTCGACGAGGACCACCTCGGAGGGGATGTTGCCCCGGGTGGCCACGGAGTATGGGCACAGGGCGTGCGCGGCCTCCAGAATCTCCTGGGCGCTCGCCCGCTCGATGCCGGGGATCTGTGCCTCGATCCGCGTACTCAGCCCCAGGCTGCCGTTGTCGTTCCTGATCAGCCCGACGGTCACGGAGACCGCCGAGTCCTTGATATCGATCTTCTTCCCGCGCGCGATGGCCTTGAGCGCGCCATGGAAGCACGCCGCGTAACCGGTGGCGAACAACTGTTCCGGGTTCGTGCCCGGTCCGTCGTCACCACCGAGGCCCTTCGGGGCGGAGAGCTGGAGGTCGACCCGGTTGTCGCTGGACACCACCCGTCCGTCGCGTCCACCCCAGGCGGTCGAGGTGGCGGAGTAGATCGTGTTCGCCATGGTTGCCTCCGTGCATCAGGTGTTGCCGAAGCTCCGGAGAGCCTGTGACATT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.67, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACGCGCGGGGATCTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCATGCGCGGGGATCCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3905897-3904716 **** Predicted by CRISPRDetect 2.4 *** >NC_007777.1 Frankia casuarinae, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================ ================== 3905896 37 100.0 36 ..................................... CTCCGGGCCGGAAAGCATTACAACGTGCCCCTACAG 3905823 37 100.0 37 ..................................... CGCAAGGGCGGACATCTGGCGATCCAGGCCGGAGCGG 3905749 37 100.0 34 ..................................... GGGTCATTGTGACCGGTCGGCTCAAGCAGCGGTC 3905678 37 100.0 36 ..................................... TCCCGAGGAAAAGCGGGACCAGATAGCGGGGGCGCA 3905605 37 100.0 34 ..................................... TACCCGCGTGGCTCCAACCAGCTGGTGTTCGCGA 3905534 37 100.0 36 ..................................... ATAGGACCAGGCGGCGACGGTGAGCGCCGGCCGGGG 3905461 37 100.0 34 ..................................... ACCCGGATGCAGTCGACGACATGTTCGAGCACTT 3905390 37 100.0 35 ..................................... ATCCAAGGCGTTGACCAGCCCGACGGCACCATCGA 3905318 37 100.0 34 ..................................... CGTTGGTGCAGATCAGCACCAGGTCGTCACCATC 3905247 37 100.0 37 ..................................... GGCGTTGCGCTCGGCGAGGATCCGGGCCGTGTCCCAG 3905173 37 100.0 35 ..................................... AACCAGCGGACGAGCAGCTCACGGGAGGCGGACAC 3905101 37 100.0 38 ..................................... GGTGGGTGGCGTGTAGGTCTTTGCTGTCGCGGCGGACG 3905026 37 100.0 36 ..................................... GGCGGTGCCGTTGGTGCAGATCAGCACCAGGTCGTC 3904953 37 97.3 35 ..............C...................... AACCTGACGCTGGCGCAGGCCCACCTCGCCCACCA 3904881 37 94.6 92 ..............C.................G.... GCGAAGATGCGCGAACTGGGCTGGATCTGCCGCGAGGGCAGCGCCGAGGATCACAACTGAGTCACGATAAGGCACCATATCGCGACCCAGAA 3904752 37 75.7 0 .........G.C.CC...G.C........T..C...G | ========== ====== ====== ====== ===================================== ============================================================================================ ================== 16 37 98.0 39 GCAGCGCCGAGGGATCGCCCTCGGCGAGGATCACAAC # Left flank : GACGGCACCGAAACCCTCGTCACCCTGGCAGCCCTCGTCGCCGCCCATACCCCCGGAGCGCTGAGAACCCCCGCCGCCAGCGAACCCGCCGATCCTCCCAGCCAGGCGGCCCTACCCACCCTCACCAGCCAGCCACCGGTGGCCTCCGCAAACCTGCCCCACCTCCAGGCTACCGAGGCATCCGACCTTGACTTCTGACCTCCCACACGTCGGGCTCGCCTCCGGACGGATCCGCGCTGGCCCCTTCCCGGGATCATTGATCCACCGCTCCGGACAGCGGATAGCGCCACACCGAAACCCTCGACCGTCAAACCGTGATGCTGGACCACGAACGCACGCCACCCGGGCTGATGGAACCGCCTTTTGCATGGTTCGGAACCCCAAGCACCTGCTGGCCGACCGGGACCTTCCGAACTCGAAATCACCGCAAATCGGGCGGAGACGGGGACAAGACGCTGCCATTCGATCAACCCTGTGGCTATTCTTCCTGTACAAGCAGG # Right flank : GGTGCGGTGTCCAGTCGGCTACCGCCAGCCAGCGGGCAGTGAGGGGTTCGCGCCTGGCGACGAGGTTCTCAATTCTACGGAGGCCAAGGTGATCTTCATCTATGAGTGGCAGGGCTGGACGTCCGTACTCATTGCCGTACCTGTTCCAGCGGTAACGCGGTATGAGCACTTTCTGTTACGAAAATCGTTGGCCTGGTGTCGCGCTGGTGATGCCGAGGCGATGCCAAACTGACCGGCACTGGCCGGTATCGACTGGCGGAGGCAGCACTGTACGGACCGGTGAGCTGCTGGAACGGCATGGGACAGGCTGCGCTGCCACGAGTCTGCTCCCACTACGTGGGACTCATAATCCTCCGGTCGTGGGTTCGAGCCCCACCAATTTTTTGATCATTCCTCCGACCTGGGTGGATGCGGTTTACGATCTATCCCTTTGAGATCCAGGGCTGTGGAACGATCCTGGTCAGGACCTCGACAGGTGGTCCGAGCCCCGCCTGGACGAC # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCCGAGGGATCGCCCTCGGCGAGGATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.20,-17.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 3 3971225-3972714 **** Predicted by CRISPRDetect 2.4 *** >NC_007777.1 Frankia casuarinae, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 3971225 37 100.0 36 ..................................... CTCGAAGCCGTCCTCGGCGGCCTCGGCGCACTGGCC 3971298 37 100.0 36 ..................................... TGCAACACGGACAGGTTGGTGATCTGGTCGACGGAA 3971371 37 100.0 35 ..................................... AACACCGGCGGGACCATCCCAAAAAGTGATCACTT 3971443 37 100.0 35 ..................................... TACTGGCTGCGGAACGTCGCCCCAGCCGATCTGGG 3971515 37 100.0 34 ..................................... AACGAGAGGACGTTATGACCAGCCGTATAGATCA 3971586 37 100.0 35 ..................................... GCCCTGGAAGTCGACGAGATCGACGCTGCCGCGGC 3971658 37 100.0 35 ..................................... CTGGTCGCCTACGTGGTGCCCGCCGAGGGGGAGAG 3971730 37 100.0 35 ..................................... ACCGGTTCGTTGACGAAATGCAGCCCGAATACGTC 3971802 37 97.3 39 ........................T............ TGCACCGTTGACACATCCCCACTATTCGACACGGTCGAA 3971878 37 100.0 36 ..................................... GTCAACATCGCCGACGGATGGGCGCCGTCCTCGAAC 3971951 37 100.0 36 ..................................... GAGGTGTACACCACCTCAGACACTCTCGATGTCGTC 3972024 37 100.0 38 ..................................... TCCGCGAGGAGGTCGGCGAGGGTGGTCAGGCCATCGGC 3972099 37 100.0 35 ..................................... GCCATCCTGCTGTACGGCGTCGCGACGAAGATCGA 3972171 37 100.0 34 ..................................... ACCAGCTCCTCGGCGCCGGGGATGTCCGCTGGGA 3972242 37 100.0 37 ..................................... GACAGCTCCGAGATCGGCCCGCTCGGGGACCGGCCGG 3972316 37 100.0 34 ..................................... CCGATCTGCTGGTCGACATCGCCCCCGAGGGGGA 3972387 37 100.0 35 ..................................... ACCTCGTGGCAGCAGGTCCAGGACTACGTCGAGCA 3972459 37 100.0 36 ..................................... CGCTCGACAGGTCGATCTCGTACAGGGCGCCGTCCA 3972532 37 100.0 38 ..................................... GATGGCGCACCGGCGCAGCTCGGCGTTGCGCTCGGCGA 3972607 37 100.0 34 ..................................... TACTCCGGCACCGAGACCGCCGCGAACATCACAG 3972678 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 21 37 99.9 36 GCAGCGCCGGGCGTCCGCGCCCGGCGAGGTTCCCAAC # Left flank : CCCTGCTCCAGGCCAGGATCCTCGCCCGACACCTCCGCGGCGACATCCCCCGGTACATCCCCTGGAGCCCTACCTGATGGACCTCCTCGTCACCTACGACGTAGACACCACCACCCCCGACGGCAACCGCCGCCTCCGTAAAGTCGCGAAAATCTGCGAAGGCCATGGCATCCGCGTGCAGAAATCCGTCTTCGAAATCGTCTGCACCGAACCCCAGCGCGTTCTCCTCGAACACAAAATCAGTCAGGTCATCGACGAGACCCTCGACAGCATCCGGATCTACCAGATGCCCCAGCACACCCTCGACAACGTCCACCACCTCGGCGCAGGCGTCCAACCCGTCCACCGCGCCGACCACATCATCTGACCGCCTCGGAACCCCAAGCACCTCCCCGACACCAGGCACCTCCCTAAGCCAGAAAGCACACAAAACGGTCAGAGACCCGGCCATAACAGTGACACTGGATCTTCTTCTACGAAGAACTCCCTGCTCAGACAGG # Right flank : CCCCGTGGTGGCGGCATCTGCCGCGATCGCGGCGGCGGGCCGTCGGGGGTCCATTTCCCACCGAGGACGATGCGCAGAAGGCGCTGATGGCCTCGTTAGCGGAGCTTCACGGCGGCGACTGGCTGGAAGAGGCCTGACTCGAACCCACGACCGACGGATTATGAGATCATCGGCAGCCTGTTCGCCGGTCTCCATGGACGTCCGCCGGTCCTGATCACAGGTACACCCGGTCGCCCCGCCGCTTCTTGATGATCGACGCCACAATATGGACAATACATCCTTTGAAGCCATAATCGCACCGATCTGGTCGCGCAACGGTGCAGGTCGACCGGCGTACACCAGATCGTCGATCATAGCCAAAGAGGCATAAGTTATTCGCCAGCTAGGAAACTCAGGCTAGTCCAGAACATCCGCCGCGGCTACGACGAACTCGACGTCGAGGCCGATTCTCACCCGATACTGTCGCCCGTTCTCACCGAGCTCGCCCGCGCCATCTGACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCCGGGCGTCCGCGCCCGGCGAGGTTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-18.40,-18.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 4 4015489-4015653 **** Predicted by CRISPRDetect 2.4 *** >NC_007777.1 Frankia casuarinae, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================== ==================================================== ================== 4015489 21 100.0 52 ..................... TCCTCACACCAGGTGAGGCCACATGTGAGTCCGCGGGCAGCGCCGGGCGTCC 4015562 21 100.0 50 ..................... TACTCCGGCACCGAGACCGCCGCGAACATCACAGGCAGCGCCGGGCGTCC 4015633 21 100.0 0 ..................... | ========== ====== ====== ====== ===================== ==================================================== ================== 3 21 100.0 52 GCGCCCGGCGAGGTTCCCAAC # Left flank : TCACCAGCGGGCATTCTCAAACACCTTCTCAGCTTGTCGTTTAACCTTCGGGTGTCACTCTGTGTGATAGTCGCTGGTGGTTTGGGGTGGGCCGGCGTGTCGCCGTGACGTGAAGCGGCCTCCTGTTGATCCTGGTTTCTCACCAAAGACACCGTGATCAGACAGAAGGCCGTGGAGGACAGCTTGGCCCACGATGTCCCCATCGTCGAGCACCTTGGGGTGCTGTGTCGGTTCCGCCAGGAGTTCTATGGCTGTCTGACCCGGCGGGCGGATGCCCTGTTCGAGCTCACCGACGCCGTGCTGTGCGCGGACGGCCCGGTCCGTGACCTGGTCGGCCTGTCGCCGGCAGCGGAGCACCGCCGAGGGCACGGCGCGTTGTACGGCGCGATCAACCACGGCCGGGTCGAGATCAGCCGGCTGCGCCGCGCGCTGGCCGGGCTGCCGCTGCCGCGGGCCGCCGACGGCCGGATCGTGCTGGGTGTGGACGTCAGCCCGTGGCT # Right flank : CCCCGTGGTGGCGGCATCTGCCGCGATCGCGGCGGCGGGCCGTCGGGGGTCCATTTCCCACCGAGGACGATGCGCAGAAGGCGCTGATGGCCTCGTTAGCGGAGCTTCACGGCGGCGACTGGCTGGAAGAGGCCTGACTCGAACCCACGACCGACGGATTATGAGATCATCGGCAGCCTGTTCGCCGGTCTCCATGGACGTCCGCCGGTCCTGATCACAGGTACACCCGGTCGCCCCGCCGCTTCTTGATGATCGACGCCACAATATGGACAATACATCCTTTGAAGCCATAATCGCACCGATCTGGTCGCGCAACGGTGCAGGTCGACCGGCGTACACCAGATCGTCGATCATAGCCAAAGAGGCATAAGTTATTCGCCAGCTAGGAAACTCAGGCTAGTCCAGAACATCCGCCGCGGCTACGACGAACTCGACGTCGAGGCCGATTCTCACCCGATACTGTCGCCCGTTCTCACCGAGCTCGCCCGCGCCATCTGACC # Questionable array : NO Score: 4.30 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:-0.5, 7:-0.60, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGCCCGGCGAGGTTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [21.7-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //