Array 1 2246025-2244874 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071008.1 Flavobacterium columnare strain B245 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2246024 36 100.0 29 .................................... CAATAGCTTTGCTTAATGTATCAGAATTA 2245959 36 100.0 30 .................................... AACCCGACTGTATTGATATTTTTTTGATAA 2245893 36 100.0 29 .................................... TACATTGTCGCTAAGTATTTCTACATCTC 2245828 36 100.0 30 .................................... TTGTATTTAGTAGAACTTAAAATATACCTA 2245762 36 100.0 30 .................................... TTTTATGTTTTTGACCGTAATCAAAAGATA 2245696 36 100.0 30 .................................... CGATTAATTTTAGATAAACCAAGAACTTTG 2245630 36 100.0 29 .................................... ATGATAAATAAGTTTTGTATGATGATGTA 2245565 36 100.0 29 .................................... ATTTCTTTTAGTCTTATTCTTTTCTTGAA 2245500 36 100.0 29 .................................... CCTGCTGTAATTGCTGTAATTGCTGAATA 2245435 36 100.0 30 .................................... AGTTAGATTTATATCAAGTATTTTAGCCTG 2245369 36 100.0 30 .................................... TCTATTACAGTGTAATATTCTTCAGGTATT 2245303 36 100.0 30 .................................... ATAAAATCCATTTTTTCAAAATAATTTAAA 2245237 36 100.0 30 .................................... GCATTTGATATTTTATAATTGTTCCGATTT 2245171 36 100.0 30 .................................... TCTACTGTTTTTATTAACTTGATAAACAGT 2245105 36 100.0 30 .................................... GTTTTTTGAATAAATAGTTCATAATCGTAA 2245039 36 97.2 29 ....A............................... ATTTGAGATTGGTGGATTAGCCTTATCAT 2244974 36 100.0 29 .................................... ACGCCTCTATTTCACGTTTATGGTAAAAA 2244909 36 69.4 0 .........................AGGGACGAGCG | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 98.1 30 GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Left flank : TTTACTTAAATATTATGATTATAATACTGAAGAGTTGAAGGAAAAAATAAAAAATATGGATGAGGATGAAAAAGCCAAAATAGTTAATACTAAAGAGAATTATAACAAAATAACCAATGTTTTAATTAAAAAAGCACTTGTTTTAATTATCATTCGCAACAAAATGGCGCACAATCAATATCCTCCTAAATTTATTTACGATTTAGCTACTAGTTTTCAAAATGATAAAGGGAATAAAGATTGGGAAAAATTTGTACACCAAAAAGAAAGCGAATACTTTGCGACCTATTTCAACCGAGTTTTTGAAACCATAACAAAAGAATTATGGGAAAACAAAGAGAAAAAAGATAAAACACAGGTCTAAATACAATTGCTCTTTGACATTTTAAATTAGGATTAAAAAAATGACTACATTTGCAGTGATTAAAACAAAAAAAGTTCATTTTTTAGTATAAAAAATTGTAGTAATCCCTTACTATGAGAGGCTTACCAGCGTTTAG # Right flank : TTAAAAAATAGTCCAATGGACTATTTTAGCGAAGTAGCCAGGAGGCGCGTGGGCGTTTAAAACCGAATTCAATTTTTTTGAAGGAGGGACGAGCGTTAAGGAAGCTGTCCAAAAAGTACTAATTCAACATCCAGTTTGTCACTCCTACGTAAGGAGGAGTCTCATAATCAATAGTATGTAATTTCTTCCTTTGGTCAAAATCACAAGATTGCGAACTTTTTGGACAGTCTCTAGCAAAATAGCGAGCAGGCGTTTGAAACCAAATTCAATTATTTAAAAAATAGATAAACCATAATTCTTATTCATAGAAATACCTGTTTTTTTAAAATAACAAAAACAAACCTATAACACAATCAAGTAAATATGATCTGTATACTACCTCCTAAACTTCCTTATAATTTAACCTCAACACCTAAGATATTTTTGTAAATTTGATCCATCAAACCATTTGGAAACATGAAGGCTAAATATATTAATCCGTTTACCGACTTTGGATTTAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 2806759-2804167 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071008.1 Flavobacterium columnare strain B245 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================= ================== 2806758 36 97.2 30 ......A............................. TCATCATTTATTAATGAATCAAAATTATCA TAATA,T [2806744,2806755] 2806686 36 100.0 30 .................................... ATTTTATTTTTTTCAAAGGTCAAGGATGGA 2806620 36 100.0 30 .................................... ACAAATATAAATTATGACAACTTTATCATT 2806554 36 100.0 29 .................................... TAAATAAAAAAAGTTTAGTAAAAGTTTAG 2806489 36 100.0 73 .................................... TCTGTTAATAATAGTAATCCCGTTTATATGGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGTG 2806380 36 94.4 30 T.....A............................. AATGGTCGGACAACCTATATACACCTTCTT AATAT [2806368] 2806309 36 100.0 30 .................................... TAAATCATCAGTAGTTCGTATTGTGGATAT 2806243 36 100.0 30 .................................... TTTAGAGTGCAATACGGAAATTTCCGAGTA 2806177 36 100.0 30 .................................... AAAAATTTGTTAAAGTTTTGTTGAAAAGTA 2806111 36 100.0 30 .................................... TTATTTTGAAAAAAATTCAATTATAGGGAT 2806045 36 100.0 30 .................................... CGAGCTAATTCTTCAGCTAAACGTTGTTTG 2805979 36 100.0 30 .................................... GCTGGTTTGAGAAACGAAGGCGAGGTCTTT 2805913 36 100.0 30 .................................... TTAGTAATCAAAATTAATTTTGAATTGCAT 2805847 36 100.0 30 .................................... TCACGCTTTAAGATTGCGTTCTTACGAAGC 2805781 36 100.0 30 .................................... ATGGTGCTGAGTAATTCATTACTCATAAAC 2805715 36 100.0 29 .................................... GTAAACAAGTTTATTATACCTGGCACGAT 2805650 36 100.0 30 .................................... TAAGCCGTGGGGTTCGATCCCGACACCGAA 2805584 36 100.0 29 .................................... GATATAAAGAGGTTGTACAATAAAACCGA 2805519 36 100.0 29 .................................... ATTTTTCAATTCACCGTGGGTCGCCACCC 2805454 36 100.0 30 .................................... AGAATGTAGAGATTTATTAAATGAAATTGA 2805388 36 100.0 30 .................................... TCACGCTAAAAATAATTTTAACATTGATTT 2805322 36 100.0 30 .................................... CAAATCACAATCATTTGAGATTGAATAGTG 2805256 36 100.0 30 .................................... TTATTGCCGGAACACCAGCGAATGAAGTAA 2805190 36 100.0 30 .................................... GAAAGAAGCTAAAGCGATGTTAAGAGCATT 2805124 36 100.0 30 .................................... ATATCTTTTCTTTTACAGGAAACAATAAGA 2805058 36 100.0 30 .................................... CAATTTTAATTTATGACTGAATTTGAAATG 2804992 36 100.0 30 .................................... AAAACCATAAGAATTATTTAAAAAGTTACC 2804926 36 100.0 30 .................................... CTTTTACAATGCACGAAATTGTAGAAAATG 2804860 36 100.0 30 .................................... TGGTCAAGCAGATTCTGTAGAGAAACTTCT 2804794 36 100.0 29 .................................... TTAAAAAACAAATTAAATCTTGAAGACCA 2804729 36 100.0 30 .................................... ATATAAAACTAAAAATAAATTTATAGTAAT 2804663 36 100.0 30 .................................... ACAAATAGTTAAATCCCAGCCGTTGTATTG 2804597 36 100.0 29 .................................... CTAATGGATTATTCATTGACGTAATTGAT 2804532 36 100.0 30 .................................... TTAAGTCATGATACCGATGGATTATCGGTA 2804466 36 100.0 30 .................................... TCGTATCATTTGACATCTAAGATAATATAT 2804400 36 100.0 30 .................................... TTGTAAATTTTTAAAAACTTCTAAAAGAGA 2804334 36 100.0 30 .................................... TACTGTTTTGTTTCATTTGGTAAATCAAGA 2804268 36 100.0 30 .................................... GGTAATTTTAAAACAAATGAGTATGTACGA 2804202 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================================================= ================== 39 36 99.8 31 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : AAATGCTTGCCGAATTTAAAAAACGATTAAATGTATAATTATGATTTAAGCGAACAAGCTAAAATAGATTTGTTGCGTATTTATGAATATGGAATTGGTCAGTTTGGTCTAGACCAAGCTGATAAATATTTTGACATGATGCACGATTGTTTTAATAAAATTGCTAAAAATCCATATTTATTCCCTTTGGCATCAAATATTAAGTCAAATTATTACAAATGTGTTTGCGGAATTGACACCATCTATTATAAAGTTGTTACAAATGGAGTTATCATTACAACAATAGTTGGAAGGCAGGATTTTGAAATTCAAAATTTAGTTCATTGACATACACTATCAAATCGCAAATAACCAAACCTCATACTGATTGGTTTGATTAAAGATTAGAAACCGAGGGACGAGGTTCAACGAAGTCAAAACACGATATTATTTGGTTAAAAATTACGATTGTAATTTCAGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGT # Right flank : AGCTAACAGCTTAGTTATTAAATATCAAAGCATTAAGCCAAAATATCGTTAAAAAAAATGCTTCTTTTTTGGCACGTTATACCAAGATTGAAGCATTTTTTTATTTCTAAAACAGTTCCAGTTGGGTGGGTTGTGGTGCTTTAGGGGTTTCTACTTTACCCCAAAAGTTTTGTATGTTCCCAAATTGCTTGTCTGTAATTCGTAACATACTTACTTTTCCTGAAGGAGGCAGGAGTTTGTGTACACGTTTTTCATGTACATCGGCACTTTCGCTACTGGCACAATGCCGTATATATACCGAGTATTGCATCATACTAAAACCATCTTTCAAAAGTTGGTTCCGAAATCCAGAAGCATTTTTTCGGTCTTTCTTAGTCTCAGTAGGCAAATCAAAAAACACAAACAACCACATAATTCGATACCCGTTTAAATCCATAATTTTGGGTATTTTATCTTTTTACGATCGCCCGAAAAACACTGTTGTAAGGAACTTGCCGTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //